Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03800 and DZA65_RS03805 are separated by 142 nucleotides DZA65_RS03805 and DZA65_RS03810 are separated by 108 nucleotides DZA65_RS03810 and DZA65_RS03815 are separated by 132 nucleotides
DZA65_RS03800: DZA65_RS03800 - hypothetical protein, at 807,424 to 807,846
_RS03800
DZA65_RS03805: DZA65_RS03805 - GNAT family N-acetyltransferase, at 807,989 to 808,534
_RS03805
DZA65_RS03810: DZA65_RS03810 - YnfC family lipoprotein, at 808,643 to 809,368
_RS03810
DZA65_RS03815: DZA65_RS03815 - glycosyl hydrolase 43 family protein, at 809,501 to 811,069
_RS03815
Position (kb) 808
809
810 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 807.655 kb on + strand, within DZA65_RS03800 at 807.748 kb on + strand, within DZA65_RS03800 at 807.756 kb on + strand, within DZA65_RS03800 at 807.791 kb on - strand, within DZA65_RS03800 at 807.800 kb on - strand, within DZA65_RS03800 at 807.838 kb on + strand at 807.839 kb on - strand at 807.839 kb on - strand at 807.839 kb on - strand at 807.839 kb on - strand at 807.839 kb on - strand at 807.839 kb on - strand at 807.869 kb on + strand at 807.869 kb on + strand at 807.869 kb on + strand at 807.870 kb on - strand at 807.936 kb on + strand at 807.936 kb on + strand at 807.936 kb on + strand at 807.936 kb on + strand at 807.937 kb on - strand at 808.193 kb on + strand, within DZA65_RS03805 at 808.335 kb on + strand, within DZA65_RS03805 at 808.336 kb on - strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.376 kb on + strand, within DZA65_RS03805 at 808.377 kb on - strand, within DZA65_RS03805 at 808.377 kb on - strand, within DZA65_RS03805 at 808.377 kb on - strand, within DZA65_RS03805 at 808.499 kb on + strand at 808.499 kb on + strand at 808.499 kb on + strand at 808.499 kb on + strand at 808.499 kb on + strand at 808.499 kb on + strand at 808.499 kb on + strand at 808.500 kb on - strand at 808.500 kb on - strand at 808.500 kb on - strand at 808.574 kb on + strand at 808.575 kb on - strand at 808.575 kb on - strand at 808.575 kb on - strand at 808.580 kb on + strand at 808.580 kb on + strand at 808.580 kb on + strand at 808.581 kb on - strand at 808.581 kb on - strand at 808.589 kb on + strand at 808.589 kb on + strand at 808.589 kb on + strand at 808.589 kb on + strand at 808.589 kb on + strand at 808.589 kb on + strand at 808.605 kb on - strand at 808.627 kb on - strand at 808.627 kb on - strand at 808.627 kb on - strand at 808.642 kb on + strand at 808.642 kb on + strand at 808.642 kb on + strand at 808.642 kb on + strand at 808.642 kb on + strand at 808.642 kb on + strand at 808.643 kb on - strand at 808.650 kb on + strand at 808.650 kb on + strand at 808.650 kb on + strand at 808.650 kb on + strand at 808.651 kb on - strand at 808.651 kb on - strand at 808.678 kb on - strand at 808.678 kb on - strand at 808.680 kb on + strand at 808.681 kb on - strand at 808.681 kb on - strand at 808.681 kb on - strand at 808.829 kb on + strand, within DZA65_RS03810 at 808.829 kb on + strand, within DZA65_RS03810 at 808.829 kb on + strand, within DZA65_RS03810 at 808.829 kb on + strand, within DZA65_RS03810 at 808.829 kb on + strand, within DZA65_RS03810 at 808.829 kb on + strand, within DZA65_RS03810 at 808.830 kb on - strand, within DZA65_RS03810 