Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01680 and DZA65_RS01685 are separated by 59 nucleotides DZA65_RS01685 and DZA65_RS01695 are separated by 598 nucleotides
DZA65_RS01680: DZA65_RS01680 - penicillin-binding protein activator, at 364,815 to 366,866
_RS01680
DZA65_RS01685: DZA65_RS01685 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 366,926 to 367,795
_RS01685
DZA65_RS01695: DZA65_RS01695 - 4,5-DOPA dioxygenase extradiol, at 368,394 to 369,182
_RS01695
Position (kb) 366
367
368 Strain fitness (log2 ratio) -2
-1
0
1
2 at 366.186 kb on + strand, within DZA65_RS01680 at 366.186 kb on + strand, within DZA65_RS01680 at 366.187 kb on - strand, within DZA65_RS01680 at 366.187 kb on - strand, within DZA65_RS01680 at 366.206 kb on + strand, within DZA65_RS01680 at 366.207 kb on - strand, within DZA65_RS01680 at 366.263 kb on + strand, within DZA65_RS01680 at 366.263 kb on + strand, within DZA65_RS01680 at 366.264 kb on - strand, within DZA65_RS01680 at 366.264 kb on - strand, within DZA65_RS01680 at 366.318 kb on + strand, within DZA65_RS01680 at 366.388 kb on + strand, within DZA65_RS01680 at 366.388 kb on + strand, within DZA65_RS01680 at 366.388 kb on + strand, within DZA65_RS01680 at 366.389 kb on - strand, within DZA65_RS01680 at 366.445 kb on + strand, within DZA65_RS01680 at 366.445 kb on + strand, within DZA65_RS01680 at 366.445 kb on + strand, within DZA65_RS01680 at 366.448 kb on + strand, within DZA65_RS01680 at 366.660 kb on + strand, within DZA65_RS01680 at 366.660 kb on + strand, within DZA65_RS01680 at 366.660 kb on + strand, within DZA65_RS01680 at 366.660 kb on + strand, within DZA65_RS01680 at 366.660 kb on + strand, within DZA65_RS01680 at 366.660 kb on + strand, within DZA65_RS01680 at 366.661 kb on - strand at 366.661 kb on - strand at 366.661 kb on - strand at 366.661 kb on - strand at 366.679 kb on + strand at 366.680 kb on + strand at 366.680 kb on + strand at 366.680 kb on + strand at 366.681 kb on - strand at 366.712 kb on + strand at 366.712 kb on + strand at 366.713 kb on - strand at 366.713 kb on - strand at 366.713 kb on - strand at 366.716 kb on - strand at 366.744 kb on + strand at 366.744 kb on + strand at 366.744 kb on + strand at 366.745 kb on - strand at 366.745 kb on - strand at 366.745 kb on - strand at 366.866 kb on + strand at 366.866 kb on + strand at 366.866 kb on + strand at 366.866 kb on + strand at 366.866 kb on + strand at 366.867 kb on - strand at 366.867 kb on - strand at 366.867 kb on - strand at 366.867 kb on - strand at 366.867 kb on - strand at 366.867 kb on - strand at 366.871 kb on + strand at 366.872 kb on - strand at 366.872 kb on - strand at 366.887 kb on - strand at 366.899 kb on + strand at 366.900 kb on - strand at 366.902 kb on + strand