Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17555

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,782,216	+				+0.2
3,782,225	+				-1.4
3,782,226	-				-1.3
3,782,232	+				-0.6
3,782,233	-				-0.1
3,782,233	-				+1.1
3,782,241	+				-2.1
3,782,241	+				-1.7
3,782,241	+				+1.1
3,782,241	+				-0.2
3,782,241	+				-1.3
3,782,241	+				+0.1
3,782,241	+				-0.7
3,782,241	+				+0.1
3,782,241	+				-0.8
3,782,241	+				-0.2
3,782,242	-				-0.5
3,782,242	-				-0.5
3,782,242	-				-1.3
3,782,242	-				-0.9
3,782,248	+				+0.5
3,782,248	+				-0.1
3,782,248	+				-0.3
3,782,248	+				+0.4
3,782,248	+				+0.4
3,782,249	-				+0.7
3,782,249	-				+0.4
3,782,249	-				+0.5
3,782,249	-				-0.5
3,782,249	-				-1.0
3,782,256	+				-0.0
3,782,256	+				-1.4
3,782,256	+				+1.1
3,782,256	+				-1.3
3,782,256	+				-1.3
3,782,256	+				-0.1
3,782,257	-				-1.2
3,782,257	-				+0.1
3,782,257	-				+0.1
3,782,267	+				-1.7
3,782,267	+				-0.7
3,782,267	+				-0.1
3,782,267	+				-2.8
3,782,268	-				-0.2
3,782,268	-				-0.5
3,782,336	+				-0.3
3,782,344	+				-2.7
3,782,345	-				-0.5
3,782,366	+				-1.2
3,782,366	+				-1.1
3,782,366	+				-0.1
3,782,367	-				-0.3
3,782,367	-				-0.0
3,782,367	-				+0.4
3,782,367	-				-0.4
3,782,367	-				-0.3
3,782,537	-		DZA65_RS17550	0.18	-0.9
3,782,547	+		DZA65_RS17550	0.20	-0.5
3,782,547	+		DZA65_RS17550	0.20	+1.1
3,782,547	+		DZA65_RS17550	0.20	-1.0
3,782,548	-		DZA65_RS17550	0.20	+0.4
3,782,640	+		DZA65_RS17550	0.32	-2.3
3,782,640	+		DZA65_RS17550	0.32	-0.5
3,782,640	+		DZA65_RS17550	0.32	+0.8
3,782,640	+		DZA65_RS17550	0.32	-0.1
3,782,640	+		DZA65_RS17550	0.32	-1.2
3,782,640	+		DZA65_RS17550	0.32	-0.5
3,782,640	+		DZA65_RS17550	0.32	-1.9
3,782,640	+		DZA65_RS17550	0.32	-0.1
3,782,640	+		DZA65_RS17550	0.32	+0.8
3,782,640	+		DZA65_RS17550	0.32	+0.6
3,782,640	+		DZA65_RS17550	0.32	-1.1
3,782,640	+		DZA65_RS17550	0.32	+0.1
3,782,640	+		DZA65_RS17550	0.32	+0.4
3,782,640	+		DZA65_RS17550	0.32	-0.1
3,782,640	+		DZA65_RS17550	0.32	-0.4
3,782,640	+		DZA65_RS17550	0.32	-0.3
3,782,640	+		DZA65_RS17550	0.32	-0.3
3,782,640	+		DZA65_RS17550	0.32	+0.5
3,782,641	-		DZA65_RS17550	0.33	-0.2
3,782,641	-		DZA65_RS17550	0.33	+0.0
3,782,641	-		DZA65_RS17550	0.33	-1.2
3,782,641	-		DZA65_RS17550	0.33	-0.1
3,782,641	-		DZA65_RS17550	0.33	-0.9
3,782,641	-		DZA65_RS17550	0.33	-0.6
3,782,641	-		DZA65_RS17550	0.33	+1.1
3,782,641	-		DZA65_RS17550	0.33	-2.1
