Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16450

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	PDB
				remove
3,562,862	+			+0.0
3,562,862	+			-1.6
3,562,862	+			-0.5
3,562,862	+			-0.5
3,562,862	+			-0.6
3,562,863	-			+0.7
3,562,863	-			-0.6
3,562,863	-			+0.4
3,562,863	-			+0.6
3,562,864	+			-0.9
3,562,864	+			-0.2
3,562,864	+			+0.4
3,562,864	+			+0.7
3,562,864	+			-0.5
3,562,864	+			-0.3
3,562,864	+			-0.1
3,562,864	+			-0.2
3,562,865	-			+0.0
3,562,865	-			-1.8
3,562,865	-			+0.1
3,562,865	-			+1.8
3,562,865	-			+1.0
3,562,865	-			-0.5
3,562,865	-			+0.5
3,562,865	-			-0.3
3,562,899	-			-1.4
3,562,904	+			+0.3
3,562,948	+			-0.3
3,562,976	+			-0.9
3,562,976	+			+0.4
3,562,977	-			-0.2
3,562,977	-			+0.8
3,562,992	-			-0.3
3,563,009	+	DZA65_RS16445	0.11	-0.8
3,563,043	-	DZA65_RS16445	0.16	-2.7
3,563,099	-	DZA65_RS16445	0.22	+0.4
3,563,099	-	DZA65_RS16445	0.22	-0.3
3,563,099	-	DZA65_RS16445	0.22	-0.4
3,563,165	-	DZA65_RS16445	0.31	-1.3
3,563,196	+	DZA65_RS16445	0.34	+0.3
3,563,196	+	DZA65_RS16445	0.34	-0.2
3,563,197	-	DZA65_RS16445	0.34	+1.2
3,563,197	-	DZA65_RS16445	0.34	+0.1
3,563,240	+	DZA65_RS16445	0.40	-0.6
3,563,241	-	DZA65_RS16445	0.40	-1.8
3,563,241	-	DZA65_RS16445	0.40	-0.5
3,563,323	+	DZA65_RS16445	0.50	+0.0
3,563,324	-	DZA65_RS16445	0.50	+0.2
3,563,324	-	DZA65_RS16445	0.50	-0.6
3,563,338	+	DZA65_RS16445	0.52	-0.4
3,563,338	+	DZA65_RS16445	0.52	-0.2
3,563,338	+	DZA65_RS16445	0.52	-1.2
3,563,338	+	DZA65_RS16445	0.52	+0.6
3,563,338	+	DZA65_RS16445	0.52	+0.1
3,563,339	-	DZA65_RS16445	0.52	+0.3
3,563,339	-	DZA65_RS16445	0.52	+1.0
3,563,341	+	DZA65_RS16445	0.52	-1.0
3,563,455	+	DZA65_RS16445	0.66	+0.7
3,563,491	+	DZA65_RS16445	0.70	+0.6
3,563,491	+	DZA65_RS16445	0.70	+0.2
3,563,491	+	DZA65_RS16445	0.70	+0.7
3,563,491	+	DZA65_RS16445	0.70	-1.2
3,563,491	+	DZA65_RS16445	0.70	-0.8
3,563,491	+	DZA65_RS16445	0.70	-0.6
3,563,491	+	DZA65_RS16445	0.70	-0.2
3,563,491	+			+1.0
3,563,491	+	DZA65_RS16445	0.70	+0.2
3,563,491	+	DZA65_RS16445	0.70	+0.6
3,563,491	+	DZA65_RS16445	0.70	+0.6
3,563,492	-	DZA65_RS16445	0.71	+0.6
3,563,492	-	DZA65_RS16445	0.71	+1.0
3,563,492	-	DZA65_RS16445	0.71	-1.7
3,563,492	-	DZA65_RS16445	0.71	+0.0
3,563,492	-	DZA65_RS16445	0.71	+0.3
3,563,492	-	DZA65_RS16445	0.71	-1.6
3,563,492	-	DZA65_RS16445	0.71	-0.9
