Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19370

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,187,998	-				-3.9
4,188,010	-				-0.7
4,188,042	-				-1.0
4,188,042	-				-0.1
4,188,043	+				-0.2
4,188,093	-				-0.6
4,188,093	-				+0.6
4,188,096	+				-0.1
4,188,096	+				+0.0
4,188,096	+				-2.1
4,188,096	+				-0.9
4,188,097	-				-1.3
4,188,115	+				-0.7
4,188,115	+				-0.1
4,188,116	-				-1.7
4,188,118	-				+0.2
4,188,118	-				-0.1
4,188,137	-				+0.8
4,188,185	+		DZA65_RS19365	0.15	-0.7
4,188,278	+		DZA65_RS19365	0.35	-0.8
4,188,278	+		DZA65_RS19365	0.35	+0.3
4,188,278	+		DZA65_RS19365	0.35	+0.2
4,188,278	+		DZA65_RS19365	0.35	-0.2
4,188,279	-		DZA65_RS19365	0.35	-0.4
4,188,279	-		DZA65_RS19365	0.35	+0.4
4,188,279	-		DZA65_RS19365	0.35	-0.4
4,188,279	-		DZA65_RS19365	0.35	-0.8
4,188,280	+		DZA65_RS19365	0.35	+0.8
4,188,280	+		DZA65_RS19365	0.35	-1.3
4,188,280	+		DZA65_RS19365	0.35	+0.1
4,188,281	-		DZA65_RS19365	0.35	-0.0
4,188,281	-		DZA65_RS19365	0.35	+0.2
4,188,281	-		DZA65_RS19365	0.35	+0.7
4,188,281	-		DZA65_RS19365	0.35	+0.0
4,188,281	-		DZA65_RS19365	0.35	+0.1
4,188,478	+		DZA65_RS19365	0.77	-0.3
4,188,478	+		DZA65_RS19365	0.77	+0.6
4,188,479	-		DZA65_RS19365	0.77	+0.0
4,188,479	-		DZA65_RS19365	0.77	-2.0
4,188,503	+		DZA65_RS19365	0.83	-0.8
4,188,503	+		DZA65_RS19365	0.83	+1.2
4,188,504	-		DZA65_RS19365	0.83	+0.7
4,188,507	+		DZA65_RS19365	0.83	+0.1
4,188,507	+		DZA65_RS19365	0.83	-1.3
4,188,508	-		DZA65_RS19365	0.84	+0.0
4,188,508	-		DZA65_RS19365	0.84	-0.6
4,188,508	-		DZA65_RS19365	0.84	+0.1
4,188,508	-		DZA65_RS19365	0.84	-0.5
4,188,508	-		DZA65_RS19365	0.84	-0.3
4,188,508	-		DZA65_RS19365	0.84	+0.3
4,188,513	-		DZA65_RS19365	0.85	-0.5
4,188,625	+				+0.4
4,188,625	+				-1.6
4,188,625	+				-0.0
4,188,697	+		DZA65_RS19370	0.16	-0.1
4,188,697	+				+0.9
4,188,698	-		DZA65_RS19370	0.16	-1.6
4,188,836	-		DZA65_RS19370	0.34	-0.5
4,188,836	-		DZA65_RS19370	0.34	+0.4
4,188,844	+		DZA65_RS19370	0.35	-0.3
4,188,844	+		DZA65_RS19370	0.35	+0.2
4,188,888	+		DZA65_RS19370	0.41	+1.1
4,188,888	+		DZA65_RS19370	0.41	+0.4
4,188,888	+		DZA65_RS19370	0.41	+0.4
4,188,888	+		DZA65_RS19370	0.41	+0.3
4,188,888	+		DZA65_RS19370	0.41	-0.4
4,188,888	+		DZA65_RS19370	0.41	+0.2
4,188,888	+		DZA65_RS19370	0.41	-0.4
4,188,888	+		DZA65_RS19370	0.41	-0.3
4,188,888	+		DZA65_RS19370	0.41	-0.3
4,188,888	+		DZA65_RS19370	0.41	-0.2
4,188,888	+		DZA65_RS19370	0.41	+0.5
