Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16975

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,664,727	+		DZA65_RS16970	0.32	-1.3
3,664,727	+		DZA65_RS16970	0.32	-1.1
3,664,727	+		DZA65_RS16970	0.32	+0.9
3,664,727	+		DZA65_RS16970	0.32	-0.1
3,664,727	+		DZA65_RS16970	0.32	-0.2
3,664,728	-		DZA65_RS16970	0.32	+0.5
3,664,728	-		DZA65_RS16970	0.32	+0.7
3,664,728	-		DZA65_RS16970	0.32	+1.1
3,664,748	+		DZA65_RS16970	0.33	-1.9
3,664,748	+		DZA65_RS16970	0.33	-1.3
3,664,749	-		DZA65_RS16970	0.34	+0.6
3,664,749	-		DZA65_RS16970	0.34	+0.3
3,664,765	-		DZA65_RS16970	0.35	-0.5
3,664,823	+		DZA65_RS16970	0.39	-1.7
3,664,855	+		DZA65_RS16970	0.42	-0.1
3,664,855	+		DZA65_RS16970	0.42	+0.1
3,664,855	+		DZA65_RS16970	0.42	+0.3
3,664,855	+		DZA65_RS16970	0.42	-0.2
3,664,855	+		DZA65_RS16970	0.42	-0.3
3,664,856	-		DZA65_RS16970	0.42	-0.5
3,664,856	-		DZA65_RS16970	0.42	-2.2
3,664,856	-		DZA65_RS16970	0.42	+0.3
3,664,856	-		DZA65_RS16970	0.42	-1.8
3,664,856	-		DZA65_RS16970	0.42	-0.9
3,664,859	+		DZA65_RS16970	0.42	-0.3
3,664,859	+		DZA65_RS16970	0.42	+0.3
3,664,859	+		DZA65_RS16970	0.42	-0.5
3,664,859	+		DZA65_RS16970	0.42	-0.7
3,664,859	+		DZA65_RS16970	0.42	-0.3
3,664,859	+		DZA65_RS16970	0.42	-0.6
3,664,859	+		DZA65_RS16970	0.42	+0.3
3,664,859	+		DZA65_RS16970	0.42	-1.3
3,664,860	-		DZA65_RS16970	0.42	-2.1
3,664,860	-		DZA65_RS16970	0.42	-0.7
3,664,860	-		DZA65_RS16970	0.42	-0.0
3,664,860	-		DZA65_RS16970	0.42	-0.5
3,664,860	-		DZA65_RS16970	0.42	+0.3
3,664,860	-		DZA65_RS16970	0.42	-1.1
3,664,860	-		DZA65_RS16970	0.42	+0.3
3,664,862	+		DZA65_RS16970	0.42	-0.9
3,664,863	-		DZA65_RS16970	0.43	+0.3
3,664,935	+		DZA65_RS16970	0.48	+0.2
3,664,935	+		DZA65_RS16970	0.48	-1.9
3,664,935	+		DZA65_RS16970	0.48	-1.8
3,664,935	+		DZA65_RS16970	0.48	+0.3
3,664,935	+		DZA65_RS16970	0.48	+0.2
3,664,935	+		DZA65_RS16970	0.48	-0.2
3,664,935	+		DZA65_RS16970	0.48	-0.9
3,664,935	+		DZA65_RS16970	0.48	-1.3
3,664,935	+		DZA65_RS16970	0.48	-1.7
3,664,935	+		DZA65_RS16970	0.48	-0.1
3,664,935	+		DZA65_RS16970	0.48	-0.1
3,664,935	+		DZA65_RS16970	0.48	+0.5
3,664,936	-		DZA65_RS16970	0.48	-0.5
3,664,936	-		DZA65_RS16970	0.48	+1.1
3,664,936	-		DZA65_RS16970	0.48	-0.3
3,664,936	-		DZA65_RS16970	0.48	-1.3
3,664,936	-		DZA65_RS16970	0.48	-0.0
3,664,936	-		DZA65_RS16970	0.48	-1.7
3,664,936	-		DZA65_RS16970	0.48	-0.7
3,664,936	-		DZA65_RS16970	0.48	-1.5
3,664,936	-		DZA65_RS16970	0.48	-0.5
3,664,936	-		DZA65_RS16970	0.48	-1.1
3,664,936	-		DZA65_RS16970	0.48	-0.3
3,664,936	-		DZA65_RS16970	0.48	-0.7
3,665,047	-		DZA65_RS16970	0.57	+0.1
3,665,061	+		DZA65_RS16970	0.58	-1.4
3,665,061	+		DZA65_RS16970	0.58	+0.8
