Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22035

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,763,429	+		DZA65_RS22030	0.16	-0.6
4,763,536	+		DZA65_RS22030	0.28	-0.4
4,763,536	+		DZA65_RS22030	0.28	-0.1
4,763,536	+		DZA65_RS22030	0.28	+1.0
4,763,536	+		DZA65_RS22030	0.28	+0.5
4,763,537	-		DZA65_RS22030	0.28	+0.2
4,763,537	-		DZA65_RS22030	0.28	-1.1
4,763,537	-		DZA65_RS22030	0.28	+0.4
4,763,747	+		DZA65_RS22030	0.52	-0.1
4,763,747	+		DZA65_RS22030	0.52	-0.4
4,763,747	+		DZA65_RS22030	0.52	-0.1
4,763,747	+		DZA65_RS22030	0.52	-0.4
4,763,748	-		DZA65_RS22030	0.52	-1.5
4,763,748	-		DZA65_RS22030	0.52	+1.4
4,763,748	-		DZA65_RS22030	0.52	+0.8
4,763,748	-		DZA65_RS22030	0.52	+1.0
4,763,748	-		DZA65_RS22030	0.52	-2.3
4,763,748	-		DZA65_RS22030	0.52	+1.9
4,763,748	-		DZA65_RS22030	0.52	-0.4
4,763,748	-				-0.2
4,763,748	-		DZA65_RS22030	0.52	-0.5
4,763,749	+		DZA65_RS22030	0.53	-0.8
4,763,749	+		DZA65_RS22030	0.53	-0.4
4,763,749	+		DZA65_RS22030	0.53	+0.3
4,763,749	+		DZA65_RS22030	0.53	-0.5
4,763,749	+		DZA65_RS22030	0.53	+0.4
4,763,750	-		DZA65_RS22030	0.53	+0.1
4,763,750	-		DZA65_RS22030	0.53	+0.6
4,763,750	-		DZA65_RS22030	0.53	-0.9
4,763,750	-		DZA65_RS22030	0.53	-0.0
4,763,807	+		DZA65_RS22030	0.59	+0.4
4,763,807	+		DZA65_RS22030	0.59	-0.7
4,763,807	+		DZA65_RS22030	0.59	-0.7
4,763,807	+		DZA65_RS22030	0.59	-0.6
4,763,807	+		DZA65_RS22030	0.59	-0.1
4,763,807	+		DZA65_RS22030	0.59	+0.7
4,763,808	-		DZA65_RS22030	0.59	-0.1
4,763,808	-		DZA65_RS22030	0.59	+0.1
4,763,808	-		DZA65_RS22030	0.59	-0.6
4,763,808	-		DZA65_RS22030	0.59	-1.7
4,763,808	-		DZA65_RS22030	0.59	-0.8
4,763,850	-		DZA65_RS22030	0.64	+0.1
4,763,965	+		DZA65_RS22030	0.78	+1.1
4,763,966	-		DZA65_RS22030	0.78	-0.7
4,763,978	-		DZA65_RS22030	0.79	-0.6
4,763,978	-		DZA65_RS22030	0.79	-0.1
4,764,056	+		DZA65_RS22030	0.88	-1.2
4,764,056	+		DZA65_RS22030	0.88	-0.3
4,764,056	+		DZA65_RS22030	0.88	-0.4
4,764,056	+		DZA65_RS22030	0.88	-0.0
4,764,056	+		DZA65_RS22030	0.88	-1.0
4,764,057	-		DZA65_RS22030	0.88	-0.7
4,764,057	-		DZA65_RS22030	0.88	-1.2
4,764,057	-		DZA65_RS22030	0.88	-0.4
4,764,057	-		DZA65_RS22030	0.88	-1.8
4,764,057	-		DZA65_RS22030	0.88	+0.4
4,764,057	-		DZA65_RS22030	0.88	+0.5
4,764,057	-		DZA65_RS22030	0.88	-0.6
4,764,057	-		DZA65_RS22030	0.88	+0.8
4,764,065	+		DZA65_RS22030	0.89	+0.4
4,764,106	+				+0.3
4,764,130	+				-1.2
4,764,131	-				-0.1
4,764,131	-				-0.4
4,764,142	+				-0.5
4,764,142	+				+0.2
4,764,142	+				-2.8
