Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17175

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,707,394	+		DZA65_RS17165	0.67	-0.8
3,707,395	-		DZA65_RS17165	0.68	-0.6
3,707,395	-		DZA65_RS17165	0.68	-2.1
3,707,395	-		DZA65_RS17165	0.68	-1.4
3,707,404	+		DZA65_RS17165	0.70	+0.3
3,707,404	+		DZA65_RS17165	0.70	+0.6
3,707,404	+		DZA65_RS17165	0.70	+0.7
3,707,404	+		DZA65_RS17165	0.70	+0.9
3,707,404	+		DZA65_RS17165	0.70	-0.5
3,707,404	+		DZA65_RS17165	0.70	+0.6
3,707,405	-		DZA65_RS17165	0.70	-1.5
3,707,405	-		DZA65_RS17165	0.70	+0.6
3,707,405	-		DZA65_RS17165	0.70	-0.5
3,707,456	-		DZA65_RS17165	0.84	+2.1
3,707,456	-		DZA65_RS17165	0.84	+0.3
3,707,472	+		DZA65_RS17165	0.88	-0.1
3,707,472	+		DZA65_RS17165	0.88	+0.1
3,707,472	+		DZA65_RS17165	0.88	+0.8
3,707,472	+		DZA65_RS17165	0.88	-0.2
3,707,472	+		DZA65_RS17165	0.88	-0.6
3,707,472	+		DZA65_RS17165	0.88	-0.4
3,707,472	+		DZA65_RS17165	0.88	-1.2
3,707,473	-		DZA65_RS17165	0.88	-1.0
3,707,473	-		DZA65_RS17165	0.88	+0.0
3,707,473	-		DZA65_RS17165	0.88	-0.1
3,707,473	-		DZA65_RS17165	0.88	-0.8
3,707,473	-		DZA65_RS17165	0.88	-0.5
3,707,473	-		DZA65_RS17165	0.88	+0.4
3,707,473	-		DZA65_RS17165	0.88	+0.5
3,707,587	+				-0.3
3,707,588	-				-0.5
3,707,635	+				+0.0
3,707,729	+		DZA65_RS17170	0.19	-0.2
3,707,729	+		DZA65_RS17170	0.19	+3.1
3,707,729	+		DZA65_RS17170	0.19	-0.6
3,707,730	-		DZA65_RS17170	0.19	+0.1
3,707,730	-		DZA65_RS17170	0.19	-1.0
3,707,730	-		DZA65_RS17170	0.19	-0.3
3,707,730	-		DZA65_RS17170	0.19	+0.2
3,707,730	-		DZA65_RS17170	0.19	-0.6
3,707,730	-		DZA65_RS17170	0.19	-2.2
3,707,730	-		DZA65_RS17170	0.19	-1.1
3,707,730	-		DZA65_RS17170	0.19	-0.6
3,707,730	-		DZA65_RS17170	0.19	-2.6
3,707,731	+		DZA65_RS17170	0.19	-0.5
3,707,731	+		DZA65_RS17170	0.19	+0.5
3,707,731	+		DZA65_RS17170	0.19	-0.2
3,707,731	+		DZA65_RS17170	0.19	+0.5
3,707,732	-		DZA65_RS17170	0.19	+0.0
3,707,732	-		DZA65_RS17170	0.19	-0.1
3,707,732	-		DZA65_RS17170	0.19	+0.6
3,707,732	-		DZA65_RS17170	0.19	-0.9
3,707,732	-				-1.2
3,707,732	-		DZA65_RS17170	0.19	-0.1
3,707,775	+		DZA65_RS17170	0.25	+0.7
3,707,791	+		DZA65_RS17170	0.27	-1.1
3,707,791	+		DZA65_RS17170	0.27	-0.8
3,707,792	-		DZA65_RS17170	0.27	-0.5
3,707,792	-		DZA65_RS17170	0.27	+0.5
3,707,792	-		DZA65_RS17170	0.27	+1.1
3,707,792	-		DZA65_RS17170	0.27	+0.2
3,707,809	+		DZA65_RS17170	0.29	-0.3
3,707,809	+		DZA65_RS17170	0.29	+2.1
3,707,810	-		DZA65_RS17170	0.29	-0.5
3,707,810	-				+0.5
3,707,949	+		DZA65_RS17170	0.47	-1.6
3,707,949	+		DZA65_RS17170	0.47	+0.8
3,707,949	+		DZA65_RS17170	0.47	-0.9
