Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22920

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,751,443	-				+0.8
2,751,551	+				+0.3
2,751,552	-				+0.2
2,751,552	-				-1.1
2,751,552	-				-1.6
2,751,601	+				-2.6
2,751,605	+				-0.0
2,751,605	+				+0.7
2,751,682	+				-0.0
2,751,683	-				-1.1
2,751,707	+				-1.5
2,751,707	+				+0.1
2,751,707	+				+0.3
2,751,708	-				+0.1
2,751,708	-				+0.2
2,751,708	-				-0.4
2,751,708	-				-0.0
2,751,709	+				+1.8
2,751,710	-				+1.0
2,751,710	-				-0.1
2,751,760	+				+1.2
2,751,763	+				-0.8
2,751,832	+				+0.6
2,751,856	-				+0.3
2,751,923	+				-0.8
2,751,923	+				-0.4
2,751,923	+				+1.0
2,751,952	-				-0.0
2,752,316	+				+0.0
2,752,316	+				+0.3
2,752,316	+				-1.9
2,752,317	-				-1.5
2,752,317	-				-0.4
2,752,395	+				-0.1
2,752,395	+				-0.4
2,752,395	+				-0.6
2,752,396	-				-0.6
2,752,470	+				+0.3
2,752,485	+				+0.8
2,752,486	-				+0.5
2,752,516	-				-0.1
2,752,516	-				+0.8
2,752,548	+				-0.7
2,752,548	+				-0.8
2,752,549	-				-0.8
2,752,549	-				-0.0
2,752,549	-				-0.7
2,752,626	+		DZA65_RS22920	0.13	-0.3
2,752,626	+		DZA65_RS22920	0.13	-0.8
2,752,626	+		DZA65_RS22920	0.13	-0.0
2,752,627	-		DZA65_RS22920	0.13	-0.4
2,752,627	-		DZA65_RS22920	0.13	+0.1
2,752,632	+		DZA65_RS22920	0.14	+0.2
2,752,632	+		DZA65_RS22920	0.14	+0.0
2,752,633	-		DZA65_RS22920	0.14	+0.0
2,752,659	+		DZA65_RS22920	0.16	-1.0
2,752,660	-		DZA65_RS22920	0.16	+0.8
2,752,669	-		DZA65_RS22920	0.16	-1.8
2,752,669	-		DZA65_RS22920	0.16	-1.0
2,752,669	-		DZA65_RS22920	0.16	-0.2
2,752,702	-		DZA65_RS22920	0.19	-1.4
2,752,702	-		DZA65_RS22920	0.19	-0.2
2,752,703	+		DZA65_RS22920	0.19	+0.4
2,752,703	+		DZA65_RS22920	0.19	-0.2
2,752,704	-		DZA65_RS22920	0.19	+0.1
2,752,709	-		DZA65_RS22920	0.19	-1.0
2,752,728	-				+0.4
2,752,813	-		DZA65_RS22920	0.26	-2.0
2,752,820	+		DZA65_RS22920	0.27	+0.1
2,752,820	+		DZA65_RS22920	0.27	+0.8
2,752,821	-		DZA65_RS22920	0.27	+1.1
2,752,827	+		DZA65_RS22920	0.27	-1.5
2,752,849	+		DZA65_RS22920	0.29	-0.9
2,752,850	-		DZA65_RS22920	0.29	-0.2
2,752,889	+		DZA65_RS22920	0.31	-0.6
2,752,889	+		DZA65_RS22920	0.31	-1.8
2,752,889	+		DZA65_RS22920	0.31	-0.7
2,752,889	+		DZA65_RS22920	0.31	-1.0
2,752,890	-		DZA65_RS22920	0.31	-0.2
2,752,890	-		DZA65_RS22920	0.31	+0.1
2,752,890	-		DZA65_RS22920	0.31	+0.6
2,752,899	+		DZA65_RS22920	0.32	-0.2
2,752,935	+		DZA65_RS22920	0.35	-0.1
2,752,935	+		DZA65_RS22920	0.35	+0.8
2,752,936	-		DZA65_RS22920	0.35	-3.0
2,752,957	+		DZA65_RS22920	0.36	-0.0
2,752,957	+		DZA65_RS22920	0.36	+0.9
2,752,958	-		DZA65_RS22920	0.36	-1.8
2,752,958	-		DZA65_RS22920	0.36	-0.8
2,752,958	-		DZA65_RS22920	0.36	+0.8
2,753,002	+		DZA65_RS22920	0.39	-1.2
2,753,003	-		DZA65_RS22920	0.39	-0.2
2,753,018	-		DZA65_RS22920	0.40	+1.1
2,753,076	+		DZA65_RS22920	0.44	-0.5
2,753,077	-		DZA65_RS22920	0.44	-0.2
2,753,077	-		DZA65_RS22920	0.44	+0.3
2,753,158	-		DZA65_RS22920	0.50	-0.1