4,764,142	+				+0.1
4,764,142	+				-1.2
4,764,142	+				+0.1
4,764,142	+				+0.2
4,764,174	+				+0.4
4,764,174	+				+0.8
4,764,174	+				-0.5
4,764,174	+				-0.9
4,764,174	+				-1.2
4,764,174	+				-2.3
4,764,175	-				-1.2
4,764,175	-				-0.6
4,764,175	-				-0.5
4,764,178	+				-0.2
4,764,178	+				-0.2
4,764,179	-				-1.2
4,764,188	-				-0.8
4,764,322	+		DZA65_RS22035	0.12	+0.8
4,764,323	-		DZA65_RS22035	0.12	-1.1
4,764,323	-		DZA65_RS22035	0.12	-1.1
4,764,373	+		DZA65_RS22035	0.17	+0.5
4,764,373	+		DZA65_RS22035	0.17	-1.0
4,764,374	-		DZA65_RS22035	0.17	+0.5
4,764,382	+		DZA65_RS22035	0.18	-0.3
4,764,382	+		DZA65_RS22035	0.18	-0.6
4,764,382	+		DZA65_RS22035	0.18	-0.1
4,764,383	-		DZA65_RS22035	0.18	-0.4
4,764,383	-		DZA65_RS22035	0.18	-0.5
4,764,383	-		DZA65_RS22035	0.18	-0.6
4,764,499	+		DZA65_RS22035	0.28	-0.3
4,764,499	+		DZA65_RS22035	0.28	-0.6
4,764,499	+		DZA65_RS22035	0.28	-0.5
4,764,499	+		DZA65_RS22035	0.28	-0.7
4,764,499	+		DZA65_RS22035	0.28	-1.4
4,764,499	+		DZA65_RS22035	0.28	-0.1
4,764,499	+				-0.2
4,764,499	+		DZA65_RS22035	0.28	+0.4
4,764,499	+		DZA65_RS22035	0.28	-0.5
4,764,499	+		DZA65_RS22035	0.28	-1.2
4,764,499	+		DZA65_RS22035	0.28	+1.0
4,764,500	-		DZA65_RS22035	0.28	+0.5
4,764,500	-		DZA65_RS22035	0.28	-0.2
4,764,500	-		DZA65_RS22035	0.28	-0.6
4,764,500	-		DZA65_RS22035	0.28	+1.6
4,764,500	-		DZA65_RS22035	0.28	+1.4
4,764,500	-		DZA65_RS22035	0.28	+0.4
4,764,500	-		DZA65_RS22035	0.28	-0.2
4,764,500	-		DZA65_RS22035	0.28	+0.0
4,764,575	+		DZA65_RS22035	0.35	+0.4
4,764,575	+		DZA65_RS22035	0.35	-1.4
4,764,575	+		DZA65_RS22035	0.35	+0.9
4,764,575	+		DZA65_RS22035	0.35	+0.5
4,764,576	-		DZA65_RS22035	0.35	-0.2
4,764,591	-		DZA65_RS22035	0.37	-0.3
4,764,608	+		DZA65_RS22035	0.38	+0.8
4,764,609	-		DZA65_RS22035	0.38	+0.1
4,764,609	-		DZA65_RS22035	0.38	-1.5
4,764,609	-		DZA65_RS22035	0.38	+0.4
4,764,609	-		DZA65_RS22035	0.38	+0.4
4,764,625	+		DZA65_RS22035	0.40	+0.4
4,764,625	+		DZA65_RS22035	0.40	-0.6
4,764,626	-		DZA65_RS22035	0.40	+0.8
4,764,671	+		DZA65_RS22035	0.44	+0.4
4,764,677	+		DZA65_RS22035	0.44	-0.2
4,764,677	+		DZA65_RS22035	0.44	+0.4
4,764,677	+		DZA65_RS22035	0.44	-0.9
4,764,677	+		DZA65_RS22035	0.44	+0.1
4,764,677	+		DZA65_RS22035	0.44	+0.3
4,764,677	+		DZA65_RS22035	0.44	-1.2
4,764,678	-		DZA65_RS22035	0.45	+0.6
4,764,678	-		DZA65_RS22035	0.45	-0.3
4,764,678	-		DZA65_RS22035	0.45	-1.6
4,764,678	-		DZA65_RS22035	0.45	+0.5
4,764,678	-		DZA65_RS22035	0.45	-0.4
4,764,678	-		DZA65_RS22035	0.45	-0.2
