Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21565

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,663,309	+		DZA65_RS21560	0.53	-0.0
4,663,309	+		DZA65_RS21560	0.53	+1.0
4,663,309	+		DZA65_RS21560	0.53	-0.8
4,663,318	-				+0.4
4,663,438	-		DZA65_RS21560	0.62	-0.8
4,663,438	-		DZA65_RS21560	0.62	+1.6
4,663,474	+		DZA65_RS21560	0.64	-1.3
4,663,474	+		DZA65_RS21560	0.64	-0.0
4,663,474	+		DZA65_RS21560	0.64	+0.6
4,663,492	-		DZA65_RS21560	0.66	-0.5
4,663,563	+		DZA65_RS21560	0.70	-0.1
4,663,627	-		DZA65_RS21560	0.75	-0.2
4,663,855	+				+0.2
4,663,969	+				-0.3
4,663,969	+				-0.6
4,663,969	+				-0.2
4,663,970	-				-1.4
4,663,970	-				-1.4
4,663,970	-				+0.1
4,663,970	-				-0.2
4,663,970	-				-0.6
4,663,970	-				-0.2
4,663,999	+				-0.2
4,663,999	+				+0.6
4,664,000	-				+0.8
4,664,000	-				+0.3
4,664,000	-				+0.9
4,664,000	-				+0.1
4,664,037	+				-0.4
4,664,038	-				-0.3
4,664,040	+				+0.9
4,664,041	-				-0.5
4,664,041	-				+0.6
4,664,071	-				-1.4
4,664,078	-				-0.9
4,664,097	+				+0.4
4,664,097	+				-2.0
4,664,125	+				+0.1
4,664,126	-				-1.0
4,664,128	+				-1.0
4,664,128	+				-0.6
4,664,128	+				-0.8
4,664,128	+				-2.5
4,664,129	-				+0.8
4,664,138	-				-1.2
4,664,180	+				-1.6
4,664,180	+				-1.4
4,664,187	+				-0.8
4,664,187	+				-1.2
4,664,188	-				-1.2
4,664,188	-				-0.9
4,664,188	-				-0.5
4,664,253	+		DZA65_RS21565	0.14	-2.0
4,664,254	-		DZA65_RS21565	0.14	-2.4
4,664,269	+		DZA65_RS21565	0.16	-2.6
4,664,269	+		DZA65_RS21565	0.16	-2.6
4,664,290	-		DZA65_RS21565	0.18	-1.7
4,664,318	-		DZA65_RS21565	0.20	-2.5
4,664,370	+		DZA65_RS21565	0.25	-1.4
4,664,370	+		DZA65_RS21565	0.25	-1.8
4,664,370	+		DZA65_RS21565	0.25	+0.1
4,664,370	+		DZA65_RS21565	0.25	-1.7
4,664,371	-		DZA65_RS21565	0.25	-0.5
4,664,371	-		DZA65_RS21565	0.25	-1.6
4,664,371	-		DZA65_RS21565	0.25	-1.0
4,664,371	-		DZA65_RS21565	0.25	-2.2
4,664,448	+		DZA65_RS21565	0.32	-0.9
4,664,448	+		DZA65_RS21565	0.32	-2.2
4,664,449	-		DZA65_RS21565	0.32	-1.4
4,664,470	-		DZA65_RS21565	0.34	-0.7
4,664,567	-		DZA65_RS21565	0.43	-0.2
4,664,568	+		DZA65_RS21565	0.43	-0.6
4,664,568	+		DZA65_RS21565	0.43	-1.9
4,664,568	+		DZA65_RS21565	0.43	-1.5
4,664,568	+		DZA65_RS21565	0.43	-0.9
4,664,568	+		DZA65_RS21565	0.43	-1.6
4,664,568	+		DZA65_RS21565	0.43	-0.6
4,664,568	+		DZA65_RS21565	0.43	-1.5
4,664,569	-		DZA65_RS21565	0.43	-0.7
4,664,569	-		DZA65_RS21565	0.43	-1.7
4,664,569	-		DZA65_RS21565	0.43	-1.2
4,664,569	-		DZA65_RS21565	0.43	-1.0
4,664,569	-		DZA65_RS21565	0.43	-0.8