2,753,178	-		DZA65_RS22920	0.51	-1.8
2,753,288	+		DZA65_RS22920	0.59	+1.6
2,753,324	+		DZA65_RS22920	0.61	-1.2
2,753,324	+		DZA65_RS22920	0.61	-1.2
2,753,325	-		DZA65_RS22920	0.61	+0.8
2,753,328	+		DZA65_RS22920	0.62	-0.5
2,753,328	+		DZA65_RS22920	0.62	-1.7
2,753,328	+		DZA65_RS22920	0.62	-0.2
2,753,329	-		DZA65_RS22920	0.62	-0.4
2,753,329	-		DZA65_RS22920	0.62	+0.8
2,753,371	+		DZA65_RS22920	0.65	-1.2
2,753,371	+		DZA65_RS22920	0.65	-1.1
2,753,382	-		DZA65_RS22920	0.65	+0.0
2,753,417	+		DZA65_RS22920	0.68	-0.0
2,753,421	+		DZA65_RS22920	0.68	-0.7
2,753,421	+		DZA65_RS22920	0.68	+0.0
2,753,421	+		DZA65_RS22920	0.68	-0.1
2,753,422	-		DZA65_RS22920	0.68	-0.4
2,753,422	-		DZA65_RS22920	0.68	+0.3
2,753,423	+		DZA65_RS22920	0.68	-0.3
2,753,423	+		DZA65_RS22920	0.68	-0.6
2,753,424	-		DZA65_RS22920	0.68	+0.8
2,753,424	-		DZA65_RS22920	0.68	-0.1
2,753,424	-		DZA65_RS22920	0.68	-0.3
2,753,424	-		DZA65_RS22920	0.68	-1.2
2,753,465	+		DZA65_RS22920	0.71	-1.8
2,753,465	+		DZA65_RS22920	0.71	-0.5
2,753,466	-		DZA65_RS22920	0.71	-0.2
2,753,466	-		DZA65_RS22920	0.71	-0.4
2,753,468	+		DZA65_RS22920	0.71	-1.2
2,753,468	+		DZA65_RS22920	0.71	-0.2
2,753,468	+		DZA65_RS22920	0.71	-1.8
2,753,488	-				-0.8
2,753,490	+		DZA65_RS22920	0.73	-0.2
2,753,490	+		DZA65_RS22920	0.73	-1.0
2,753,491	-		DZA65_RS22920	0.73	-1.0
2,753,491	-		DZA65_RS22920	0.73	+0.1
2,753,592	-		DZA65_RS22920	0.80	-0.6
2,753,594	+		DZA65_RS22920	0.80	+0.2
2,753,601	+		DZA65_RS22920	0.80	+0.5
2,753,604	-		DZA65_RS22920	0.81	-0.2
2,753,604	-		DZA65_RS22920	0.81	+0.3
2,753,712	-		DZA65_RS22920	0.88	-0.6
2,753,789	+				+0.2
2,753,790	-				+0.0
2,753,852	+				+0.9
2,753,853	-				-1.3
2,753,855	+				-0.4
2,753,855	+				-0.3
2,753,875	-				-0.9
2,753,877	+				-0.2
2,753,877	+				+0.3
2,753,883	-				-0.8
2,753,883	-				-0.4
2,753,885	-				+0.1
2,753,885	-				-0.0
2,753,944	+				-0.2
2,753,945	-				-1.0
2,753,976	+				-0.8
2,753,977	-				-0.2
2,753,977	-				+0.2
2,753,982	+				+0.4
2,753,982	+				-1.3
2,753,983	-				-0.5
2,753,983	-				-0.2
2,753,983	-				-0.1
2,754,076	+				+0.1
2,754,077	-				-0.6
2,754,077	-				+0.4
2,754,138	+		DZA65_RS12850	0.10	-1.0
2,754,138	+		DZA65_RS12850	0.10	+0.0
2,754,139	-		DZA65_RS12850	0.11	+0.3
2,754,139	-		DZA65_RS12850	0.11	+0.1
2,754,141	+		DZA65_RS12850	0.11	-0.1
2,754,146	+		DZA65_RS12850	0.11	-1.6
2,754,146	+		DZA65_RS12850	0.11	-0.0
2,754,146	+		DZA65_RS12850	0.11	+0.8
2,754,146	+		DZA65_RS12850	0.11	-0.2
2,754,146	+		DZA65_RS12850	0.11	-1.4
2,754,146	+		DZA65_RS12850	0.11	-0.0
2,754,147	-		DZA65_RS12850	0.11	+1.8
2,754,147	-		DZA65_RS12850	0.11	-0.8
2,754,147	-		DZA65_RS12850	0.11	-0.5
2,754,147	-		DZA65_RS12850	0.11	-0.8
2,754,147	-		DZA65_RS12850	0.11	+0.8
2,754,147	-		DZA65_RS12850	0.11	-0.4
2,754,147	-		DZA65_RS12850	0.11	+0.8
2,754,147	-		DZA65_RS12850	0.11	-0.8
2,754,147	-		DZA65_RS12850	0.11	-0.7