3,782,641	-		DZA65_RS17550	0.33	-2.6
3,782,641	-		DZA65_RS17550	0.33	-0.4
3,782,641	-				-0.5
3,782,641	-		DZA65_RS17550	0.33	+0.5
3,782,641	-		DZA65_RS17550	0.33	+1.1
3,782,641	-		DZA65_RS17550	0.33	-1.3
3,782,641	-		DZA65_RS17550	0.33	-0.5
3,782,641	-		DZA65_RS17550	0.33	-1.3
3,782,641	-		DZA65_RS17550	0.33	+1.6
3,782,641	-		DZA65_RS17550	0.33	-0.2
3,782,641	-		DZA65_RS17550	0.33	-0.2
3,782,642	+		DZA65_RS17550	0.33	-0.2
3,782,642	+		DZA65_RS17550	0.33	-0.2
3,782,642	+		DZA65_RS17550	0.33	+0.3
3,782,642	+		DZA65_RS17550	0.33	-0.8
3,782,642	+		DZA65_RS17550	0.33	+0.7
3,782,642	+		DZA65_RS17550	0.33	+0.1
3,782,643	-		DZA65_RS17550	0.33	-1.8
3,782,643	-		DZA65_RS17550	0.33	-1.9
3,782,694	+		DZA65_RS17550	0.40	-0.3
3,782,694	+		DZA65_RS17550	0.40	+0.6
3,782,694	+		DZA65_RS17550	0.40	-0.2
3,782,695	-		DZA65_RS17550	0.40	-1.0
3,782,695	-		DZA65_RS17550	0.40	+0.4
3,782,724	+		DZA65_RS17550	0.44	-0.0
3,782,724	+		DZA65_RS17550	0.44	-0.0
3,782,724	+		DZA65_RS17550	0.44	-0.1
3,782,724	+		DZA65_RS17550	0.44	-0.5
3,782,724	+		DZA65_RS17550	0.44	-0.5
3,782,725	-		DZA65_RS17550	0.44	-0.3
3,782,725	-		DZA65_RS17550	0.44	-1.2
3,782,725	-		DZA65_RS17550	0.44	+0.3
3,782,725	-		DZA65_RS17550	0.44	-0.6
3,782,725	-		DZA65_RS17550	0.44	-0.6
3,782,725	-		DZA65_RS17550	0.44	+1.1
3,782,725	-		DZA65_RS17550	0.44	+0.3
3,782,838	+		DZA65_RS17550	0.60	+0.4
3,782,839	-		DZA65_RS17550	0.60	+0.5
3,782,839	-		DZA65_RS17550	0.60	+0.3
3,782,874	+		DZA65_RS17550	0.65	-0.4
3,782,875	-		DZA65_RS17550	0.65	+1.1
3,782,891	-		DZA65_RS17550	0.67	+1.1
3,782,904	+		DZA65_RS17550	0.69	+0.3
3,782,904	+		DZA65_RS17550	0.69	-1.5
3,782,904	+		DZA65_RS17550	0.69	-0.2
3,782,904	+		DZA65_RS17550	0.69	+0.8
3,782,904	+		DZA65_RS17550	0.69	-0.2
3,782,905	-		DZA65_RS17550	0.69	-0.4
3,782,905	-		DZA65_RS17550	0.69	-0.3
3,782,905	-		DZA65_RS17550	0.69	-0.7
3,782,905	-		DZA65_RS17550	0.69	-1.7
3,782,905	-		DZA65_RS17550	0.69	+0.8
3,782,911	+		DZA65_RS17550	0.70	-0.2
3,782,911	+		DZA65_RS17550	0.70	-0.5
3,782,911	+		DZA65_RS17550	0.70	+2.3
3,782,911	+		DZA65_RS17550	0.70	-0.3
3,782,911	+		DZA65_RS17550	0.70	-0.2
3,782,911	+		DZA65_RS17550	0.70	-0.8
3,782,912	-		DZA65_RS17550	0.70	-0.2
3,782,912	-		DZA65_RS17550	0.70	-0.0
3,782,912	-		DZA65_RS17550	0.70	-1.9
3,782,914	+		DZA65_RS17550	0.70	+0.7
3,782,914	+		DZA65_RS17550	0.70	+0.1
3,782,914	+		DZA65_RS17550	0.70	+1.7