4,664,569	-		DZA65_RS21565	0.43	-1.8
4,664,569	-		DZA65_RS21565	0.43	-0.2
4,664,569	-		DZA65_RS21565	0.43	-1.2
4,664,569	-		DZA65_RS21565	0.43	-2.3
4,664,569	-		DZA65_RS21565	0.43	-1.2
4,664,569	-		DZA65_RS21565	0.43	-0.4
4,664,569	-		DZA65_RS21565	0.43	-1.4
4,664,590	+		DZA65_RS21565	0.45	-2.8
4,664,590	+		DZA65_RS21565	0.45	-1.6
4,664,591	-		DZA65_RS21565	0.45	-0.4
4,664,591	-		DZA65_RS21565	0.45	+0.1
4,664,591	-		DZA65_RS21565	0.45	-1.2
4,664,591	-		DZA65_RS21565	0.45	-1.1
4,664,610	+		DZA65_RS21565	0.47	-1.0
4,664,610	+		DZA65_RS21565	0.47	-1.4
4,664,611	-		DZA65_RS21565	0.47	-0.0
4,664,611	-		DZA65_RS21565	0.47	+1.0
4,664,611	-		DZA65_RS21565	0.47	-1.7
4,664,649	+		DZA65_RS21565	0.50	-0.5
4,664,650	-		DZA65_RS21565	0.50	-2.3
4,664,698	+		DZA65_RS21565	0.55	+0.2
4,664,698	+		DZA65_RS21565	0.55	-0.6
4,664,698	+		DZA65_RS21565	0.55	-2.5
4,664,698	+		DZA65_RS21565	0.55	-0.5
4,664,699	-		DZA65_RS21565	0.55	-2.0
4,664,699	-		DZA65_RS21565	0.55	-1.6
4,664,770	-		DZA65_RS21565	0.61	-0.8
4,664,817	+		DZA65_RS21565	0.66	-1.3
4,664,818	-		DZA65_RS21565	0.66	-1.6
4,665,198	+				-0.9
4,665,198	+				-1.9
4,665,198	+				-1.6
4,665,198	+				-2.1
4,665,198	+				-2.6
4,665,198	+				-1.8
4,665,198	+				-1.8
4,665,198	+				-1.2
4,665,198	+				-1.0
4,665,198	+				-1.6
4,665,198	+				-1.2
4,665,198	+				-1.6
4,665,198	+				-1.6
4,665,198	+				+0.6
4,665,199	-				+0.4
4,665,199	-				+0.4
4,665,199	-				-2.0
4,665,199	-				+0.2
4,665,199	-				-0.8
4,665,237	+				-2.3
4,665,237	+				-0.4
4,665,237	+				-0.9
4,665,237	+				-1.3
4,665,237	+				-1.4
4,665,237	+				-1.3
4,665,237	+				-0.1
4,665,238	-				-0.2
4,665,238	-				-2.0
4,665,238	-				-0.7
4,665,238	-				-0.5
4,665,238	-				+0.2
4,665,238	-				+0.4
4,665,238	-				+0.4
4,665,238	-				+1.1
4,665,238	-				-1.0
4,665,238	-				-1.2
4,665,238	-				-1.8
4,665,238	-				-0.6
4,665,238	-				-3.2
4,665,238	-				-1.1
4,665,390	+		DZA65_RS21570	0.22	-1.4
4,665,390	+		DZA65_RS21570	0.22	-1.1
4,665,390	+		DZA65_RS21570	0.22	-1.6
4,665,390	+		DZA65_RS21570	0.22	-1.2
4,665,391	-		DZA65_RS21570	0.22	-0.2
4,665,391	-		DZA65_RS21570	0.22	-0.3
4,665,417	+		DZA65_RS21570	0.25	-0.8
4,665,417	+		DZA65_RS21570	0.25	-0.0
4,665,417	+		DZA65_RS21570	0.25	-2.0
4,665,417	+		DZA65_RS21570	0.25	-1.3
4,665,417	+		DZA65_RS21570	0.25	-1.2
4,665,418	-		DZA65_RS21570	0.25	-0.2
4,665,418	-		DZA65_RS21570	0.25	+0.4
4,665,418	-		DZA65_RS21570	0.25	-0.2
4,665,418	-		DZA65_RS21570	0.25	-1.1
4,665,418	-		DZA65_RS21570	0.25	+0.6