2,754,147	-		DZA65_RS12850	0.11	+0.3
2,754,196	+		DZA65_RS12850	0.17	+0.4
2,754,196	+		DZA65_RS12850	0.17	+0.8
2,754,196	+		DZA65_RS12850	0.17	-1.7
2,754,196	+		DZA65_RS12850	0.17	+0.2
2,754,196	+		DZA65_RS12850	0.17	-0.9
2,754,196	+		DZA65_RS12850	0.17	-0.5
2,754,196	+		DZA65_RS12850	0.17	-0.5
2,754,196	+		DZA65_RS12850	0.17	-1.6
2,754,196	+		DZA65_RS12850	0.17	-0.2
2,754,196	+		DZA65_RS12850	0.17	+0.3
2,754,196	+		DZA65_RS12850	0.17	+0.4
2,754,196	+		DZA65_RS12850	0.17	-0.5
2,754,196	+		DZA65_RS12850	0.17	-1.3
2,754,197	-		DZA65_RS12850	0.17	-0.7
2,754,197	-		DZA65_RS12850	0.17	-0.1
2,754,197	-		DZA65_RS12850	0.17	-1.2
2,754,197	-		DZA65_RS12850	0.17	+0.2
2,754,197	-		DZA65_RS12850	0.17	+0.5
2,754,197	-		DZA65_RS12850	0.17	-0.8
2,754,197	-		DZA65_RS12850	0.17	+0.2
2,754,197	-		DZA65_RS12850	0.17	-0.8
2,754,197	-		DZA65_RS12850	0.17	-0.2
2,754,197	-		DZA65_RS12850	0.17	-2.4
2,754,197	-		DZA65_RS12850	0.17	+0.2
2,754,197	-		DZA65_RS12850	0.17	+0.2
2,754,197	-		DZA65_RS12850	0.17	+0.3
2,754,198	+		DZA65_RS12850	0.17	-0.5
2,754,198	+		DZA65_RS12850	0.17	-1.0
2,754,198	+		DZA65_RS12850	0.17	+0.2
2,754,198	+		DZA65_RS12850	0.17	-0.1
2,754,199	-		DZA65_RS12850	0.17	-2.2
2,754,199	-		DZA65_RS12850	0.17	+0.8
2,754,199	-		DZA65_RS12850	0.17	+0.3
2,754,199	-		DZA65_RS12850	0.17	-0.3
2,754,199	-		DZA65_RS12850	0.17	-0.5
2,754,199	-		DZA65_RS12850	0.17	-0.6
2,754,199	-		DZA65_RS12850	0.17	-0.3
2,754,314	-		DZA65_RS12850	0.29	-0.8
2,754,337	+		DZA65_RS12850	0.32	-0.5
2,754,338	-		DZA65_RS12850	0.32	-1.1
2,754,338	-		DZA65_RS12850	0.32	-0.4
2,754,357	+		DZA65_RS12850	0.34	+0.2
2,754,357	+		DZA65_RS12850	0.34	+0.4
2,754,358	-		DZA65_RS12850	0.34	-0.8
2,754,358	-		DZA65_RS12850	0.34	+0.8
2,754,361	+		DZA65_RS12850	0.34	-0.7
2,754,361	+		DZA65_RS12850	0.34	-0.8
2,754,362	-		DZA65_RS12850	0.34	+2.0
2,754,362	-		DZA65_RS12850	0.34	+0.1
2,754,393	+		DZA65_RS12850	0.37	-0.5
2,754,393	+		DZA65_RS12850	0.37	+0.4
2,754,394	-		DZA65_RS12850	0.38	+0.4
2,754,394	-		DZA65_RS12850	0.38	-0.8
2,754,394	-		DZA65_RS12850	0.38	-0.1
2,754,394	-		DZA65_RS12850	0.38	-2.1
2,754,394	-		DZA65_RS12850	0.38	+0.2
2,754,399	+		DZA65_RS12850	0.38	+0.1
2,754,399	+		DZA65_RS12850	0.38	-0.6
2,754,399	+		DZA65_RS12850	0.38	-0.7
2,754,399	+		DZA65_RS12850	0.38	-1.8
2,754,399	+		DZA65_RS12850	0.38	+0.1
2,754,400	-		DZA65_RS12850	0.38	-1.0
2,754,400	-		DZA65_RS12850	0.38	+0.3
2,754,400	-		DZA65_RS12850	0.38	+0.5
2,754,522	+		DZA65_RS12850	0.51	-0.6
2,754,522	+		DZA65_RS12850	0.51	-0.8
2,754,523	-		DZA65_RS12850	0.51	+0.5
2,754,523	-		DZA65_RS12850	0.51	+0.1
2,754,523	-		DZA65_RS12850	0.51	-0.3
2,754,529	+		DZA65_RS12850	0.52	+0.5
2,754,607	+		DZA65_RS12850	0.60	+0.6
2,754,607	+		DZA65_RS12850	0.60	-1.2
2,754,669	+		DZA65_RS12850	0.67	+0.1
2,754,669	+		DZA65_RS12850	0.67	-2.7
2,754,669	+		DZA65_RS12850	0.67	-0.5
2,754,670	-		DZA65_RS12850	0.67	+0.4
2,754,670	-		DZA65_RS12850	0.67	-0.3