Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03705 and DZA65_RS03710 are separated by 546 nucleotides DZA65_RS03710 and DZA65_RS03715 are separated by 840 nucleotides
DZA65_RS03705: DZA65_RS03705 - hypothetical protein, at 782,037 to 782,429
_RS03705
DZA65_RS03710: DZA65_RS03710 - TonB-dependent siderophore receptor, at 782,976 to 783,270
_RS03710
DZA65_RS03715: DZA65_RS03715 - mandelate racemase, at 784,111 to 785,265
_RS03715
Position (kb) 782
783
784 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 782.017 kb on + strand at 782.017 kb on + strand at 782.018 kb on - strand at 782.018 kb on - strand at 782.018 kb on - strand at 782.018 kb on - strand at 782.036 kb on + strand at 782.036 kb on + strand at 782.036 kb on + strand at 782.036 kb on + strand at 782.036 kb on + strand at 782.036 kb on + strand at 782.037 kb on - strand at 782.037 kb on - strand at 782.037 kb on - strand at 782.072 kb on + strand at 782.072 kb on + strand at 782.077 kb on + strand, within DZA65_RS03705 at 782.078 kb on - strand, within DZA65_RS03705 at 782.137 kb on + strand, within DZA65_RS03705 at 782.138 kb on - strand, within DZA65_RS03705 at 782.159 kb on + strand, within DZA65_RS03705 at 782.159 kb on + strand, within DZA65_RS03705 at 782.159 kb on + strand, within DZA65_RS03705 at 782.160 kb on - strand, within DZA65_RS03705 at 782.180 kb on + strand, within DZA65_RS03705 at 782.296 kb on + strand, within DZA65_RS03705 at 782.296 kb on + strand, within DZA65_RS03705 at 782.296 kb on + strand, within DZA65_RS03705 at 782.296 kb on + strand, within DZA65_RS03705 at 782.296 kb on + strand, within DZA65_RS03705 at 782.296 kb on + strand, within DZA65_RS03705 at 782.297 kb on - strand, within DZA65_RS03705 at 782.297 kb on - strand, within DZA65_RS03705 at 782.331 kb on - strand, within DZA65_RS03705 at 782.363 kb on + strand at 782.363 kb on + strand, within DZA65_RS03705 at 782.364 kb on - strand, within DZA65_RS03705 at 782.364 kb on - strand, within DZA65_RS03705 at 782.405 kb on + strand at 782.456 kb on + strand at 782.456 kb on + strand at 782.456 kb on + strand at 782.457 kb on - strand at 782.457 kb on - strand at 782.461 kb on + strand at 782.462 kb on - strand at 782.462 kb on - strand at 782.462 kb on - strand at 782.478 kb on + strand at 782.506 kb on + strand at 782.509 kb on + strand at 782.510 kb on - strand at 782.558 kb on + strand at 782.581 kb on + strand at 782.581 kb on + strand at 782.582 kb on - strand at 782.598 kb on - strand at 782.600 kb on + strand at 782.601 kb on - strand at 782.615 kb on + strand at 782.616 kb on - strand at 782.616 kb on - strand at 782.616 kb on - strand at 782.616 kb on - strand at 782.634 kb on + strand at 782.651 kb on + strand at 782.652 kb on - strand at 782.661 kb on + strand at 782.662 kb on - strand at 782.691 kb on + strand at 782.731 kb on - strand at 782.731 kb on - strand at 782.734 kb on + strand at 782.735 kb on - strand at 782.767 kb on - strand at 782.767 kb on - strand at 782.814 kb on - strand at 782.814 kb on - strand at 782.814 kb on - strand at 782.823 kb on + strand at 782.823 kb on + strand at 782.823 kb on + strand at 782.824 kb on - strand at 782.828 kb on + strand at 782.828 kb on + strand at 782.829 kb on - strand at 782.955 kb on + strand at 782.955 kb on + strand at 783.047 kb on + strand, within DZA65_RS03710 at 783.047 kb on + strand, within DZA65_RS03710 at 783.047 kb on + strand, within DZA65_RS03710 at 783.047 kb on + strand, within DZA65_RS03710 at 783.047 kb on + strand, within DZA65_RS03710 at 783.047 kb on + strand, within DZA65_RS03710 at 783.048 kb on - strand, within DZA65_RS03710 at 783.048 kb on - strand, within DZA65_RS03710 at 783.048 kb on - strand, within DZA65_RS03710 at 783.135 kb on - strand, within DZA65_RS03710 at 783.191 kb on + strand, within DZA65_RS03710 at 783.191 kb on + strand, within DZA65_RS03710 at 783.191 kb on + strand, within DZA65_RS03710 at 783.192 kb on - strand, within DZA65_RS03710 at 783.192 kb on - strand, within DZA65_RS03710 at 783.192 kb on - strand, within DZA65_RS03710 at 783.192 kb on - strand, within DZA65_RS03710 at 783.194 kb on + strand, within DZA65_RS03710 at 783.194 kb on + strand, within DZA65_RS03710 at 783.194 kb on + strand, within DZA65_RS03710 at 783.194 kb on + strand, within DZA65_RS03710 at 783.194 kb on + strand, within DZA65_RS03710 at 783.194 kb on + strand, within DZA65_RS03710 at 783.195 kb on - strand, within DZA65_RS03710 at 783.195 kb on - strand, within DZA65_RS03710 at 783.195 kb on - strand, within DZA65_RS03710 at 783.195 kb on - strand, within DZA65_RS03710 at 783.209 kb on - strand, within DZA65_RS03710 at 783.241 kb on + strand at 783.242 kb on - strand at 783.252 kb on + strand at 783.252 kb on + strand at 783.253 kb on - strand at 783.259 kb on + strand at 783.260 kb on - strand at 783.271 kb on + strand at 783.271 kb on + strand at 783.271 kb on + strand at 783.272 kb on - strand at 783.272 kb on - strand at 783.272 kb on - strand at 783.290 kb on + strand at 783.326 kb on + strand at 783.326 kb on + strand at 783.326 kb on + strand at 783.326 kb on + strand at 783.328 kb on + strand at 783.328 kb on + strand at 783.328 kb on + strand at 783.328 kb on + strand at 783.328 kb on + strand at 783.328 kb on + strand at 783.328 kb on + strand at 783.328 kb on + strand at 783.328 kb on + strand at 783.329 kb on - strand at 783.329 kb on - strand at 783.329 kb on - strand at 783.329 kb on - strand at 783.329 kb on - strand at 783.329 kb on - strand at 783.329 kb on - strand at 783.333 kb on + strand at 783.333 kb on + strand at 783.333 kb on + strand at 783.333 kb on + strand at 783.333 kb on + strand at 783.333 kb on + strand at 783.333 kb on + strand at 783.333 kb on + strand at 783.333 kb on + strand at 783.333 kb on + strand at 783.333 kb on + strand at 783.333 kb on + strand at 783.333 kb on + strand at 783.334 kb on - strand at 783.334 kb on - strand at 783.334 kb on - strand at 783.334 kb on - strand at 783.334 kb on - strand at 