Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS06595 and DZA65_RS06600 are separated by 64 nucleotides DZA65_RS06600 and DZA65_RS06605 overlap by 1 nucleotides DZA65_RS06605 and DZA65_RS06610 are separated by 4 nucleotides DZA65_RS06610 and DZA65_RS06615 are separated by 163 nucleotides
DZA65_RS06595: DZA65_RS06595 - zinc ribbon-containing protein, at 1,371,524 to 1,372,006
_RS06595
DZA65_RS06600: DZA65_RS06600 - amino acid ABC transporter ATP-binding protein, at 1,372,071 to 1,372,796
_RS06600
DZA65_RS06605: DZA65_RS06605 - glutamate/aspartate ABC transporter permease GltK, at 1,372,796 to 1,373,470
_RS06605
DZA65_RS06610: DZA65_RS06610 - amino acid ABC transporter permease, at 1,373,475 to 1,374,215
_RS06610
DZA65_RS06615: DZA65_RS06615 - glutamate/aspartate ABC transporter substrate-binding protein, at 1,374,379 to 1,375,302
_RS06615
Position (kb) 1372
1373
1374 Strain fitness (log2 ratio) -2
-1
0
1 at 1371.863 kb on + strand, within DZA65_RS06595 at 1371.863 kb on + strand, within DZA65_RS06595 at 1371.863 kb on + strand, within DZA65_RS06595 at 1371.933 kb on - strand, within DZA65_RS06595 at 1371.933 kb on - strand, within DZA65_RS06595 at 1371.933 kb on - strand, within DZA65_RS06595 at 1372.073 kb on - strand at 1372.073 kb on - strand at 1372.100 kb on + strand at 1372.178 kb on + strand, within DZA65_RS06600 at 1372.270 kb on - strand, within DZA65_RS06600 at 1372.344 kb on + strand, within DZA65_RS06600 at 1372.345 kb on - strand, within DZA65_RS06600 at 1372.478 kb on + strand, within DZA65_RS06600 at 1372.478 kb on + strand, within DZA65_RS06600 at 1372.479 kb on - strand, within DZA65_RS06600 at 1372.479 kb on - strand, within DZA65_RS06600 at 1372.482 kb on + strand, within DZA65_RS06600 at 1372.482 kb on + strand, within DZA65_RS06600 at 1372.483 kb on - strand, within DZA65_RS06600 at 1372.483 kb on - strand, within DZA65_RS06600 at 1372.668 kb on + strand, within DZA65_RS06600 at 1372.668 kb on + strand, within DZA65_RS06600 at 1372.668 kb on + strand, within DZA65_RS06600 at 1372.707 kb on + strand, within DZA65_RS06600 at 1372.772 kb on + strand at 1372.772 kb on + strand at 1372.773 kb on - strand at 1372.818 kb on + strand at 1372.819 kb on - strand at 1372.858 kb on - strand at 1372.886 kb on + strand, within DZA65_RS06605 at 1372.886 kb on + strand, within DZA65_RS06605 at 1372.887 kb on - strand, within DZA65_RS06605 at 1372.887 kb on - strand, within DZA65_RS06605 at 1372.953 kb on + strand, within DZA65_RS06605 at 1372.953 kb on + strand, within DZA65_RS06605 at 1372.953 kb on + strand, within DZA65_RS06605 at 1372.953 kb on + strand, within DZA65_RS06605 at 1372.953 kb on + strand, within DZA65_RS06605 at 1372.953 kb on + strand, within DZA65_RS06605 at 1372.954 kb on - strand, within DZA65_RS06605 at 1372.954 