Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21010

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,541,650	+		DZA65_RS21005	0.22	-1.0
4,541,650	+		DZA65_RS21005	0.22	-0.9
4,541,651	-		DZA65_RS21005	0.22	+0.0
4,541,652	+		DZA65_RS21005	0.22	-1.8
4,541,652	+		DZA65_RS21005	0.22	-0.5
4,541,652	+		DZA65_RS21005	0.22	-0.1
4,541,652	+		DZA65_RS21005	0.22	-0.3
4,541,652	+		DZA65_RS21005	0.22	-0.7
4,541,652	+		DZA65_RS21005	0.22	-0.4
4,541,652	+		DZA65_RS21005	0.22	-1.1
4,541,653	-		DZA65_RS21005	0.22	+0.0
4,541,653	-		DZA65_RS21005	0.22	+0.3
4,541,653	-		DZA65_RS21005	0.22	+1.8
4,541,653	-		DZA65_RS21005	0.22	-0.7
4,541,653	-		DZA65_RS21005	0.22	+0.2
4,541,653	-		DZA65_RS21005	0.22	-1.4
4,541,653	-		DZA65_RS21005	0.22	+0.1
4,541,653	-		DZA65_RS21005	0.22	+0.3
4,541,653	-		DZA65_RS21005	0.22	-1.5
4,541,668	+		DZA65_RS21005	0.24	-2.3
4,541,668	+		DZA65_RS21005	0.24	+0.1
4,541,694	+		DZA65_RS21005	0.26	-1.1
4,541,694	+		DZA65_RS21005	0.26	+0.6
4,541,694	+		DZA65_RS21005	0.26	-0.2
4,541,694	+		DZA65_RS21005	0.26	+0.7
4,541,695	-		DZA65_RS21005	0.26	+0.0
4,541,804	+		DZA65_RS21005	0.35	-0.3
4,541,823	+		DZA65_RS21005	0.36	-0.8
4,541,938	+		DZA65_RS21005	0.46	+0.7
4,541,939	-		DZA65_RS21005	0.46	+0.8
4,541,939	-		DZA65_RS21005	0.46	+0.5
4,541,939	-		DZA65_RS21005	0.46	+0.1
4,542,060	+		DZA65_RS21005	0.56	+1.0
4,542,060	+		DZA65_RS21005	0.56	+0.5
4,542,060	+		DZA65_RS21005	0.56	-0.7
4,542,060	+		DZA65_RS21005	0.56	+0.9
4,542,060	+		DZA65_RS21005	0.56	-0.7
4,542,060	+		DZA65_RS21005	0.56	-0.3
4,542,060	+		DZA65_RS21005	0.56	-0.4
4,542,060	+		DZA65_RS21005	0.56	-0.1
4,542,060	+		DZA65_RS21005	0.56	+0.5
4,542,060	+		DZA65_RS21005	0.56	-0.3
4,542,061	-		DZA65_RS21005	0.56	-0.7
4,542,061	-		DZA65_RS21005	0.56	-1.4
4,542,061	-		DZA65_RS21005	0.56	+0.4
4,542,061	-		DZA65_RS21005	0.56	-0.5
4,542,061	-		DZA65_RS21005	0.56	-0.7
4,542,061	-		DZA65_RS21005	0.56	-0.9
4,542,069	+		DZA65_RS21005	0.57	-0.4
4,542,069	+		DZA65_RS21005	0.57	-0.8
4,542,069	+		DZA65_RS21005	0.57	+1.0
4,542,069	+		DZA65_RS21005	0.57	-0.7
4,542,069	+		DZA65_RS21005	0.57	+0.3
4,542,069	+		DZA65_RS21005	0.57	-0.5
4,542,070	-		DZA65_RS21005	0.57	-0.5
4,542,070	-		DZA65_RS21005	0.57	+0.4
4,542,070	-		DZA65_RS21005	0.57	-0.5
4,542,084	+		DZA65_RS21005	0.58	-2.0
4,542,084	+		DZA65_RS21005	0.58	-1.5
4,542,085	-		DZA65_RS21005	0.58	-0.7
4,542,140	-		DZA65_RS21005	0.63	-0.7
4,542,140	-		DZA65_RS21005	0.63	+0.9
4,542,140	-		DZA65_RS21005	0.63	+0.1
4,542,140	-		DZA65_RS21005	0.63	-0.9
4,542,140	-		DZA65_RS21005	0.63	+0.0
4,542,159	+		DZA65_RS21005	0.64	+0.5
4,542,159	+		DZA65_RS21005	0.64	-0.7
4,542,159	+		DZA65_RS21005	0.64	-1.1
4,542,292	+		DZA65_RS21005	0.75	-0.3
4,542,328	+		DZA65_RS21005	0.78	-0.4
4,542,329	-		DZA65_RS21005	0.79	+0.5
4,542,329	-		DZA65_RS21005	0.79	-1.7
4,542,329	-		DZA65_RS21005	0.79	-0.1