4,188,888	+		DZA65_RS19370	0.41	+0.9
4,188,888	+		DZA65_RS19370	0.41	-0.5
4,188,888	+		DZA65_RS19370	0.41	+0.7
4,188,888	+		DZA65_RS19370	0.41	-0.7
4,188,888	+		DZA65_RS19370	0.41	+0.2
4,188,888	+		DZA65_RS19370	0.41	-0.0
4,188,888	+		DZA65_RS19370	0.41	-1.9
4,188,888	+		DZA65_RS19370	0.41	-1.8
4,188,889	-		DZA65_RS19370	0.41	-0.0
4,188,889	-		DZA65_RS19370	0.41	-0.3
4,188,889	-		DZA65_RS19370	0.41	-1.3
4,188,889	-		DZA65_RS19370	0.41	-1.2
4,188,889	-		DZA65_RS19370	0.41	+0.7
4,188,889	-		DZA65_RS19370	0.41	+1.3
4,188,889	-		DZA65_RS19370	0.41	+0.9
4,188,889	-		DZA65_RS19370	0.41	+1.2
4,188,889	-		DZA65_RS19370	0.41	-0.2
4,188,889	-		DZA65_RS19370	0.41	+0.4
4,188,889	-		DZA65_RS19370	0.41	+0.1
4,188,889	-		DZA65_RS19370	0.41	-0.5
4,188,889	-		DZA65_RS19370	0.41	+1.1
4,188,889	-		DZA65_RS19370	0.41	+0.4
4,188,889	-		DZA65_RS19370	0.41	-1.4
4,188,889	-		DZA65_RS19370	0.41	+0.4
4,188,889	-		DZA65_RS19370	0.41	+0.1
4,189,063	+		DZA65_RS19370	0.63	+0.5
4,189,063	+		DZA65_RS19370	0.63	+0.6
4,189,063	+		DZA65_RS19370	0.63	-0.8
4,189,063	+		DZA65_RS19370	0.63	+0.4
4,189,063	+		DZA65_RS19370	0.63	+0.2
4,189,063	+		DZA65_RS19370	0.63	+1.2
4,189,063	+		DZA65_RS19370	0.63	+0.2
4,189,063	+		DZA65_RS19370	0.63	-0.5
4,189,064	-		DZA65_RS19370	0.63	+0.5
4,189,064	-		DZA65_RS19370	0.63	-1.3
4,189,064	-		DZA65_RS19370	0.63	-0.2
4,189,064	-		DZA65_RS19370	0.63	-1.6
4,189,064	-		DZA65_RS19370	0.63	+1.0
4,189,064	-		DZA65_RS19370	0.63	-0.7
4,189,091	+				-0.4
4,189,091	+		DZA65_RS19370	0.67	+0.7
4,189,092	-		DZA65_RS19370	0.67	-0.4
4,189,092	-		DZA65_RS19370	0.67	+0.0
4,189,264	+		DZA65_RS19370	0.89	-1.4
4,189,264	+		DZA65_RS19370	0.89	+0.1
4,189,264	+		DZA65_RS19370	0.89	-0.2
4,189,264	+		DZA65_RS19370	0.89	-1.5
4,189,264	+		DZA65_RS19370	0.89	+1.2
4,189,264	+		DZA65_RS19370	0.89	-0.9
4,189,264	+		DZA65_RS19370	0.89	-0.1
4,189,265	-		DZA65_RS19370	0.89	-0.1
4,189,265	-		DZA65_RS19370	0.89	-0.0
4,189,265	-		DZA65_RS19370	0.89	-3.0
4,189,265	-		DZA65_RS19370	0.89	+0.9
4,189,265	-		DZA65_RS19370	0.89	-0.2
4,189,265	-		DZA65_RS19370	0.89	+0.4
4,189,265	-		DZA65_RS19370	0.89	+1.9
4,189,265	-		DZA65_RS19370	0.89	-1.1
4,189,265	-		DZA65_RS19370	0.89	-0.2
4,189,306	+				+0.4
4,189,306	+				+0.6
4,189,322	-				+0.2
4,189,346	+				-0.4
4,189,354	+				-1.1
4,189,354	+				-1.1
4,189,354	+				+1.6
4,189,354	+				+0.6
4,189,354	+				-0.1
4,189,354	+				-0.4
4,189,354	+				+1.1
4,189,354	+				-0.3