at 808.830 kb on - strand, within DZA65_RS03810 at 808.830 kb on - strand, within DZA65_RS03810 at 808.830 kb on - strand, within DZA65_RS03810 at 808.830 kb on - strand, within DZA65_RS03810 at 808.830 kb on - strand, within DZA65_RS03810 at 808.880 kb on + strand, within DZA65_RS03810 at 808.880 kb on + strand, within DZA65_RS03810 at 808.880 kb on + strand, within DZA65_RS03810 at 808.880 kb on + strand, within DZA65_RS03810 at 808.880 kb on + strand, within DZA65_RS03810 at 808.880 kb on + strand, within DZA65_RS03810 at 808.881 kb on - strand, within DZA65_RS03810 at 809.033 kb on + strand, within DZA65_RS03810 at 809.033 kb on + strand, within DZA65_RS03810 at 809.033 kb on + strand, within DZA65_RS03810 at 809.033 kb on + strand, within DZA65_RS03810 at 809.033 kb on + strand, within DZA65_RS03810 at 809.033 kb on + strand, within DZA65_RS03810 at 809.033 kb on + strand, within DZA65_RS03810 at 809.033 kb on + strand, within DZA65_RS03810 at 809.033 kb on + strand, within DZA65_RS03810 at 809.033 kb on + strand, within DZA65_RS03810 at 809.033 kb on + strand, within DZA65_RS03810 at 809.033 kb on + strand, within DZA65_RS03810 at 809.033 kb on + strand, within DZA65_RS03810 at 809.033 kb on + strand, within DZA65_RS03810 at 809.033 kb on + strand, within DZA65_RS03810 at 809.033 kb on + strand, within DZA65_RS03810 at 809.034 kb on - strand, within DZA65_RS03810 at 809.034 kb on - strand, within DZA65_RS03810 at 809.034 kb on - strand, within DZA65_RS03810 at 809.034 kb on - strand, within DZA65_RS03810 at 809.034 kb on - strand, within DZA65_RS03810 at 809.034 kb on - strand, within DZA65_RS03810 at 809.034 kb on - strand, within DZA65_RS03810 at 809.034 kb on - strand, within DZA65_RS03810 at 809.034 kb on - strand, within DZA65_RS03810 at 809.034 kb on - strand, within DZA65_RS03810 at 809.038 kb on + strand, within DZA65_RS03810 at 809.054 kb on + strand, within DZA65_RS03810 at 809.055 kb on - strand, within DZA65_RS03810 at 809.084 kb on + strand, within DZA65_RS03810 at 809.085 kb on - strand, within DZA65_RS03810 at 809.085 kb on - strand, within DZA65_RS03810 at 809.085 kb on - strand, within DZA65_RS03810 at 809.085 kb on - strand, within DZA65_RS03810 at 809.085 kb on - strand, within DZA65_RS03810 at 809.157 kb on + strand, within DZA65_RS03810 at 809.158 kb on - strand, within DZA65_RS03810 at 809.158 kb on - strand, within DZA65_RS03810 at 809.158 kb on - strand, within DZA65_RS03810 at 809.158 kb on - strand, within DZA65_RS03810 at 809.221 kb on + strand, within DZA65_RS03810 at 809.222 kb on - strand, within DZA65_RS03810 at 809.344 kb on + strand at 809.344 kb on + strand at 809.344 kb on + strand at 809.344 kb on + strand at 809.345 kb on - strand at 809.360 kb on + strand at 809.361 kb on - strand at 809.361 kb on - strand at 809.361 kb on - strand at 809.363 kb on + strand at 809.363 kb on + strand at 809.363 kb on + strand at 809.363 kb on + strand at 809.364 kb on - strand at 809.364 kb on - strand at 809.364 kb on - strand at 809.364 kb on - strand at 809.364 kb on - strand at 809.364 kb on - strand at 809.364 kb on - strand at 809.364 kb on - strand at 809.364 kb on - strand at 809.364 kb on - strand at 809.366 kb on + strand at 809.366 kb on + strand at 809.366 kb on + strand at 809.367 kb