783.334 kb on - strand at 783.334 kb on - strand at 783.334 kb on - strand at 783.334 kb on - strand at 783.334 kb on - strand at 783.334 kb on - strand at 783.334 kb on - strand at 783.335 kb on + strand at 783.335 kb on + strand at 783.336 kb on - strand at 783.336 kb on - strand at 783.344 kb on + strand at 783.399 kb on + strand at 783.399 kb on + strand at 783.399 kb on + strand at 783.400 kb on - strand at 783.400 kb on - strand at 783.400 kb on - strand at 783.404 kb on + strand at 783.404 kb on + strand at 783.466 kb on + strand at 783.466 kb on + strand at 783.466 kb on + strand at 783.469 kb on + strand at 783.469 kb on + strand at 783.469 kb on + strand at 783.470 kb on - strand at 783.470 kb on - strand at 783.470 kb on - strand at 783.470 kb on - strand at 783.470 kb on - strand at 783.470 kb on - strand at 783.496 kb on + strand at 783.497 kb on - strand at 783.505 kb on + strand at 783.505 kb on + strand at 783.506 kb on - strand at 783.506 kb on - strand at 783.506 kb on - strand at 783.506 kb on - strand at 783.506 kb on - strand at 783.506 kb on - strand at 783.506 kb on - strand at 783.507 kb on + strand at 783.507 kb on + strand at 783.507 kb on + strand at 783.507 kb on + strand at 783.507 kb on + strand at 783.507 kb on + strand at 783.508 kb on - strand at 783.508 kb on - strand at 783.508 kb on - strand at 783.508 kb on - strand at 783.508 kb on - strand at 783.508 kb on - strand at 783.508 kb on - strand at 783.508 kb on - strand at 783.508 kb on - strand at 783.538 kb on + strand at 783.538 kb on + strand at 783.539 kb on - strand at 783.539 kb on - strand at 783.625 kb on - strand at 783.625 kb on - strand at 783.625 kb on - strand at 783.625 kb on - strand at 783.672 kb on - strand at 783.734 kb on + strand at 783.734 kb on + strand at 783.734 kb on + strand at 783.735 kb on - strand at 783.735 kb on - strand at 783.735 kb on - strand at 783.735 kb on - strand at 783.735 kb on - strand at 783.866 kb on + strand at 783.867 kb on - strand at 783.898 kb on + strand at 783.899 kb on - strand at 783.899 kb on - strand at 783.899 kb on - strand at 783.944 kb on - strand at 783.948 kb on - strand at 783.948 kb on - strand at 783.981 kb on + strand at 783.982 kb on - strand at 783.987 kb on + strand at 783.987 kb on + strand at 783.988 kb on - strand at 783.997 kb on + strand at 783.997 kb on + strand at 783.997 kb on + strand at 783.998 kb on - strand at 783.998 kb on - strand at 783.998 kb on - strand at 783.998 kb on - strand at 783.998 kb on - strand at 783.999 kb on + strand at 783.999 kb on + strand at 784.000 kb on - strand at 784.000 kb on - strand at 784.017 kb on + strand at 784.018 kb on - strand at 784.032 kb on + strand at 784.032 kb on + strand at 784.032 kb on + strand at 784.032 kb on + strand at 784.032 kb on + strand at 784.033 kb on - strand at 784.033 kb on - strand at 784.033 kb on - strand at 784.033 kb on - strand at 784.034 kb on + strand at 784.034 kb on + strand at 784.034 kb on + strand at 784.034 kb