kb on - strand at 1372.954 kb on - strand, within DZA65_RS06605 at 1372.954 kb on - strand, within DZA65_RS06605 at 1372.967 kb on - strand, within DZA65_RS06605 at 1372.967 kb on - strand, within DZA65_RS06605 at 1373.104 kb on + strand, within DZA65_RS06605 at 1373.104 kb on + strand, within DZA65_RS06605 at 1373.104 kb on + strand, within DZA65_RS06605 at 1373.105 kb on - strand, within DZA65_RS06605 at 1373.136 kb on + strand, within DZA65_RS06605 at 1373.140 kb on - strand, within DZA65_RS06605 at 1373.165 kb on + strand, within DZA65_RS06605 at 1373.170 kb on + strand, within DZA65_RS06605 at 1373.170 kb on + strand, within DZA65_RS06605 at 1373.171 kb on - strand, within DZA65_RS06605 at 1373.244 kb on + strand, within DZA65_RS06605 at 1373.244 kb on + strand, within DZA65_RS06605 at 1373.244 kb on + strand, within DZA65_RS06605 at 1373.245 kb on - strand, within DZA65_RS06605 at 1373.245 kb on - strand, within DZA65_RS06605 at 1373.295 kb on + strand, within DZA65_RS06605 at 1373.295 kb on + strand, within DZA65_RS06605 at 1373.295 kb on + strand, within DZA65_RS06605 at 1373.295 kb on + strand, within DZA65_RS06605 at 1373.296 kb on - strand, within DZA65_RS06605 at 1373.296 kb on - strand, within DZA65_RS06605 at 1373.423 kb on + strand at 1373.423 kb on + strand at 1373.423 kb on + strand at 1373.424 kb on - strand at 1373.424 kb on - strand at 1373.424 kb on - strand at 1373.424 kb on - strand at 1373.428 kb on - strand at 1373.428 kb on - strand at 1373.466 kb on + strand at 1373.466 kb on + strand at 1373.466 kb on + strand at 1373.466 kb on + strand at 1373.473 kb on - strand at 1373.473 kb on - strand at 1373.473 kb on - strand at 1373.477 kb on - strand at 1373.510 kb on + strand at 1373.510 kb on + strand at 1373.510 kb on + strand at 1373.510 kb on + strand at 1373.511 kb on - strand at 1373.511 kb on - strand at 1373.511 kb on - strand at 1373.511 kb on - strand at 1373.560 kb on + strand, within DZA65_RS06610 at 1373.560 kb on + strand, within DZA65_RS06610 at 1373.560 kb on + strand, within DZA65_RS06610 at 1373.561 kb on - strand, within DZA65_RS06610 at 1373.561 kb on - strand, within DZA65_RS06610 at 1373.561 kb on - strand, within DZA65_RS06610 at 1373.561 kb on - strand, within DZA65_RS06610 at 1373.561 kb on - strand, within DZA65_RS06610 at 1373.590 kb on + strand, within DZA65_RS06610 at 1373.591 kb on - strand, within DZA65_RS06610 at 1373.605 kb on + strand, within DZA65_RS06610 at 1373.743 kb on + strand, within DZA65_RS06610 at 1373.743 kb on + strand, within DZA65_RS06610 at 1373.744 kb on - strand, within DZA65_RS06610 at 1373.744 kb on - strand, within DZA65_RS06610 at 1373.744 kb on - strand, within DZA65_RS06610 at 1373.749 kb on + strand, within DZA65_RS06610 at 1373.749 kb on + strand, within DZA65_RS06610 