4,665,418	-		DZA65_RS21570	0.25	-0.2
4,665,418	-		DZA65_RS21570	0.25	+0.8
4,665,418	-		DZA65_RS21570	0.25	-0.8
4,665,418	-		DZA65_RS21570	0.25	-1.2
4,665,418	-		DZA65_RS21570	0.25	+0.3
4,665,418	-		DZA65_RS21570	0.25	+0.7
4,665,418	-		DZA65_RS21570	0.25	+0.5
4,665,439	+		DZA65_RS21570	0.27	-0.0
4,665,708	+		DZA65_RS21570	0.58	-0.6
4,665,709	-		DZA65_RS21570	0.58	-1.0
4,665,741	+		DZA65_RS21570	0.61	-0.6
4,665,789	+		DZA65_RS21570	0.67	-0.9
4,665,789	+		DZA65_RS21570	0.67	-0.7
4,665,789	+		DZA65_RS21570	0.67	-0.4
4,665,789	+		DZA65_RS21570	0.67	-1.4
4,665,789	+		DZA65_RS21570	0.67	+0.5
4,665,789	+		DZA65_RS21570	0.67	-0.4
4,665,789	+		DZA65_RS21570	0.67	-2.0
4,665,789	+		DZA65_RS21570	0.67	+0.8
4,665,789	+		DZA65_RS21570	0.67	-1.2
4,665,789	+		DZA65_RS21570	0.67	-0.3
4,665,789	+		DZA65_RS21570	0.67	-1.7
4,665,790	-		DZA65_RS21570	0.67	-1.1
4,665,790	-		DZA65_RS21570	0.67	-0.6
4,665,790	-		DZA65_RS21570	0.67	-1.6
4,665,790	-		DZA65_RS21570	0.67	-0.2
4,665,790	-		DZA65_RS21570	0.67	+0.8
4,665,790	-		DZA65_RS21570	0.67	-1.5
4,665,790	-		DZA65_RS21570	0.67	-0.7
4,665,790	-		DZA65_RS21570	0.67	-0.1
4,665,792	+		DZA65_RS21570	0.67	+0.0
4,665,792	+		DZA65_RS21570	0.67	-0.0
4,665,793	-		DZA65_RS21570	0.67	-1.3
4,665,793	-		DZA65_RS21570	0.67	+1.0
4,665,793	-		DZA65_RS21570	0.67	-1.3
4,665,793	-		DZA65_RS21570	0.67	-1.6
4,665,871	+		DZA65_RS21570	0.76	-1.2
4,665,871	+		DZA65_RS21570	0.76	-0.7
4,665,872	-		DZA65_RS21570	0.76	-1.6
4,665,907	-		DZA65_RS21570	0.80	-0.2
4,665,936	+		DZA65_RS21570	0.84	-2.3
4,665,936	+		DZA65_RS21570	0.84	-0.5
4,665,936	+		DZA65_RS21570	0.84	-0.8
4,665,937	-		DZA65_RS21570	0.84	+0.0
4,665,937	-		DZA65_RS21570	0.84	-2.0
4,665,967	+		DZA65_RS21570	0.87	+1.0
4,665,967	+		DZA65_RS21570	0.87	-1.0
4,665,968	-		DZA65_RS21570	0.87	-1.0
4,666,022	-				+0.5
4,666,095	+				+0.2
4,666,095	+				-0.7
4,666,096	-				-0.3
4,666,096	-				+2.1
4,666,096	-				-1.4
4,666,104	+				-0.4
4,666,135	+				-1.3
4,666,135	+				-0.7
4,666,135	+				-1.4
4,666,136	-				+0.2
4,666,136	-				-0.3
4,666,136	-				-2.9
4,666,136	-				-0.5
4,666,136	-				-0.2
4,666,139	+				+0.4
4,666,139	+				-1.2
4,666,139	+				-1.3
4,666,139	+				+0.0
4,666,139	+				-0.0
4,666,139	+				+0.0
4,666,139	+				-2.6
4,666,139	+				-1.5
4,666,139	+				+0.5
4,666,140	-				-0.3
4,666,140	-				+0.8
4,666,140	-				-0.5
4,666,140	-				+0.5
4,666,140	-				-0.7
4,666,140	-				+0.1
4,666,141	+				-0.6
4,666,142	-				-0.3
4,666,142	-				-0.1
4,666,142	-				-0.2
4,666,142	-				-0.4