on + strand at 784.034 kb on + strand at 784.034 kb on + strand at 784.034 kb on + strand at 784.035 kb on - strand at 784.062 kb on + strand at 784.063 kb on - strand at 784.065 kb on + strand at 784.080 kb on - strand at 784.080 kb on - strand at 784.088 kb on + strand at 784.089 kb on - strand at 784.089 kb on - strand at 784.089 kb on - strand at 784.093 kb on - strand at 784.093 kb on - strand at 784.105 kb on - strand at 784.119 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 782,017 + -0.6 782,017 + -0.4 782,018 - -0.1 782,018 - -0.9 782,018 - +1.4 782,018 - -0.7 782,036 + -0.2 782,036 + -0.7 782,036 + -1.1 782,036 + +0.1 782,036 + -1.5 782,036 + -0.9 782,037 - -0.7 782,037 - +0.2 782,037 - -1.2 782,072 + -1.0 782,072 + -0.9 782,077 + DZA65_RS03705 0.10 -1.5 782,078 - DZA65_RS03705 0.10 +0.9 782,137 + DZA65_RS03705 0.25 -0.5 782,138 - DZA65_RS03705 0.26 -0.6 782,159 + DZA65_RS03705 0.31 -0.1 782,159 + DZA65_RS03705 0.31 +0.6 782,159 + DZA65_RS03705 0.31 +0.4 782,160 - DZA65_RS03705 0.31 -0.5 782,180 + DZA65_RS03705 0.36 -1.1 782,296 + DZA65_RS03705 0.66 +0.1 782,296 + DZA65_RS03705 0.66 -0.9 782,296 + DZA65_RS03705 0.66 +1.8 782,296 + DZA65_RS03705 0.66 -1.3 782,296 + DZA65_RS03705 0.66 -0.1 782,296 + DZA65_RS03705 0.66 +0.4 782,297 - DZA65_RS03705 0.66 -0.8 782,297 - DZA65_RS03705 0.66 -0.8 782,331 - DZA65_RS03705 0.75 -1.2 782,363 + +0.1 782,363 + DZA65_RS03705 0.83 -1.3 782,364 - DZA65_RS03705 0.83 -1.2 782,364 - DZA65_RS03705 0.83 -1.0 782,405 + -0.4 782,456 + -1.3 782,456 + -0.2 782,456 + +0.5 782,457 - -0.5 782,457 - -0.4 782,461 + -0.3 782,462 - -0.2 782,462 - -1.2 782,462 - +0.4 782,478 + -1.5 782,506 + -0.4 782,509 + +0.4 782,510 - +0.2 782,558 + +0.2 782,581 + +0.1 782,581 + +0.5 782,582 - +0.4 782,598 - -0.1 782,600 + +0.4 782,601 - -0.2 782,615 + -0.3 782,616 - +0.4 782,616 - +0.7 782,616 - +1.1 782,616 - +0.1 782,634 + -0.7 782,651 + +1.8 782,652 - +0.6 782,661 + -0.7 782,662 - -0.5 782,691 + +1.9 782,731 - +1.9 782,731 - +1.1 782,734 + +0.4 782,735 - -0.7 782,767 - +0.4 782,767 - +0.1 782,814 - -0.3 782,814 - +0.2 782,814 - -0.3 782,823 + -0.6 782,823 + -0.3 782,823 + -1.1 782,824 - -0.3 782,828 + -1.0 782,828 + +0.6 782,829 - +1.0 782,955 + -0.5 782,955 + -0.6 783,047 + DZA65_RS03710 0.24 -0.8 783,047 + DZA65_RS03710 0.24 +0.9 783,047 + DZA65_RS03710 0.24 +0.6 783,047 + DZA65_RS03710 0.24 -0.1 783,047 + DZA65_RS03710 0.24 -0.3 783,047 + DZA65_RS03710 0.24 -0.0 783,048 - DZA65_RS03710 0.24 -1.6 783,048 - DZA65_RS03710 0.24 +0.3 783,048 - DZA65_RS03710 0.24 -0.6 783,135 - DZA65_RS03710 0.54 -1.2 783,191 + DZA65_RS03710 0.73 -0.7 783,191 + DZA65_RS03710 0.73 +0.5 783,191 + DZA65_RS03710 0.73 -1.3 783,192 - DZA65_RS03710 0.73 +0.1 783,192 - DZA65_RS03710 0.73 +1.1 783,192 - DZA65_RS03710 0.73 -1.5 783,192 - DZA65_RS03710 0.73 +1.1 783,194 + DZA65_RS03710 0.74 -0.1 783,194 + DZA65_RS03710 0.74 -2.4 783,194 + DZA65_RS03710 0.74 +0.1 783,194 + DZA65_RS03710 0.74 -0.2 783,194 + DZA65_RS03710 0.74 -2.5 783,194 + DZA65_RS03710 