on - strand at 809.367 kb on - strand at 809.367 kb on - strand at 809.395 kb on + strand at 809.395 kb on + strand at 809.395 kb on + strand at 809.396 kb on - strand at 809.396 kb on - strand at 809.449 kb on + strand at 809.449 kb on + strand at 809.449 kb on + strand at 809.449 kb on + strand at 809.449 kb on + strand at 809.449 kb on + strand at 809.450 kb on - strand at 809.450 kb on - strand at 809.451 kb on + strand at 809.451 kb on + strand at 809.452 kb on - strand at 809.452 kb on - strand at 809.452 kb on - strand at 809.572 kb on - strand at 809.732 kb on + strand, within DZA65_RS03815 at 809.732 kb on + strand, within DZA65_RS03815 at 809.732 kb on + strand, within DZA65_RS03815 at 809.732 kb on + strand, within DZA65_RS03815 at 809.733 kb on - strand, within DZA65_RS03815 at 809.749 kb on - strand, within DZA65_RS03815 at 809.749 kb on - strand, within DZA65_RS03815 at 809.850 kb on + strand, within DZA65_RS03815 at 809.851 kb on - strand, within DZA65_RS03815 at 809.851 kb on - strand, within DZA65_RS03815 at 810.033 kb on + strand, within DZA65_RS03815 at 810.034 kb on - strand, within DZA65_RS03815 at 810.242 kb on + strand, within DZA65_RS03815 at 810.242 kb on + strand, within DZA65_RS03815 at 810.255 kb on + strand, within DZA65_RS03815 at 810.255 kb on + strand, within DZA65_RS03815 at 810.256 kb on - strand, within DZA65_RS03815 at 810.256 kb on - strand, within DZA65_RS03815
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 807,655 + DZA65_RS03800 0.55 -0.4 807,748 + DZA65_RS03800 0.77 -0.1 807,756 + DZA65_RS03800 0.78 -0.5 807,791 - DZA65_RS03800 0.87 -0.9 807,800 - DZA65_RS03800 0.89 +1.3 807,838 + -0.2 807,839 - +0.1 807,839 - -0.7 807,839 - +1.5 807,839 - -0.4 807,839 - -0.1 807,839 - -0.3 807,869 + -0.5 807,869 + -1.4 807,869 + +0.2 807,870 - -0.6 807,936 + -0.2 807,936 + +1.1 807,936 + +0.7 807,936 + -1.7 807,937 - -0.8 808,193 + DZA65_RS03805 0.37 -0.2 808,335 + DZA65_RS03805 0.63 -0.6 808,336 - DZA65_RS03805 0.64 +0.1 808,376 + DZA65_RS03805 0.71 -0.3 808,376 + DZA65_RS03805 0.71 -0.8 808,376 + DZA65_RS03805 0.71 +0.4 808,376 + DZA65_RS03805 0.71 -0.1 808,376 + DZA65_RS03805 0.71 -0.5 808,376 + DZA65_RS03805 0.71 -0.0 808,376 + DZA65_RS03805 0.71 +0.4 808,376 + DZA65_RS03805 0.71 +0.2 808,376 + DZA65_RS03805 0.71 +2.9 808,377 - DZA65_RS03805 0.71 -0.4 808,377 - DZA65_RS03805 0.71 -0.1 808,377 - DZA65_RS03805 0.71 +0.8 808,499 + +2.7 808,499 + +0.2 808,499 + -0.2 808,499 + -1.1 808,499 + +0.3 808,499 + -0.8 808,499 + -1.4 808,500 - +2.4 808,500 - +0.8 808,500 - +2.1 808,574 + +0.4 808,575 - -0.7 808,575 - -0.3 808,575 - -1.2 808,580 + +1.1 808,580 + +0.4 808,580 + -1.7 808,581 - -0.4 808,581 - -0.6 808,589 + -0.1 808,589 + +0.8 808,589 + +1.1 808,589 + -1.7 808,589 + -0.5 808,589 + +1.5 808,605 - -0.3 808,627 - -1.7 808,627 - +1.2 808,627 - +0.0 808,642 + -1.1 808,642 + -1.4 808,642 + -1.0 808,642 + +0.9 808,642 + -0.3 808,642 + -0.4 808,643 - -0.4 808,650 + -0.0 808,650 + +0.1 808,650 + +0.8 808,650 + -0.3 808,651 - -1.0 808,651 - +1.2 808,678 - +0.1 808,678 - -1.0 808,680 + +0.5 808,681 - -0.3 808,681 - +0.5 808,681 - -0.3 808,829 + DZA65_RS03810 0.26 +0.4 808,829 + DZA65_RS03810 0.26 -1.0 808,829 + DZA65_RS03810 0.26 +1.1 808,829 + DZA65_RS03810 0.26 +0.8 808,829 + DZA65_RS03810 0.26 +0.6 808,829 + DZA65_RS03810 0.26 +0.1 808,830 - DZA65_RS03810 0.26 -0.6 808,830 - DZA65_RS03810 0.26 +0.3 808,830 - DZA65_RS03810 0.26 -0.5 808,830 - DZA65_RS03810 0.26 +0.1 808,830 - DZA65_RS03810 0.26 +0.5 808,830 - DZA65_RS03810 0.26 -0.2 808,880 + DZA65_RS03810 0.33 -1.9 808,880 + DZA65_RS03810 0.33 -0.5 808,880 + DZA65_RS03810 0.33 +1.5 808,880 + DZA65_RS03810 0.33 +0.5 808,880 + DZA65_RS03810 0.33 +1.4 808,880 + DZA65_RS03810 0.33 -0.1 808,881 - DZA65_RS03810 0.33 -1.6 809,033 + DZA65_RS03810 0.54 -0.7 809,033 + DZA65_RS03810 0.54 -1.4 809,033 + DZA65_RS03810 0.54 +0.1 809,033 + DZA65_RS03810 0.54 -0.5 809,033 + DZA65_RS03810 0.54 +0.1 809,033 + DZA65_RS03810 0.54 -0.0 809,033 + DZA65_RS03810 0.54 +0.1 809,033 + DZA65_RS03810 0.54 -0.1 809,033 + DZA65_RS03810 0.54 -2.1 809,033 + DZA65_RS03810 0.54 +0.4 809,033 + DZA65_RS03810 0.54 +0.4 809,033 + DZA65_RS03810 0.54 -1.7 809,033 + DZA65_RS03810 0.54 -0.7 809,033 + DZA65_RS03810 0.54 -0.2 809,033 + DZA65_RS03810 0.54 -0.1 809,033 + DZA65_RS03810 0.54 +0.7 809,034 - DZA65_RS03810 0.54 -0.5 809,034 - DZA65_RS03810 0.54 +0.9 809,034 - DZA65_RS03810 0.54 -0.0 809,034 - DZA65_RS03810 0.54 +0.4 809,034 - DZA65_RS03810 0.54 +0.0 809,034 - DZA65_RS03810 0.54 +0.4 809,034 - DZA65_RS03810 0.54 +0.8 809,034 - DZA65_RS03810 0.54 -0.1 809,034 - DZA65_RS03810 0.54 -0.6 809,034 - DZA65_RS03810 0.54 -0.2 809,038 + DZA65_RS03810 0.54 -0.3 809,054 + DZA65_RS03810 0.57 -0.0 809,055 - DZA65_RS03810 0.57 -0.1 809,084 + DZA65_RS03810 0.61 -0.9 809,085 - DZA65_RS03810 0.61 +1.2 809,085 - DZA65_RS03810 0.61 -0.5 809,085 - DZA65_RS03810 0.61 +0.6 809,085 - DZA65_RS03810 0.61 +0.0 809,085 - DZA65_RS03810 0.61 +0.7 809,157 + DZA65_RS03810 0.71 +0.2 809,158 - DZA65_RS03810 0.71 -0.1 809,158 - DZA65_RS03810 0.71 +0.1 809,158 - DZA65_RS03810 0.71 -0.2 809,158 - DZA65_RS03810 0.71 -0.5 809,221 + DZA65_RS03810 0.80 +0.5 809,222 - DZA65_RS03810 0.80 +1.1 809,344 + -0.5 809,344 + -1.0 809,344 + -0.3 809,344 + -0.5 809,345 - -0.1 809,360 + +1.4 809,361 - -0.2 809,361 - -0.5 809,361 - +0.4 809,363 + -0.5 809,363 + +1.3 809,363 + +0.4 809,363 + -0.9 809,364 - -0.8 809,364 - +1.1 809,364 - +0.4 809,364 - +0.7 809,364 - -0.9 809,364 - +1.1 809,364 - +0.6 809,364 - -0.1 809,364 - -0.0 809,364 - +0.7 809,366 + -0.2 809,366 + -0.4 809,366 + -0.4 809,367 - +0.2 809,367 - -0.5 809,367 - -1.4 809,395 + -0.2 809,395 + +0.2 809,395 + -1.0 809,396 - -1.2 809,396 - -0.8 809,449 + +1.1 809,449 + +0.2 809,449 + -1.1 809,449 + -2.0 809,449 + -0.5 809,449 + -2.8 809,450 - +0.6 809,450 - -0.0 809,451 + +0.1 809,451 + -0.6 809,452 - +1.1 809,452 - -1.4 809,452 - -0.0 809,572 - -0.1 809,732 + DZA65_RS03815 0.15 +1.1 809,732 + DZA65_RS03815 0.15 -0.5 809,732 + DZA65_RS03815 0.15 +0.2 809,732 + DZA65_RS03815 0.15 +0.5 809,733 - DZA65_RS03815 0.15 -0.6 809,749 - DZA65_RS03815 0.16 -0.1 809,749 - DZA65_RS03815 0.16 -0.1 809,850 + DZA65_RS03815 0.22 +0.7 809,851 - DZA65_RS03815 0.22 -0.4 809,851 - DZA65_RS03815 0.22 +0.1 810,033 + DZA65_RS03815 0.34 -1.1 810,034 - DZA65_RS03815 0.34 -1.1 810,242 + DZA65_RS03815 0.47 +1.1 810,242 + DZA65_RS03815 0.47 -0.0 810,255 + DZA65_RS03815 0.48 -1.2 810,255 + DZA65_RS03815 0.48 -0.4 810,256 - DZA65_RS03815 0.48 -1.0 810,256 - DZA65_RS03815 0.48 -0.0
Or see this region's nucleotide sequence