3,707,949	+		DZA65_RS17170	0.47	+0.1
3,707,949	+		DZA65_RS17170	0.47	+0.8
3,707,949	+		DZA65_RS17170	0.47	-0.1
3,707,949	+		DZA65_RS17170	0.47	-1.3
3,707,949	+		DZA65_RS17170	0.47	+0.6
3,707,949	+		DZA65_RS17170	0.47	+0.6
3,707,949	+		DZA65_RS17170	0.47	-0.5
3,707,949	+		DZA65_RS17170	0.47	+0.1
3,707,949	+		DZA65_RS17170	0.47	-1.5
3,707,949	+		DZA65_RS17170	0.47	+0.6
3,707,949	+		DZA65_RS17170	0.47	+0.7
3,707,950	-		DZA65_RS17170	0.47	+1.1
3,707,950	-		DZA65_RS17170	0.47	-0.1
3,707,950	-		DZA65_RS17170	0.47	+0.2
3,707,950	-		DZA65_RS17170	0.47	-1.2
3,707,950	-		DZA65_RS17170	0.47	+0.3
3,707,950	-		DZA65_RS17170	0.47	+0.3
3,707,950	-		DZA65_RS17170	0.47	+0.1
3,708,031	+		DZA65_RS17170	0.58	-0.7
3,708,032	-		DZA65_RS17170	0.58	-0.2
3,708,044	+		DZA65_RS17170	0.59	+0.8
3,708,044	+		DZA65_RS17170	0.59	-1.2
3,708,044	+		DZA65_RS17170	0.59	-1.7
3,708,045	-		DZA65_RS17170	0.60	+0.1
3,708,130	+		DZA65_RS17170	0.71	-0.1
3,708,131	-		DZA65_RS17170	0.71	-0.4
3,708,131	-		DZA65_RS17170	0.71	+0.0
3,708,131	-		DZA65_RS17170	0.71	-1.1
3,708,131	-		DZA65_RS17170	0.71	+0.3
3,708,131	-		DZA65_RS17170	0.71	-0.2
3,708,141	-		DZA65_RS17170	0.72	-1.2
3,708,184	+		DZA65_RS17170	0.78	-0.5
3,708,184	+		DZA65_RS17170	0.78	+0.2
3,708,184	+		DZA65_RS17170	0.78	+0.4
3,708,184	+		DZA65_RS17170	0.78	+0.8
3,708,184	+		DZA65_RS17170	0.78	-1.1
3,708,184	+		DZA65_RS17170	0.78	-0.3
3,708,184	+		DZA65_RS17170	0.78	-0.1
3,708,185	-		DZA65_RS17170	0.78	-0.2
3,708,185	-		DZA65_RS17170	0.78	-0.7
3,708,188	+		DZA65_RS17170	0.78	-0.2
3,708,189	-		DZA65_RS17170	0.78	+0.2
3,708,189	-		DZA65_RS17170	0.78	+0.1
3,708,189	-		DZA65_RS17170	0.78	+0.0
3,708,244	+		DZA65_RS17170	0.85	-1.9
3,708,244	+		DZA65_RS17170	0.85	+0.9
3,708,244	+		DZA65_RS17170	0.85	-0.4
3,708,245	-		DZA65_RS17170	0.85	+0.7
3,708,245	-		DZA65_RS17170	0.85	+1.4
3,708,245	-		DZA65_RS17170	0.85	+0.6
3,708,324	-				+0.3
3,708,343	+				-1.3
3,708,343	+				+0.8
3,708,343	+				+0.7
3,708,344	-				+1.1
3,708,344	-				-0.6
3,708,344	-				-0.4
3,708,344	-				-1.4
3,708,344	-				+0.4
3,708,345	+				-2.1
3,708,345	+				-1.0
3,708,346	-				-0.2
3,708,346	-				-0.5
3,708,346	-				+1.5
3,708,346	-				-0.5
3,708,361	+				+0.1
3,708,362	-				-1.2
3,708,362	-				+0.7
3,708,373	+				+0.9
3,708,424	+				-1.2
3,708,425	-				-1.1
3,708,425	-				-0.7
3,708,466	+		DZA65_RS17175	0.12	+0.6
3,708,466	+		DZA65_RS17175	0.12	+1.1
3,708,466	+		DZA65_RS17175	0.12	-0.4
3,708,467	-				+2.3
3,708,509	-		DZA65_RS17175	0.17	+0.1
3,708,509	-		DZA65_RS17175	0.17	-0.7
3,708,509	-		DZA65_RS17175	0.17	+0.1
3,708,509	-		DZA65_RS17175	0.17	+0.6