4,542,414	+		DZA65_RS21005	0.86	-0.1
4,542,414	+		DZA65_RS21005	0.86	-0.8
4,542,414	+		DZA65_RS21005	0.86	-0.6
4,542,415	-		DZA65_RS21005	0.86	+0.8
4,542,415	-		DZA65_RS21005	0.86	+1.3
4,542,495	+				-0.3
4,542,495	+				+0.1
4,542,495	+				-0.7
4,542,598	+				-0.5
4,542,599	-				-0.4
4,542,599	-				+0.5
4,542,599	-				-0.5
4,542,599	-				+0.7
4,542,599	-				-0.4
4,542,617	+				-0.8
4,542,618	-				+0.0
4,542,671	+				-0.1
4,542,672	-				-1.3
4,542,672	-				-0.6
4,542,672	-				+0.6
4,542,672	-				-1.9
4,542,770	+		DZA65_RS21010	0.15	+0.7
4,542,770	+		DZA65_RS21010	0.15	-1.5
4,542,771	-		DZA65_RS21010	0.15	-0.5
4,542,771	-		DZA65_RS21010	0.15	+1.3
4,542,910	+		DZA65_RS21010	0.26	-0.8
4,542,910	+		DZA65_RS21010	0.26	+0.3
4,542,910	+		DZA65_RS21010	0.26	+0.1
4,542,911	-		DZA65_RS21010	0.26	+0.1
4,542,956	+		DZA65_RS21010	0.30	-0.1
4,542,956	+		DZA65_RS21010	0.30	+0.8
4,542,957	-		DZA65_RS21010	0.30	+0.1
4,542,957	-		DZA65_RS21010	0.30	+1.2
4,542,957	-		DZA65_RS21010	0.30	-0.5
4,542,957	-		DZA65_RS21010	0.30	+0.1
4,543,097	-		DZA65_RS21010	0.41	+1.3
4,543,345	+		DZA65_RS21010	0.61	+0.9
4,543,345	+		DZA65_RS21010	0.61	+1.3
4,543,346	-		DZA65_RS21010	0.61	+0.2
4,543,346	-		DZA65_RS21010	0.61	+0.1
4,543,346	-		DZA65_RS21010	0.61	+0.5
4,543,346	-		DZA65_RS21010	0.61	+0.3
4,543,346	-		DZA65_RS21010	0.61	+0.1
4,543,346	-		DZA65_RS21010	0.61	-0.4
4,543,346	-		DZA65_RS21010	0.61	+1.8
4,543,380	+		DZA65_RS21010	0.64	+0.7
4,543,381	-		DZA65_RS21010	0.64	-1.5
4,543,583	-		DZA65_RS21010	0.80	+0.6
4,543,583	-		DZA65_RS21010	0.80	+0.5
4,543,600	-		DZA65_RS21010	0.81	+0.4
4,543,607	+		DZA65_RS21010	0.82	-0.4
4,543,607	+		DZA65_RS21010	0.82	+1.0
4,543,607	+		DZA65_RS21010	0.82	+0.1
4,543,607	+		DZA65_RS21010	0.82	-1.8
4,543,608	-		DZA65_RS21010	0.82	+0.2
4,543,608	-		DZA65_RS21010	0.82	-0.7
4,543,608	-		DZA65_RS21010	0.82	-1.5
4,543,608	-		DZA65_RS21010	0.82	-0.6
4,543,826	+				+0.2
4,543,827	-				+1.1
4,543,881	+				-1.7
4,543,881	+				+0.1
4,543,881	+				+0.9
4,543,882	-				-1.1
4,543,894	+				+1.3
4,543,895	-				-0.4
4,543,895	-				+0.7
4,543,895	-				+0.1
4,544,112	-		DZA65_RS21015	0.18	+0.6
4,544,357	+		DZA65_RS21015	0.32	+0.1
4,544,357	+		DZA65_RS21015	0.32	-0.1
4,544,357	+		DZA65_RS21015	0.32	-0.7
4,544,357	+		DZA65_RS21015	0.32	+0.5
4,544,358	-		DZA65_RS21015	0.33	-1.7
4,544,391	+		DZA65_RS21015	0.35	+0.1
4,544,391	+		DZA65_RS21015	0.35	+0.2
4,544,392	-		DZA65_RS21015	0.35	-1.4
4,544,501	-		DZA65_RS21015	0.41	-0.9
4,544,532	+		DZA65_RS21015	0.43	+0.4
4,544,532	+		DZA65_RS21015	0.43	-0.3
4,544,640	+		DZA65_RS21015	0.50	+0.9
4,544,641	-		DZA65_RS21015	0.50	+0.2
4,544,641	-		DZA65_RS21015	0.50	+0.3
4,544,797	+		DZA65_RS21015	0.59	-0.5
4,544,797	+		DZA65_RS21015	0.59	-0.8
4,544,798	-		DZA65_RS21015	0.59	+2.6
4,544,808	+		DZA65_RS21015	0.60	+0.5
4,544,809	-		DZA65_RS21015	0.60	-0.8