0.74 -1.1 783,195 - DZA65_RS03710 0.74 -1.2 783,195 - DZA65_RS03710 0.74 -1.3 783,195 - DZA65_RS03710 0.74 -0.2 783,195 - DZA65_RS03710 0.74 -0.3 783,209 - DZA65_RS03710 0.79 +0.2 783,241 + -0.6 783,242 - +0.1 783,252 + +0.2 783,252 + -0.7 783,253 - -0.9 783,259 + -0.5 783,260 - -0.4 783,271 + -0.1 783,271 + +0.2 783,271 + -1.8 783,272 - +0.2 783,272 - +1.5 783,272 - +1.1 783,290 + -0.5 783,326 + -0.3 783,326 + -0.0 783,326 + +0.3 783,326 + +0.0 783,328 + +0.6 783,328 + +1.3 783,328 + +0.1 783,328 + +1.1 783,328 + +0.4 783,328 + -1.8 783,328 + +0.6 783,328 + +0.6 783,328 + +0.7 783,329 - +1.3 783,329 - -1.2 783,329 - +0.0 783,329 - -1.1 783,329 - +0.1 783,329 - -0.1 783,329 - -0.6 783,333 + -0.8 783,333 + +0.1 783,333 + -0.1 783,333 + +0.4 783,333 + -0.6 783,333 + -2.2 783,333 + +1.0 783,333 + +0.4 783,333 + -1.2 783,333 + -0.4 783,333 + -1.4 783,333 + -0.3 783,333 + -0.0 783,334 - +0.2 783,334 - -0.2 783,334 - -0.9 783,334 - -0.5 783,334 - -1.2 783,334 - +0.1 783,334 - -0.3 783,334 - +0.4 783,334 - -2.0 783,334 - -0.1 783,334 - -0.2 783,334 - +0.9 783,335 + -0.5 783,335 + +0.6 783,336 - +0.2 783,336 - +0.1 783,344 + +0.2 783,399 + -0.1 783,399 + -0.2 783,399 + -1.1 783,400 - +0.8 783,400 - -1.2 783,400 - +0.1 783,404 + +0.5 783,404 + +1.2 783,466 + +0.1 783,466 + -1.2 783,466 + -0.0 783,469 + +0.1 783,469 + +0.7 783,469 + +0.6 783,470 - -1.2 783,470 - -0.2 783,470 - +0.4 783,470 - -0.7 783,470 - -0.3 783,470 - +0.1 783,496 + +0.3 783,497 - +0.9 783,505 + -3.2 783,505 + -0.1 783,506 - -0.8 783,506 - +0.7 783,506 - -1.2 783,506 - +0.6 783,506 - +1.1 783,506 - -0.4 783,506 - +0.2 783,507 + +0.0 783,507 + -2.2 783,507 + -1.0 783,507 + -1.2 783,507 + +0.7 783,507 + -1.2 783,508 - -0.0 783,508 - -0.3 783,508 - +0.5 783,508 - +0.5 783,508 - -1.0 783,508 - +0.1 783,508 - -0.4 783,508 - +0.1 783,508 - -2.7 783,538 + -0.1 783,538 + +1.2 783,539 - +0.4 783,539 - +1.1 783,625 - +0.3 783,625 - -0.4 783,625 - -0.6 783,625 - +0.2 783,672 - +0.8 783,734 + +0.4 783,734 + +1.3 783,734 + +0.2 783,735 - +0.3 783,735 - +0.2 783,735 - +0.6 783,735 - -0.1 783,735 - -2.7 783,866 + +0.5 783,867 - -0.3 783,898 + +0.8 783,899 - +0.4 783,899 - -1.5 783,899 - -0.7 783,944 - +0.6 783,948 - +0.1 783,948 - +0.2 783,981 + -0.8 783,982 - -0.2 783,987 + -0.7 783,987 + -0.3 783,988 - +0.1 783,997 + +0.7 783,997 + +1.4 783,997 + +0.1 783,998 - -1.4 783,998 - -0.3 783,998 - -1.4 783,998 - +0.5 783,998 - -0.5 783,999 + +0.6 783,999 + +0.5 784,000 - -0.3 784,000 - -0.5 784,017 + -0.3 784,018 - -0.3 784,032 + -0.1 784,032 + +0.5 784,032 + -1.2 784,032 + -1.0 784,032 + -1.4 784,033 - -0.1 784,033 - +0.1 784,033 - -0.1 784,033 - +1.0 784,034 + +0.4 784,034 + +1.2 784,034 + -1.2 784,034 + -1.2 784,034 + +1.4 784,034 + +0.2 784,034 + -0.3 784,035 - -0.6 784,062 + +0.3 784,063 - +0.3 784,065 + +0.4 784,080 - -0.3 784,080 - -0.4 784,088 + -0.2 784,089 - -1.4 784,089 - -0.4 784,089 - -1.5 784,093 - -0.6 784,093 - +0.2 784,105 - -1.2 784,119 - +0.7
Or see this region's nucleotide sequence