3,708,515	-		DZA65_RS17175	0.18	-0.2
3,708,694	-		DZA65_RS17175	0.37	+0.6
3,708,694	-		DZA65_RS17175	0.37	+1.1
3,708,899	+		DZA65_RS17175	0.59	-0.6
3,708,899	+		DZA65_RS17175	0.59	-0.6
3,708,899	+		DZA65_RS17175	0.59	+0.6
3,708,919	-		DZA65_RS17175	0.61	+1.3
3,708,960	+		DZA65_RS17175	0.66	+1.2
3,708,960	+		DZA65_RS17175	0.66	-0.0
3,708,961	-		DZA65_RS17175	0.66	-0.3
3,708,963	+		DZA65_RS17175	0.66	-0.8
3,709,176	+		DZA65_RS17175	0.89	-0.1
3,709,176	+		DZA65_RS17175	0.89	+0.6
3,709,176	+		DZA65_RS17175	0.89	-1.4
3,709,177	-		DZA65_RS17175	0.89	+0.5
3,709,237	-				+0.6
3,709,269	+				+0.3
3,709,269	+				-0.0
3,709,269	+				-0.0
3,709,269	+				+0.3
3,709,269	+				-1.0
3,709,269	+				-0.1
3,709,269	+				+1.2
3,709,269	+				+0.0
3,709,269	+				-1.5
3,709,269	+				-0.9
3,709,269	+				+1.1
3,709,269	+				-0.1
3,709,269	+				-1.2
3,709,269	+				-0.2
3,709,269	+				+0.4
3,709,269	+				+0.3
3,709,269	+				+0.9
3,709,269	+				-0.1
3,709,269	+				+1.0
3,709,269	+				-0.0
3,709,270	-				+0.7
3,709,270	-				+0.7
3,709,270	-				-0.2
3,709,270	-				-0.9
3,709,270	-				-0.1
3,709,270	-				-0.5
3,709,270	-				-0.7
3,709,270	-				+0.8
3,709,270	-				+0.1
3,709,270	-				-1.2
3,709,270	-				+0.8
3,709,270	-				+0.9
3,709,270	-				-0.9
3,709,270	-				-0.3
3,709,270	-				+1.3
3,709,270	-				+0.6
3,709,270	-				+0.3
3,709,270	-				-0.6
3,709,270	-				+0.4
3,709,270	-				+0.3
3,709,270	-				-1.4
3,709,270	-				+0.7
3,709,270	-				-0.2
3,709,270	-				-0.4
3,709,276	+				-1.5
3,709,277	-				+0.1
3,709,277	-				+0.0
3,709,293	+				+0.1
3,709,293	+				+0.7
3,709,293	+				-0.1
3,709,293	+				-0.4
3,709,293	+				-0.9
3,709,293	+				-1.4
3,709,293	+				-1.2
3,709,293	+				+0.3
3,709,294	-				+0.1
3,709,294	-				-0.9
3,709,294	-				+0.5
3,709,294	-				-1.0
3,709,304	-				-0.9
3,709,356	+				-2.2
3,709,356	+				-0.7
3,709,356	+				-0.3
3,709,356	+				-1.5
3,709,356	+				-2.3
3,709,356	+				-1.4
3,709,356	+				-0.2
3,709,358	+				+1.1
3,709,358	+				-0.6
3,709,358	+				+0.7
3,709,358	+				-0.8
3,709,358	+				-1.2
3,709,358	+				-0.4
3,709,385	+				-0.5
3,709,396	+				-0.9
3,710,042	+				-1.1
3,710,042	+				-0.2
3,710,043	-				-0.4
3,710,090	+				-0.3
3,710,091	-				-1.3
3,710,142	-		DZA65_RS17185	0.10	-2.7
3,710,241	+		DZA65_RS17185	0.29	-0.9
3,710,241	+		DZA65_RS17185	0.29	+0.9
3,710,241	+		DZA65_RS17185	0.29	-0.1
3,710,241	+		DZA65_RS17185	0.29	-1.2
3,710,242	-		DZA65_RS17185	0.29	-0.3
3,710,242	-		DZA65_RS17185	0.29	-0.0
3,710,242	-		DZA65_RS17185	0.29	+0.8
3,710,247	+		DZA65_RS17185	0.30	-1.7
3,710,248	-		DZA65_RS17185	0.30	+0.4