3,782,914	+		DZA65_RS17550	0.70	-1.2
3,782,914	+		DZA65_RS17550	0.70	-0.4
3,782,915	-		DZA65_RS17550	0.70	-0.5
3,782,915	-		DZA65_RS17550	0.70	-0.3
3,782,915	-		DZA65_RS17550	0.70	-1.6
3,782,915	-		DZA65_RS17550	0.70	-0.7
3,782,915	-		DZA65_RS17550	0.70	+0.8
3,782,968	+		DZA65_RS17550	0.78	-0.9
3,783,080	+				+1.1
3,783,080	+				-1.1
3,783,080	+				-0.2
3,783,080	+				-1.9
3,783,080	+				-0.0
3,783,080	+				-0.1
3,783,080	+				-0.7
3,783,080	+				-0.5
3,783,080	+				+0.6
3,783,080	+				+0.7
3,783,080	+				-0.1
3,783,080	+				-0.4
3,783,080	+				-1.2
3,783,080	+				-0.9
3,783,080	+				+0.5
3,783,081	-				-0.1
3,783,081	-				+1.4
3,783,081	-				+1.1
3,783,081	-				+0.1
3,783,081	-				+0.7
3,783,081	-				-0.9
3,783,081	-				-0.0
3,783,081	-				-0.1
3,783,081	-				-0.5
3,783,081	-				+0.8
3,783,081	-				+0.4
3,783,081	-				+0.8
3,783,081	-				-0.5
3,783,081	-				-0.5
3,783,081	-				+1.1
3,783,081	-				-0.9
3,783,081	-				-0.4
3,783,081	-				-0.1
3,783,081	-				-0.1
3,783,081	-				-0.1
3,783,081	-				-0.2
3,783,081	-				+0.2
3,783,174	-				-0.6
3,783,174	-				-1.4
3,783,207	-				-1.1
3,783,237	+				+0.4
3,783,238	-				+0.5
3,783,284	+				-0.4
3,783,285	-				+0.5
3,783,387	+		DZA65_RS17555	0.16	-0.3
3,783,387	+		DZA65_RS17555	0.16	-0.6
3,783,388	-		DZA65_RS17555	0.16	+0.1
3,783,412	+		DZA65_RS17555	0.17	-0.2
3,783,460	-		DZA65_RS17555	0.20	+0.1
3,783,738	-		DZA65_RS17555	0.36	-1.0
3,783,738	-		DZA65_RS17555	0.36	-0.2
3,783,830	+		DZA65_RS17555	0.42	-0.7
3,783,830	+		DZA65_RS17555	0.42	-0.4
3,783,830	+		DZA65_RS17555	0.42	-0.5
3,783,830	+		DZA65_RS17555	0.42	-1.4
3,783,831	-		DZA65_RS17555	0.42	+0.6
3,783,831	-		DZA65_RS17555	0.42	-2.2
3,783,831	-		DZA65_RS17555	0.42	+1.7
3,783,950	+		DZA65_RS17555	0.49	-0.7
3,783,951	-		DZA65_RS17555	0.49	-0.1
3,783,964	-		DZA65_RS17555	0.50	-0.2
3,784,097	+		DZA65_RS17555	0.58	+0.1
3,784,097	+		DZA65_RS17555	0.58	-0.1
3,784,097	+		DZA65_RS17555	0.58	+0.1
3,784,097	+		DZA65_RS17555	0.58	+0.0
3,784,098	-		DZA65_RS17555	0.58	-1.2
3,784,098	-		DZA65_RS17555	0.58	+0.8
3,784,098	-		DZA65_RS17555	0.58	-1.1
3,784,098	-		DZA65_RS17555	0.58	-0.5
3,784,098	-		DZA65_RS17555	0.58	-0.2
3,784,098	-		DZA65_RS17555	0.58	-0.6
3,784,098	-		DZA65_RS17555	0.58	+0.6
3,784,098	-		DZA65_RS17555	0.58	+0.1
3,784,098	-		DZA65_RS17555	0.58	-0.7
3,784,102	-		DZA65_RS17555	0.58	-0.9
3,784,102	-		DZA65_RS17555	0.58	+2.1