at 1373.749 kb on + strand, within DZA65_RS06610 at 1373.749 kb on + strand, within DZA65_RS06610 at 1373.750 kb on - strand, within DZA65_RS06610 at 1373.750 kb on - strand, within DZA65_RS06610 at 1373.816 kb on + strand, within DZA65_RS06610 at 1373.816 kb on + strand, within DZA65_RS06610 at 1373.816 kb on + strand, within DZA65_RS06610 at 1373.817 kb on - strand, within DZA65_RS06610 at 1373.817 kb on - strand, within DZA65_RS06610 at 1373.858 kb on + strand, within DZA65_RS06610 at 1373.858 kb on + strand, within DZA65_RS06610 at 1373.858 kb on + strand at 1373.859 kb on - strand, within DZA65_RS06610 at 1373.943 kb on + strand, within DZA65_RS06610 at 1373.944 kb on - strand, within DZA65_RS06610 at 1373.962 kb on + strand, within DZA65_RS06610 at 1373.962 kb on + strand, within DZA65_RS06610 at 1373.963 kb on - strand, within DZA65_RS06610 at 1373.963 kb on - strand, within DZA65_RS06610 at 1373.963 kb on - strand, within DZA65_RS06610 at 1373.963 kb on - strand, within DZA65_RS06610 at 1374.013 kb on + strand, within DZA65_RS06610 at 1374.013 kb on + strand, within DZA65_RS06610 at 1374.013 kb on + strand, within DZA65_RS06610 at 1374.014 kb on - strand, within DZA65_RS06610 at 1374.014 kb on - strand, within DZA65_RS06610 at 1374.014 kb on - strand, within DZA65_RS06610 at 1374.014 kb on - strand, within DZA65_RS06610 at 1374.014 kb on - strand, within DZA65_RS06610 at 1374.118 kb on - strand, within DZA65_RS06610 at 1374.140 kb on + strand, within DZA65_RS06610 at 1374.141 kb on - strand, within DZA65_RS06610 at 1374.154 kb on + strand at 1374.154 kb on + strand at 1374.154 kb on + strand at 1374.155 kb on - strand at 1374.155 kb on - strand at 1374.155 kb on - strand at 1374.155 kb on - strand at 1374.155 kb on - strand at 1374.155 kb on - strand at 1374.161 kb on + strand at 1374.161 kb on + strand at 1374.162 kb on - strand at 1374.162 kb on - strand at 1374.207 kb on + strand at 1374.207 kb on + strand at 1374.207 kb on + strand at 1374.208 kb on - strand at 1374.215 kb on + strand at 1374.349 kb on + strand at 1374.349 kb on + strand at 1374.350 kb on - strand at 1374.359 kb on + strand at 1374.359 kb on + strand at 1374.360 kb on - strand at 1374.360 kb on - strand at 1374.369 kb on - strand at 1374.369 kb on - strand at 1374.371 kb on + strand at 1374.372 kb on - strand at 1374.372 kb on - strand at 1374.390 kb on + strand at 1374.391 kb on - strand at 1374.437 kb on + strand at 1374.437 kb on + strand at 1374.437 kb on + strand at 1374.437 kb on + strand at 1374.437 kb on + strand at 1374.437 kb on + strand at 1374.437 kb on + strand at 1374.437 kb on + strand at 1374.437 kb on + strand at 1374.437 kb on + strand at 1374.437 kb on + strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand at 1374.438 