4,764,678	-		DZA65_RS22035	0.45	-1.6
4,764,983	+		DZA65_RS22035	0.72	+0.4
4,765,012	+		DZA65_RS22035	0.75	-0.5
4,765,012	+		DZA65_RS22035	0.75	-1.3
4,765,012	+		DZA65_RS22035	0.75	-0.0
4,765,013	-		DZA65_RS22035	0.75	+1.9
4,765,013	-		DZA65_RS22035	0.75	+0.4
4,765,030	+		DZA65_RS22035	0.76	-0.1
4,765,030	+		DZA65_RS22035	0.76	+0.9
4,765,040	-		DZA65_RS22035	0.77	-0.5
4,765,112	+		DZA65_RS22035	0.84	-0.8
4,765,112	+		DZA65_RS22035	0.84	+0.4
4,765,112	+		DZA65_RS22035	0.84	-0.3
4,765,112	+		DZA65_RS22035	0.84	-0.8
4,765,112	+		DZA65_RS22035	0.84	+2.4
4,765,112	+		DZA65_RS22035	0.84	-0.4
4,765,112	+		DZA65_RS22035	0.84	+0.1
4,765,113	-		DZA65_RS22035	0.84	+1.2
4,765,113	-		DZA65_RS22035	0.84	-1.1
4,765,132	+		DZA65_RS22035	0.86	-1.4
4,765,132	+		DZA65_RS22035	0.86	-1.9
4,765,132	+		DZA65_RS22035	0.86	+0.8
4,765,132	+		DZA65_RS22035	0.86	+1.1
4,765,132	+		DZA65_RS22035	0.86	-0.2
4,765,132	+		DZA65_RS22035	0.86	+0.5
4,765,132	+		DZA65_RS22035	0.86	-0.4
4,765,132	+		DZA65_RS22035	0.86	+0.0
4,765,132	+		DZA65_RS22035	0.86	-1.0
4,765,133	-		DZA65_RS22035	0.86	-1.2
4,765,133	-		DZA65_RS22035	0.86	+4.4
4,765,133	-		DZA65_RS22035	0.86	-0.2
4,765,133	-		DZA65_RS22035	0.86	-0.7
4,765,133	-		DZA65_RS22035	0.86	+0.1
4,765,133	-		DZA65_RS22035	0.86	-0.2
4,765,133	-		DZA65_RS22035	0.86	+1.1
4,765,133	-		DZA65_RS22035	0.86	-0.2
4,765,133	-		DZA65_RS22035	0.86	-0.1
4,765,133	-		DZA65_RS22035	0.86	+0.4
4,765,133	-		DZA65_RS22035	0.86	+0.3
4,765,133	-		DZA65_RS22035	0.86	+1.0
4,765,160	+		DZA65_RS22035	0.88	-0.9
4,765,161	-		DZA65_RS22035	0.88	+1.7
4,765,263	+				-0.6
4,765,303	-				-1.1
4,765,303	-				-0.4
4,765,303	-				+0.1
4,765,331	+				-0.2
4,765,331	+				+0.6
4,765,331	+				+0.4
4,765,331	+				-0.0
4,765,331	+				-0.6
4,765,332	-				-2.6
4,765,332	-				+0.9
4,765,332	-				+0.4
4,765,332	-				+1.4
4,765,332	-				-0.2
4,765,332	-				-0.3
4,765,332	-				+0.6
4,765,332	-				+2.1
4,765,332	-				-0.2
4,765,332	-				+0.4
4,765,349	+				+1.4
4,765,349	+				+0.2
4,765,349	+				-0.2
4,765,349	+				-1.2
4,765,349	+				+0.8
4,765,350	-				+1.7
4,765,350	-				-0.2
4,765,350	-				-0.4
4,765,350	-				-1.8
4,765,371	+				+1.1
4,765,372	-				-0.7
4,765,372	-				+0.6
4,765,373	+				-0.0
4,765,373	+				+0.6
4,765,373	+				-0.7
4,765,373	+				-1.4
4,765,373	+				+1.0
4,765,373	+				+0.2
4,765,373	+				-0.3
4,765,373	+				+1.0
4,765,373	+				-1.2
4,765,373	+				-0.2
4,765,373	+				+0.0
4,765,373	+				-0.9
4,765,373	+				+0.1
4,765,373	+				+1.2
4,765,373	+				+0.9