3,784,120	-		DZA65_RS17555	0.59	-0.9
3,784,120	-		DZA65_RS17555	0.59	-0.4
3,784,152	+		DZA65_RS17555	0.61	-0.3
3,784,152	+		DZA65_RS17555	0.61	+0.3
3,784,152	+		DZA65_RS17555	0.61	-0.2
3,784,153	-		DZA65_RS17555	0.61	-3.0
3,784,205	+		DZA65_RS17555	0.64	-1.5
3,784,205	+		DZA65_RS17555	0.64	-2.1
3,784,205	+		DZA65_RS17555	0.64	-0.3
3,784,206	-		DZA65_RS17555	0.64	-0.6
3,784,206	-		DZA65_RS17555	0.64	-0.5
3,784,206	-		DZA65_RS17555	0.64	+2.5
3,784,245	+		DZA65_RS17555	0.66	-2.6
3,784,245	+		DZA65_RS17555	0.66	-0.1
3,784,246	-		DZA65_RS17555	0.66	-0.2
3,784,246	-		DZA65_RS17555	0.66	+0.4
3,784,246	-		DZA65_RS17555	0.66	-0.8
3,784,246	-		DZA65_RS17555	0.66	+1.4
3,784,344	+		DZA65_RS17555	0.72	+1.4
3,784,345	-		DZA65_RS17555	0.72	-0.4
3,784,345	-		DZA65_RS17555	0.72	-1.9
3,784,345	-		DZA65_RS17555	0.72	+0.5
3,784,401	+		DZA65_RS17555	0.75	-0.6
3,784,551	+		DZA65_RS17555	0.84	+0.1
3,784,552	-		DZA65_RS17555	0.84	-0.4
3,784,640	+		DZA65_RS17555	0.90	-1.5
3,784,640	+		DZA65_RS17555	0.90	-0.2
3,784,640	+		DZA65_RS17555	0.90	+0.1
3,784,641	-		DZA65_RS17555	0.90	-0.2
3,784,641	-		DZA65_RS17555	0.90	-0.3
3,784,641	-		DZA65_RS17555	0.90	-0.9
3,784,725	+				-0.4
3,784,726	-				-0.9
3,784,740	+				-0.2
3,784,740	+				-0.2
3,784,766	+				-0.2
3,784,767	-				-0.3
3,784,792	+				-0.1
3,784,811	+				-1.2
3,784,812	-				+0.1
3,784,812	-				-2.4
3,784,812	-				-1.4
3,784,812	-				-1.1
3,784,818	+				+0.9
3,784,818	+				-0.5
3,784,818	+				+1.1
3,784,818	+				-0.3
3,784,818	+				+0.1
3,784,818	+				-1.2
3,784,819	-				-1.2
3,784,819	-				+0.1
3,784,872	+				-1.8
3,784,873	-				-0.0
3,784,873	-				+0.9
3,784,873	-				+0.8
3,784,877	+				-0.0
3,784,896	+				+0.9
3,784,915	+				+0.6
3,784,916	-				-1.3
3,784,916	-				+0.5
3,784,916	-				-0.2
3,784,916	-				+0.5
3,784,916	-				+0.5
3,784,916	-				+0.6
3,784,921	+				-1.1
3,784,921	+				-0.3
3,784,921	+				+1.1
3,784,921	+				+1.1
3,784,921	+				-1.3
3,784,921	+				-0.5
3,784,922	-				+0.6
3,784,922	-				-0.8
3,784,922	-				-1.1
3,784,922	-				+0.1
3,784,922	-				-0.4
3,784,922	-				-1.8
3,784,994	+				-0.8
3,785,040	+				+1.1
3,785,040	+				+0.5
3,785,040	+				+2.4
3,785,041	-				+0.8
3,785,041	-				+1.1
3,785,041	-				+0.1
3,785,041	-				+0.2
3,785,044	+				-1.2
3,785,044	+				+0.4
3,785,044	+				+0.1
3,785,044	+				-0.3
3,785,044	+				+0.7
3,785,044	+				-0.9
3,785,044	+				+0.6
3,785,044	+				-0.3