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 1,371,863 + DZA65_RS06595 0.70 +0.3 1,371,863 + DZA65_RS06595 0.70 -0.3 1,371,863 + DZA65_RS06595 0.70 +0.2 1,371,933 - DZA65_RS06595 0.85 +0.4 1,371,933 - DZA65_RS06595 0.85 -0.7 1,371,933 - DZA65_RS06595 0.85 -0.5 1,372,073 - -0.7 1,372,073 - +0.2 1,372,100 + -0.1 1,372,178 + DZA65_RS06600 0.15 -0.3 1,372,270 - DZA65_RS06600 0.27 +0.1 1,372,344 + DZA65_RS06600 0.38 -0.4 1,372,345 - DZA65_RS06600 0.38 -0.4 1,372,478 + DZA65_RS06600 0.56 +0.0 1,372,478 + DZA65_RS06600 0.56 +0.9 1,372,479 - DZA65_RS06600 0.56 -1.1 1,372,479 - DZA65_RS06600 0.56 -0.7 1,372,482 + DZA65_RS06600 0.57 +1.1 1,372,482 + DZA65_RS06600 0.57 +0.5 1,372,483 - DZA65_RS06600 0.57 +0.0 1,372,483 - DZA65_RS06600 0.57 +1.1 1,372,668 + DZA65_RS06600 0.82 +1.2 1,372,668 + DZA65_RS06600 0.82 -0.2 1,372,668 + DZA65_RS06600 0.82 +0.0 1,372,707 + DZA65_RS06600 0.88 -0.1 1,372,772 + -0.3 1,372,772 + -0.4 1,372,773 - -0.1 1,372,818 + -0.3 1,372,819 - -0.3 1,372,858 - +0.3 1,372,886 + DZA65_RS06605 0.13 -0.7 1,372,886 + DZA65_RS06605 0.13 -0.1 1,372,887 - DZA65_RS06605 0.13 -0.7 1,372,887 - DZA65_RS06605 0.13 +1.4 1,372,953 + DZA65_RS06605 0.23 -0.5 1,372,953 + DZA65_RS06605 0.23 +0.3 1,372,953 + DZA65_RS06605 0.23 +0.4 1,372,953 + DZA65_RS06605 0.23 +0.1 1,372,953 + DZA65_RS06605 0.23 -1.7 1,372,953 + DZA65_RS06605 0.23 -0.1 1,372,954 - DZA65_RS06605 0.23 -0.4 1,372,954 - -1.4 1,372,954 - DZA65_RS06605 0.23 -0.2 1,372,954 - DZA65_RS06605 0.23 +1.3 1,372,967 - DZA65_RS06605 0.25 +0.3 1,372,967 - DZA65_RS06605 0.25 -0.4 1,373,104 + DZA65_RS06605 0.46 -0.2 1,373,104 + DZA65_RS06605 0.46 -1.3 1,373,104 + DZA65_RS06605 0.46 -0.1 1,373,105 - DZA65_RS06605 0.46 +0.3 1,373,136 + DZA65_RS06605 0.50 +0.3 1,373,140 - DZA65_RS06605 0.51 +0.4 1,373,165 + DZA65_RS06605 0.55 -1.4 1,373,170 + DZA65_RS06605 0.55 +1.6 1,373,170 + DZA65_RS06605 0.55 -0.4 1,373,171 - DZA65_RS06605 0.56 -0.1 1,373,244 + DZA65_RS06605 0.66 -0.7 1,373,244 + DZA65_RS06605 0.66 +0.2 1,373,244 + DZA65_RS06605 0.66 +0.7 1,373,245 - DZA65_RS06605 0.67 +0.9 1,373,245 - DZA65_RS06605 0.67 +0.2 1,373,295 + DZA65_RS06605 0.74 +0.3 1,373,295 + DZA65_RS06605 0.74 +1.5 1,373,295 + DZA65_RS06605 0.74 +1.1 1,373,295 + DZA65_RS06605 0.74 +0.2 1,373,296 - DZA65_RS06605 0.74 +0.3 1,373,296 - DZA65_RS06605 0.74 -0.0 1,373,423 + +0.1 1,373,423 + +0.5 1,373,423 + -0.5 1,373,424 - -0.3 1,373,424 - -0.0 1,373,424 - -0.6 1,373,424 - -0.1 1,373,428 - +0.3 1,373,428 - +0.1 1,373,466 + -0.4 1,373,466 + -0.7 1,373,466 + +0.3 1,373,466 + -0.4 1,373,473 - +0.6 1,373,473 - -0.3 1,373,473 - +0.2 1,373,477 - -0.4 1,373,510 + -0.2 1,373,510 + +0.6 1,373,510 + -0.6 1,373,510 + +0.9 1,373,511 - -0.4 1,373,511 - -1.2 1,373,511 - +0.3 1,373,511 - -1.8 1,373,560 + DZA65_RS06610 0.11 -0.7 1,373,560 + DZA65_RS06610 0.11 -0.7 1,373,560 + DZA65_RS06610 0.11 -0.6 1,373,561 - DZA65_RS06610 0.12 +0.2 1,373,561 - DZA65_RS06610 0.12 -0.9 1,373,561 - DZA65_RS06610 0.12 +0.4 1,373,561 - DZA65_RS06610 0.12 +0.6 1,373,561 - DZA65_RS06610 0.12 -0.6 1,373,590 + DZA65_RS06610 0.16 -1.0 1,373,591 - DZA65_RS06610 0.16 +0.5 1,373,605 + DZA65_RS06610 0.18 +0.3 1,373,743 + DZA65_RS06610 0.36 +0.9 1,373,743 + DZA65_RS06610 0.36 -1.4 1,373,744 - DZA65_RS06610 0.36 +0.9 1,373,744 - DZA65_RS06610 0.36 -0.1 1,373,744 - DZA65_RS06610 0.36 +0.5 1,373,749 + DZA65_RS06610 0.37 -0.2 1,373,749 + DZA65_RS06610 0.37 +0.3 1,373,749 + DZA65_RS06610 0.37 -0.5 1,373,749 + DZA65_RS06610 0.37 -1.0 1,373,750 - DZA65_RS06610 0.37 -2.2 1,373,750 - DZA65_RS06610 0.37 +0.4 1,373,816 + DZA65_RS06610 0.46 -0.3 1,373,816 + DZA65_RS06610 0.46 +0.1 1,373,816 + DZA65_RS06610 0.46 -1.1 1,373,817 - DZA65_RS06610 0.46 -0.9 1,373,817 - DZA65_RS06610 0.46 -0.7 1,373,858 + DZA65_RS06610 0.52 -1.1 1,373,858 + DZA65_RS06610 0.52 +0.3 1,373,858 + +1.3 1,373,859 - DZA65_RS06610 0.52 +1.6 1,373,943 + DZA65_RS06610 0.63 +1.4 1,373,944 - DZA65_RS06610 0.63 -0.4 1,373,962 + DZA65_RS06610 0.66 -0.2 1,373,962 + DZA65_RS06610 0.66 +0.1 1,373,963 - DZA65_RS06610 0.66 +1.3 1,373,963 - DZA65_RS06610 0.66 -0.0 1,373,963 - DZA65_RS06610 0.66 -0.3 1,373,963 - DZA65_RS06610 0.66 +0.3 1,374,013 + DZA65_RS06610 0.73 -0.7 1,374,013 + DZA65_RS06610 0.73 +0.8 1,374,013 + DZA65_RS06610 0.73 -1.4 1,374,014 - DZA65_RS06610 0.73 +0.5 1,374,014 - DZA65_RS06610 0.73 +0.9 1,374,014 - DZA65_RS06610 0.73 -0.3 1,374,014 - DZA65_RS06610 0.73 -0.3 1,374,014 - DZA65_RS06610 0.73 +0.5 1,374,118 - DZA65_RS06610 0.87 -1.9 1,374,140 + DZA65_RS06610 0.90 -0.2 1,374,141 - DZA65_RS06610 0.90 +0.6 1,374,154 + +0.1 1,374,154 + -0.5 1,374,154 + +0.1 1,374,155 - +0.3 1,374,155 - -0.2 1,374,155 - +0.3 1,374,155 - -1.1 1,374,155 - +1.1 1,374,155 - -0.3 1,374,161 + -0.3 1,374,161 + -1.1 1,374,162 - +0.2 1,374,162 - -0.6 1,374,207 + -2.1 1,374,207 + -1.4 1,374,207 + -1.1 1,374,208 - -0.1 1,374,215 + +0.9 1,374,349 + +0.7 1,374,349 + +0.9 1,374,350 - +0.7 1,374,359 + -2.1 1,374,359 + +0.2 1,374,360 - +0.2 1,374,360 - -0.3 1,374,369 - -1.5 1,374,369 - -0.2 1,374,371 + +0.1 1,374,372 - -0.8 1,374,372 - +0.7 1,374,390 + +1.0 1,374,391 - -0.4 1,374,437 + -0.8 1,374,437 + -1.4 1,374,437 + -0.6 1,374,437 + -2.1 1,374,437 + +0.0 1,374,437 + +0.6 1,374,437 + +0.2 1,374,437 + -0.9 1,374,437 + +0.9 1,374,437 + -1.1 1,374,437 + -0.4 1,374,438 - -0.5 1,374,438 - +1.2 1,374,438 - -0.9 1,374,438 - +0.1 1,374,438 - -1.3 1,374,438 - +0.2 1,374,438 - -0.9 1,374,438 - -0.1 1,374,438 - -0.3 1,374,438 - -2.2 1,374,438 - +0.1 1,374,438 - +0.9 1,374,438 - -0.1 1,374,438 - -0.3 1,374,438 - -0.3 1,374,438 - -0.3 1,374,438 - -0.8 1,374,438 - -1.7 1,374,438 - +0.9
Or see this region's nucleotide sequence