at 366.902 kb on + strand at 366.902 kb on + strand at 366.903 kb on - strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.968 kb on + strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 366.969 kb on - strand at 367.045 kb on + strand, within DZA65_RS01685 at 367.077 kb on + strand, within DZA65_RS01685 at 367.084 kb on - strand, within DZA65_RS01685 at 367.084 kb on - strand, within DZA65_RS01685 at 367.099 kb on + strand, within DZA65_RS01685 at 367.099 kb on + strand, within DZA65_RS01685 at 367.346 kb on + strand, within DZA65_RS01685 at 367.346 kb on + strand, within DZA65_RS01685 at 367.347 kb on - strand, within DZA65_RS01685 at 367.381 kb on + strand, within DZA65_RS01685 at 367.381 kb on + strand, within DZA65_RS01685 at 367.388 kb on - strand, within DZA65_RS01685 at 367.456 kb on + strand, within DZA65_RS01685 at 367.496 kb on + strand, within DZA65_RS01685 at 367.496 kb on + strand, within DZA65_RS01685 at 367.496 kb on + strand, within DZA65_RS01685 at 367.497 kb on - strand, within DZA65_RS01685 at 367.497 kb on - strand, within DZA65_RS01685 at 367.542 kb on - strand, within DZA65_RS01685 at 367.618 kb on - strand, within DZA65_RS01685 at 367.618 kb on - strand, within DZA65_RS01685 at 367.669 kb on + strand, within DZA65_RS01685 at 367.669 kb on + strand, within DZA65_RS01685 at 367.669 kb on + strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.670 kb on - strand, within DZA65_RS01685 at 367.794 kb on - strand at 367.794 kb on - strand at 368.252 kb on - strand at 368.321 kb on + strand at 368.335 kb on + strand at 368.335 kb on + strand at 368.336 kb on - strand at 368.336 kb on - strand at 368.336 kb on - strand at 368.341 kb on + strand at 368.341 kb on + strand at 368.342 kb on - strand at 368.342 kb on - strand at 368.346 kb on + strand at 368.346 kb on + strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.347 kb on - strand at 368.363 kb on + strand at 368.363 kb on + strand at 368.372 kb on + strand at 368.381 kb on + strand at 368.393 kb on + strand at 368.393 kb on + strand at 368.466 kb on + strand at 368.466 kb on + strand at 368.467 kb on - strand at 368.467 kb on - strand at 368.483 kb on + strand, within DZA65_RS01695 at 368.541 kb on + strand, within DZA65_RS01695 at 368.541 kb on + strand, within DZA65_RS01695 at 368.541 kb on + strand, within DZA65_RS01695 at 368.541 kb on + strand, within DZA65_RS01695 at 368.541 kb on + strand, within DZA65_RS01695 at 368.541 kb on + strand, within DZA65_RS01695 at 368.542 kb on - strand, within DZA65_RS01695 at 368.542 kb on - strand, within DZA65_RS01695 at 368.542 kb on - strand, within DZA65_RS01695 at 368.542 kb on - strand, within DZA65_RS01695 at 368.544 kb on - strand, within DZA65_RS01695 at 368.573 kb on + strand, within DZA65_RS01695 at 368.573 kb on + strand, within DZA65_RS01695 at 368.574 kb on - strand, within DZA65_RS01695 at 368.661 kb on - strand, within DZA65_RS01695 at 368.697 kb on + strand, within DZA65_RS01695 at 368.697 kb on + strand, within DZA65_RS01695 at 368.698 kb on - strand, within DZA65_RS01695 at 368.789 kb on + strand, within DZA65_RS01695 at 368.789 kb on + strand, within DZA65_RS01695 at 368.789 kb on + strand, within DZA65_RS01695 at 368.789 kb on + strand, within DZA65_RS01695 at 368.789 kb on + strand, within DZA65_RS01695 at 368.790 kb on - strand, within DZA65_RS01695 at 368.790 kb on - strand, within DZA65_RS01695 at 368.790 kb on - strand, within DZA65_RS01695 at 368.790 kb on - strand, within DZA65_RS01695 at 368.790 kb on - strand, within DZA65_RS01695 at 368.790 kb on - strand, within DZA65_RS01695 at 368.790 kb on - strand, within DZA65_RS01695
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 366,186 + DZA65_RS01680 0.67 -0.2 366,186 + DZA65_RS01680 0.67 -1.7 366,187 - DZA65_RS01680 0.67 -0.8 366,187 - DZA65_RS01680 0.67 -0.2 366,206 + DZA65_RS01680 0.68 -1.3 366,207 - DZA65_RS01680 0.68 +0.2 366,263 + DZA65_RS01680 0.71 -1.8 366,263 + DZA65_RS01680 0.71 -1.6 366,264 - DZA65_RS01680 0.71 -1.1 366,264 - DZA65_RS01680 0.71 -2.2 366,318 + DZA65_RS01680 0.73 -1.0 366,388 + DZA65_RS01680 0.77 +0.4 366,388 + DZA65_RS01680 0.77 -0.2 366,388 + DZA65_RS01680 0.77 -1.5 366,389 - DZA65_RS01680 0.77 -0.5 366,445 + DZA65_RS01680 0.79 +0.2 366,445 + DZA65_RS01680 0.79 +1.2 366,445 + DZA65_RS01680 0.79 -0.3 366,448 + DZA65_RS01680 0.80 +0.2 366,660 + DZA65_RS01680 0.90 -0.1 366,660 + DZA65_RS01680 0.90 -1.2 366,660 + DZA65_RS01680 0.90 -0.9 366,660 + DZA65_RS01680 0.90 -0.5 366,660 + DZA65_RS01680 0.90 -0.6 366,660 + DZA65_RS01680 0.90 +0.0 366,661 - +0.2 366,661 - -0.1 366,661 - +1.2 366,661 - -1.6 366,679 + -1.1 366,680 + -0.5 366,680 + +1.2 366,680 + -1.9 366,681 - +2.2 366,712 + -0.3 366,712 + -0.8 366,713 - +1.2 366,713 - -1.1 366,713 - -1.2 366,716 - +0.2 366,744 + +0.4 366,744 + -2.0 366,744 + -0.3 366,745 - -0.9 366,745 - -0.7 366,745 - +0.7 366,866 + -1.5 366,866 + -1.0 366,866 + +0.2 366,866 + -2.2 366,866 + +1.2 366,867 - -0.3 366,867 - +0.0 366,867 - +0.1 366,867 - -1.1 366,867 - -0.9 366,867 - +0.0 366,871 + -0.3 366,872 - +0.9 366,872 - -0.0 366,887 - +0.7 366,899 + +0.1 366,900 - -0.1 366,902 + +1.2 366,902 + -0.3 366,902 + +0.5 366,903 - -0.3 366,968 + -1.0 366,968 + -0.5 366,968 + +0.7 366,968 + -0.3 366,968 + -0.1 366,968 + +1.2 366,968 + -0.1 366,968 + -0.5 366,968 + -0.5 366,968 + -0.1 366,969 - -0.2 366,969 - -0.3 366,969 - -1.9 366,969 - +1.6 366,969 - +0.2 366,969 - -1.8 366,969 - -1.8 366,969 - +0.4 366,969 - +0.5 366,969 - -0.8 366,969 - -1.6 366,969 - +1.7 366,969 - -1.1 366,969 - -0.9 366,969 - +0.1 366,969 - -0.6 367,045 + DZA65_RS01685 0.14 +0.5 367,077 + DZA65_RS01685 0.17 +0.4 367,084 - DZA65_RS01685 0.18 +0.7 367,084 - DZA65_RS01685 0.18 -0.8 367,099 + DZA65_RS01685 0.20 +0.2 367,099 + DZA65_RS01685 0.20 -0.6 367,346 + DZA65_RS01685 0.48 +0.5 367,346 + DZA65_RS01685 0.48 -0.3 367,347 - DZA65_RS01685 0.48 +0.6 367,381 + DZA65_RS01685 0.52 -0.3 367,381 + DZA65_RS01685 0.52 -1.6 367,388 - DZA65_RS01685 0.53 +0.0 367,456 + DZA65_RS01685 0.61 +0.6 367,496 + DZA65_RS01685 0.66 +0.4 367,496 + DZA65_RS01685 0.66 +0.4 367,496 + DZA65_RS01685 0.66 +0.6 367,497 - DZA65_RS01685 0.66 +0.2 367,497 - DZA65_RS01685 0.66 +2.0 367,542 - DZA65_RS01685 0.71 +0.0 367,618 - DZA65_RS01685 0.80 +0.1 367,618 - DZA65_RS01685 0.80 +0.2 367,669 + DZA65_RS01685 0.85 +0.7 367,669 + DZA65_RS01685 0.85 +0.1 367,669 + DZA65_RS01685 0.85 +0.2 367,670 - DZA65_RS01685 0.86 -0.3 367,670 - DZA65_RS01685 0.86 +0.1 367,670 - DZA65_RS01685 0.86 -0.1 367,670 - DZA65_RS01685 0.86 -0.5 367,670 - DZA65_RS01685 0.86 +0.2 367,670 - DZA65_RS01685 0.86 +0.6 367,670 - DZA65_RS01685 0.86 +0.2 367,670 - DZA65_RS01685 0.86 -2.3 367,794 - -0.7 367,794 - -1.6 368,252 - +0.2 368,321 + -0.5 368,335 + -0.9 368,335 + -1.0 368,336 - -1.1 368,336 - -0.5 368,336 - +0.9 368,341 + -0.2 368,341 + -0.8 368,342 - +0.4 368,342 - -0.7 368,346 + -0.7 368,346 + +0.0 368,347 - -1.3 368,347 - -0.5 368,347 - -2.1 368,347 - -0.6 368,347 - -1.1 368,347 - +0.5 368,347 - +0.3 368,347 - +0.7 368,347 - +1.2 368,347 - +0.6 368,363 + -0.8 368,363 + -0.3 368,372 + +0.8 368,381 + -1.4 368,393 + -1.1 368,393 + +0.6 368,466 + -0.3 368,466 + -0.1 368,467 - -0.9 368,467 - +0.7 368,483 + DZA65_RS01695 0.11 +0.7 368,541 + DZA65_RS01695 0.19 -1.0 368,541 + DZA65_RS01695 0.19 +0.9 368,541 + DZA65_RS01695 0.19 -0.6 368,541 + DZA65_RS01695 0.19 -0.3 368,541 + DZA65_RS01695 0.19 -0.8 368,541 + DZA65_RS01695 0.19 -0.4 368,542 - DZA65_RS01695 0.19 +1.2 368,542 - DZA65_RS01695 0.19 -0.3 368,542 - DZA65_RS01695 0.19 +0.3 368,542 - DZA65_RS01695 0.19 -0.9 368,544 - DZA65_RS01695 0.19 -0.0 368,573 + DZA65_RS01695 0.23 -0.1 368,573 + DZA65_RS01695 0.23 -0.8 368,574 - DZA65_RS01695 0.23 +0.7 368,661 - DZA65_RS01695 0.34 -0.4 368,697 + DZA65_RS01695 0.38 -0.4 368,697 + DZA65_RS01695 0.38 +0.4 368,698 - DZA65_RS01695 0.39 -0.1 368,789 + DZA65_RS01695 0.50 -0.6 368,789 + DZA65_RS01695 0.50 +0.2 368,789 + DZA65_RS01695 0.50 -1.2 368,789 + DZA65_RS01695 0.50 -1.3 368,789 + DZA65_RS01695 0.50 +0.2 368,790 - DZA65_RS01695 0.50 -0.2 368,790 - DZA65_RS01695 0.50 -0.3 368,790 - DZA65_RS01695 0.50 +0.2 368,790 - DZA65_RS01695 0.50 -1.1 368,790 - DZA65_RS01695 0.50 +0.2 368,790 - DZA65_RS01695 0.50 -0.2 368,790 - DZA65_RS01695 0.50 -0.2
Or see this region's nucleotide sequence