3,785,044	+				-1.1
3,785,045	-				+0.4
3,785,045	-				-0.2
3,785,045	-				+0.1
3,785,045	-				-0.2
3,785,045	-				-0.8
3,785,125	+		DZA65_RS17560	0.13	-0.6
3,785,125	+		DZA65_RS17560	0.13	+0.4
3,785,126	-		DZA65_RS17560	0.14	-0.6
3,785,189	-		DZA65_RS17560	0.22	-0.3
3,785,223	+		DZA65_RS17560	0.26	+0.2
3,785,223	+		DZA65_RS17560	0.26	-1.5
3,785,223	+		DZA65_RS17560	0.26	-0.2
3,785,223	+		DZA65_RS17560	0.26	-0.8
3,785,223	+		DZA65_RS17560	0.26	+0.7
3,785,224	-		DZA65_RS17560	0.26	+1.9
3,785,244	+		DZA65_RS17560	0.29	+0.6
3,785,336	+		DZA65_RS17560	0.41	-1.1
3,785,337	-		DZA65_RS17560	0.41	+0.3
3,785,358	+		DZA65_RS17560	0.44	-0.9
3,785,358	+		DZA65_RS17560	0.44	-0.8
3,785,358	+		DZA65_RS17560	0.44	-0.7
3,785,358	+		DZA65_RS17560	0.44	-0.6
3,785,358	+		DZA65_RS17560	0.44	-0.8
3,785,358	+		DZA65_RS17560	0.44	+0.2
3,785,358	+		DZA65_RS17560	0.44	+0.7
3,785,359	-		DZA65_RS17560	0.44	-1.5
3,785,359	-		DZA65_RS17560	0.44	-0.6
3,785,359	-		DZA65_RS17560	0.44	-0.6
3,785,359	-		DZA65_RS17560	0.44	+0.9
3,785,362	+		DZA65_RS17560	0.44	-0.2
3,785,363	-		DZA65_RS17560	0.44	-0.2
3,785,363	-		DZA65_RS17560	0.44	-0.6
3,785,363	-		DZA65_RS17560	0.44	+0.4
3,785,363	-		DZA65_RS17560	0.44	-1.0
3,785,427	+		DZA65_RS17560	0.52	+0.1
3,785,427	+		DZA65_RS17560	0.52	-0.5
3,785,428	-		DZA65_RS17560	0.53	-1.8
3,785,487	+		DZA65_RS17560	0.60	+0.2
3,785,488	-		DZA65_RS17560	0.60	+0.2
3,785,549	-		DZA65_RS17560	0.68	-0.1
3,785,549	-		DZA65_RS17560	0.68	-0.9
3,785,549	-		DZA65_RS17560	0.68	-1.2
3,785,698	+		DZA65_RS17560	0.87	+0.7
3,785,698	+		DZA65_RS17560	0.87	-1.0
3,785,699	-		DZA65_RS17560	0.88	+0.8
3,785,699	-		DZA65_RS17560	0.88	-0.5
3,785,699	-		DZA65_RS17560	0.88	-0.9
3,785,699	-		DZA65_RS17560	0.88	-0.3
3,785,700	+		DZA65_RS17560	0.88	-0.9
3,785,700	+		DZA65_RS17560	0.88	-0.9
3,785,700	+		DZA65_RS17560	0.88	+0.1
3,785,700	+		DZA65_RS17560	0.88	-0.6
3,785,700	+		DZA65_RS17560	0.88	+0.6
3,785,701	-		DZA65_RS17560	0.88	-0.6
3,785,701	-		DZA65_RS17560	0.88	-0.2
3,785,701	-				+1.1
3,785,701	-		DZA65_RS17560	0.88	-1.4
3,785,708	+		DZA65_RS17560	0.89	-0.1
3,785,709	-		DZA65_RS17560	0.89	+0.3
3,785,709	-		DZA65_RS17560	0.89	+0.1
3,785,709	-		DZA65_RS17560	0.89	-0.9
3,785,718	+				-0.0
3,785,803	-				-0.8
3,785,803	-				-0.1
3,785,806	+				-0.3
3,785,806	+				-0.6
3,785,806	+				-0.9
3,785,806	+				+0.3
3,785,807	-				+0.4
3,785,807	-				-1.0
3,785,807	-				-0.7