4,765,373	+				+0.9
4,765,373	+				+0.4
4,765,373	+				+1.4
4,765,373	+				-1.4
4,765,373	+				+0.8
4,765,373	+				+1.0
4,765,373	+				-0.0
4,765,373	+				-1.0
4,765,374	-				+0.5
4,765,374	-				+0.5
4,765,374	-				+0.7
4,765,374	-				-1.6
4,765,374	-				-1.1
4,765,374	-				+2.4
4,765,374	-				+0.7
4,765,374	-				-0.6
4,765,374	-				-0.1
4,765,374	-				-0.4
4,765,374	-				-0.6
4,765,374	-				-0.7
4,765,374	-				+0.8
4,765,374	-				+0.2
4,765,374	-				-0.2
4,765,374	-				+0.2
4,765,443	-		DZA65_RS22040	0.14	-0.5
4,765,443	-		DZA65_RS22040	0.14	+0.2
4,765,496	+		DZA65_RS22040	0.19	-0.1
4,765,497	-		DZA65_RS22040	0.19	+1.1
4,765,497	-		DZA65_RS22040	0.19	+0.8
4,765,539	+		DZA65_RS22040	0.23	-1.1
4,765,686	+		DZA65_RS22040	0.37	-0.3
4,765,686	+		DZA65_RS22040	0.37	-1.4
4,765,686	+		DZA65_RS22040	0.37	+0.3
4,765,686	+		DZA65_RS22040	0.37	+0.9
4,765,686	+		DZA65_RS22040	0.37	+0.6
4,765,686	+		DZA65_RS22040	0.37	+0.3
4,765,686	+		DZA65_RS22040	0.37	+0.5
4,765,686	+		DZA65_RS22040	0.37	-0.7
4,765,686	+		DZA65_RS22040	0.37	-0.1
4,765,686	+		DZA65_RS22040	0.37	-2.3
4,765,687	-		DZA65_RS22040	0.38	-0.4
4,765,687	-		DZA65_RS22040	0.38	+1.7
4,765,687	-		DZA65_RS22040	0.38	+0.6
4,765,687	-		DZA65_RS22040	0.38	+0.1
4,765,687	-		DZA65_RS22040	0.38	+0.9
4,765,687	-		DZA65_RS22040	0.38	-0.5
4,765,736	+		DZA65_RS22040	0.42	-0.7
4,765,737	-		DZA65_RS22040	0.42	+0.6
4,765,747	-		DZA65_RS22040	0.43	-0.6
4,765,848	-		DZA65_RS22040	0.53	+0.4
4,765,911	+		DZA65_RS22040	0.59	-1.1
4,765,912	-		DZA65_RS22040	0.59	+0.7
4,765,912	-		DZA65_RS22040	0.59	-0.2
4,765,951	+		DZA65_RS22040	0.63	+0.5
4,765,951	+		DZA65_RS22040	0.63	+0.3
4,765,952	-		DZA65_RS22040	0.63	+0.6
4,765,952	-		DZA65_RS22040	0.63	+0.3
4,765,952	-		DZA65_RS22040	0.63	-1.8
4,765,952	-		DZA65_RS22040	0.63	-1.4
4,765,991	+		DZA65_RS22040	0.67	-1.6
4,765,991	+		DZA65_RS22040	0.67	+0.4
4,765,992	-		DZA65_RS22040	0.67	+0.7
4,766,123	+		DZA65_RS22040	0.79	+3.0
4,766,165	+		DZA65_RS22040	0.83	+0.2
4,766,166	-		DZA65_RS22040	0.83	+0.0
4,766,216	+		DZA65_RS22040	0.88	-0.8
4,766,216	+		DZA65_RS22040	0.88	+0.5
4,766,216	+		DZA65_RS22040	0.88	-1.9
4,766,216	+		DZA65_RS22040	0.88	-0.7
4,766,216	+		DZA65_RS22040	0.88	-1.9
4,766,216	+		DZA65_RS22040	0.88	-0.9
4,766,217	-		DZA65_RS22040	0.88	+0.2
4,766,217	-		DZA65_RS22040	0.88	-0.2
4,766,217	-				+0.7
4,766,217	-		DZA65_RS22040	0.88	+0.9
4,766,217	-		DZA65_RS22040	0.88	-0.4
4,766,217	-		DZA65_RS22040	0.88	-1.1
4,766,217	-		DZA65_RS22040	0.88	+0.3