3,665,061	+		DZA65_RS16970	0.58	+0.3
3,665,062	-		DZA65_RS16970	0.58	+0.4
3,665,062	-		DZA65_RS16970	0.58	-0.8
3,665,062	-		DZA65_RS16970	0.58	+0.5
3,665,090	+		DZA65_RS16970	0.60	-0.8
3,665,090	+		DZA65_RS16970	0.60	-1.3
3,665,116	+		DZA65_RS16970	0.62	-2.4
3,665,123	+		DZA65_RS16970	0.63	-0.3
3,665,124	-		DZA65_RS16970	0.63	-0.4
3,665,232	+		DZA65_RS16970	0.72	+0.2
3,665,232	+		DZA65_RS16970	0.72	+0.0
3,665,233	-		DZA65_RS16970	0.72	-1.3
3,665,233	-		DZA65_RS16970	0.72	-0.3
3,665,249	+		DZA65_RS16970	0.73	-0.5
3,665,250	-		DZA65_RS16970	0.73	-1.0
3,665,265	-		DZA65_RS16970	0.74	-0.3
3,665,265	-		DZA65_RS16970	0.74	-0.4
3,665,268	+		DZA65_RS16970	0.74	-0.7
3,665,314	-		DZA65_RS16970	0.78	+0.5
3,665,324	+		DZA65_RS16970	0.79	-0.8
3,665,336	+		DZA65_RS16970	0.80	-0.7
3,665,337	-		DZA65_RS16970	0.80	-1.1
3,665,377	+		DZA65_RS16970	0.83	-2.0
3,665,377	+		DZA65_RS16970	0.83	-0.7
3,665,386	-		DZA65_RS16970	0.84	-0.4
3,665,386	-		DZA65_RS16970	0.84	+0.2
3,665,386	-		DZA65_RS16970	0.84	-0.3
3,665,549	-				-0.8
3,665,581	+				-2.4
3,665,581	+				+0.1
3,665,581	+				-1.1
3,665,581	+				+1.0
3,665,581	+				-0.6
3,665,582	-				-0.5
3,665,582	-				-0.5
3,665,582	-				-0.5
3,665,582	-				-0.5
3,665,582	-				-1.6
3,665,585	+				-1.3
3,665,585	+				-0.5
3,665,585	+				-0.5
3,665,586	-				-0.4
3,665,586	-				-0.9
3,665,586	-				+1.3
3,665,586	-				+1.4
3,665,586	-				-0.1
3,665,615	+				-0.3
3,665,635	-				-0.7
3,665,678	-				+0.6
3,667,151	-				-0.5
3,667,254	-				+0.4
3,667,254	-				-0.3
3,667,254	-				-0.2
3,667,259	-				-0.9
3,667,259	-				-1.2
3,667,259	-				-0.5
3,667,307	+				+0.7
3,667,308	-				-1.0
3,667,308	-				-0.9
3,667,317	-				+0.3
3,667,348	+				+0.1
3,667,349	-				-0.4
3,667,352	+				+0.1
3,667,353	-				+0.4
3,667,367	-				+0.2
3,667,373	-				-1.0
3,667,373	-				-0.4
3,667,373	-				-1.9
3,667,549	+				+1.1
3,667,555	+				-0.8
3,667,555	+				-0.8
3,667,663	-		DZA65_RS16990	0.11	-0.3
3,667,752	+				-0.5
3,667,752	+				+0.1
3,667,752	+				-0.5
3,667,754	+				-0.4
3,667,755	-				+0.3
3,667,769	+				-0.6
3,667,780	+				-0.8
3,667,781	-				+0.3
3,667,795	+				+0.1
3,667,795	+				+0.1
3,667,795	+				-0.3
3,667,796	-				+1.1
3,667,798	+				-1.0
3,667,817	+				+1.1
3,667,817	+				-0.3
3,667,818	-				-0.9
3,667,834	-				+0.1
3,667,958	-				-0.6
3,667,980	+				-0.7
3,667,980	+				-0.5
3,667,980	+				-1.5
3,667,980	+				+0.1
3,667,981	-				-1.5
3,667,981	-				+1.3
3,667,981	-				-0.2
3,667,999	+				+0.7
3,667,999	+				-1.0
3,668,055	-				+0.2
3,668,055	-				-0.9
3,668,055	-				-0.2
3,668,081	+				+0.5
3,668,082	-				+0.8
3,668,108	-				-0.0
3,668,125	-				-2.5
3,668,129	+				-1.7