4,189,355	-				-0.8
4,189,355	-				-0.7
4,189,355	-				+1.2
4,189,355	-				+0.6
4,189,355	-				-0.6
4,189,355	-				-0.2
4,189,355	-				-1.2
4,189,355	-				+0.2
4,189,355	-				+0.6
4,189,355	-				+0.4
4,189,387	+				+1.9
4,189,388	-				-0.5
4,189,388	-				-0.7
4,189,389	+				+0.5
4,189,390	-				-0.4
4,189,390	-				+2.0
4,189,390	-				-0.8
4,189,403	-				+0.9
4,189,404	+				+0.9
4,189,465	-				-1.0
4,189,465	-				-0.5
4,189,465	-				-0.0
4,189,465	-				-1.2
4,189,465	-				-2.5
4,189,465	-				+0.5
4,189,465	-				-2.3
4,189,509	+				-0.4
4,189,509	+				-0.3
4,189,509	+				-0.1
4,189,509	+				+0.2
4,189,509	+				+0.3
4,189,509	+				-1.7
4,189,509	+				+0.2
4,189,510	-				-1.3
4,189,510	-				+0.5
4,189,510	-				-0.3
4,189,510	-				-1.7
4,189,510	-				-1.0
4,189,510	-				+0.5
4,189,542	+				-0.3
4,189,542	+				+0.1
4,189,543	-				-1.3
4,189,675	+		DZA65_RS19375	0.26	+0.1
4,189,676	-		DZA65_RS19375	0.27	-0.6
4,189,676	-		DZA65_RS19375	0.27	-1.3
4,189,753	+		DZA65_RS19375	0.39	-0.9
4,189,753	+		DZA65_RS19375	0.39	+0.6
4,189,854	+		DZA65_RS19375	0.55	+0.0
4,189,854	+		DZA65_RS19375	0.55	+0.3
4,189,855	-		DZA65_RS19375	0.56	+0.1
4,189,893	+		DZA65_RS19375	0.62	+0.4
4,189,894	-		DZA65_RS19375	0.62	-0.9
4,189,918	-		DZA65_RS19375	0.66	-0.5
4,190,121	-				-0.6
4,190,125	+				+0.8
4,190,125	+				-1.0
4,190,125	+				-2.0
4,190,125	+				-0.5
4,190,125	+				+0.7
4,190,126	-				+0.6
4,190,126	-				-1.1
4,190,141	+				-0.5
4,190,141	+				+0.6
4,190,142	-				+0.8
4,190,182	+				+0.2
4,190,183	-				+0.6
4,190,240	-				-0.4
4,190,240	-				-0.4
4,190,334	+				-0.4
4,190,335	-				+0.0
4,190,344	+				-0.5
4,190,344	+				-2.3
4,190,344	+				-0.3
4,190,344	+				-0.9
4,190,344	+				+0.2
4,190,344	+				-1.6
4,190,344	+				+0.0
4,190,344	+				-0.4
4,190,344	+				-2.0
4,190,344	+				-1.8
4,190,344	+				-0.6
4,190,344	+				-3.0
4,190,345	-				-0.4
4,190,345	-				-0.1
4,190,345	-				-1.7
4,190,345	-				-1.8
4,190,345	-				-1.4
4,190,345	-				-0.3
4,190,345	-				-1.0
4,190,345	-				-1.0
4,190,345	-				+0.2
4,190,345	-				-1.0
4,190,345	-				-1.1
4,190,345	-				-0.3
4,190,345	-				-1.4
4,190,345	-				-0.2
4,190,345	-				-1.9
4,190,346	+				+0.0
4,190,346	+				-1.6
4,190,346	+				-2.0
4,190,346	+				+0.2
4,190,346	+				-0.6
4,190,347	-				-0.3
4,190,347	-				-0.8
4,190,347	-				-1.0
4,190,347	-				-1.1
4,190,347	-				-2.1
4,190,347	-				-1.5
4,190,347	-				-1.8
4,190,347	-				-0.1
4,190,347	-				+0.2