3,563,492	-	DZA65_RS16445	0.71	-0.4
3,563,492	-	DZA65_RS16445	0.71	-1.2
3,563,492	-	DZA65_RS16445	0.71	+0.7
3,563,492	-	DZA65_RS16445	0.71	+0.1
3,563,492	-	DZA65_RS16445	0.71	-1.0
3,563,492	-	DZA65_RS16445	0.71	-0.1
3,563,492	-	DZA65_RS16445	0.71	-1.1
3,563,492	-	DZA65_RS16445	0.71	-0.2
3,563,511	+	DZA65_RS16445	0.73	-0.9
3,563,511	+	DZA65_RS16445	0.73	+0.3
3,563,511	+	DZA65_RS16445	0.73	+0.3
3,563,511	+	DZA65_RS16445	0.73	-1.3
3,563,511	+	DZA65_RS16445	0.73	+1.8
3,563,511	+	DZA65_RS16445	0.73	-0.2
3,563,511	+	DZA65_RS16445	0.73	+0.3
3,563,512	-	DZA65_RS16445	0.73	-1.1
3,563,512	-	DZA65_RS16445	0.73	-0.1
3,563,513	+	DZA65_RS16445	0.73	-2.6
3,563,513	+	DZA65_RS16445	0.73	+0.1
3,563,513	+	DZA65_RS16445	0.73	-0.2
3,563,513	+	DZA65_RS16445	0.73	-0.4
3,563,513	+	DZA65_RS16445	0.73	+0.6
3,563,513	+	DZA65_RS16445	0.73	+0.2
3,563,514	-	DZA65_RS16445	0.73	+0.3
3,563,514	-	DZA65_RS16445	0.73	+0.5
3,563,514	-	DZA65_RS16445	0.73	-0.8
3,563,514	-	DZA65_RS16445	0.73	+0.2
3,563,514	-	DZA65_RS16445	0.73	+0.3
3,563,693	-			-0.4
3,563,779	+	DZA65_RS16450	0.17	+0.4
3,563,779	+	DZA65_RS16450	0.17	+0.0
3,563,779	+			-1.3
3,563,779	+	DZA65_RS16450	0.17	+0.8
3,563,780	-	DZA65_RS16450	0.18	-1.1
3,563,780	-			+1.0
3,563,780	-	DZA65_RS16450	0.18	-0.6
3,563,802	-	DZA65_RS16450	0.25	-0.7
3,563,821	-	DZA65_RS16450	0.31	-0.4
3,563,856	+	DZA65_RS16450	0.42	+1.0
3,563,856	+	DZA65_RS16450	0.42	+0.0
3,563,856	+	DZA65_RS16450	0.42	-1.8
3,563,856	+	DZA65_RS16450	0.42	-1.1
3,563,857	-	DZA65_RS16450	0.42	-0.6
3,563,857	-	DZA65_RS16450	0.42	-0.3
3,563,857	-	DZA65_RS16450	0.42	-1.0
3,563,857	-	DZA65_RS16450	0.42	+0.3
3,563,857	-	DZA65_RS16450	0.42	-0.3
3,564,061	+			-0.1
3,564,061	+			+0.1
3,564,062	-			-1.8
3,564,062	-			+0.3
3,564,062	-			-0.6
3,564,064	+			-1.0
3,564,064	+			-0.2
3,564,064	+			-0.4
3,564,064	+			-0.4
3,564,065	-			+0.4
3,564,065	-			-0.3
3,564,230	+	DZA65_RS16455	0.12	+0.6
3,564,241	+	DZA65_RS16455	0.12	+0.1
3,564,242	-	DZA65_RS16455	0.12	+1.7
3,564,242	-	DZA65_RS16455	0.12	-0.2
3,564,260	-	DZA65_RS16455	0.13	-0.2
3,564,387	+	DZA65_RS16455	0.21	+0.4
3,564,387	+	DZA65_RS16455	0.21	-0.7
3,564,387	+	DZA65_RS16455	0.21	+0.5
3,564,387	+	DZA65_RS16455	0.21	-1.2
3,564,388	-	DZA65_RS16455	0.21	-0.4
3,564,388	-	DZA65_RS16455	0.21	+0.3
3,564,388	-	DZA65_RS16455	0.21	-0.6
3,564,388	-	DZA65_RS16455	0.21	-0.1
3,564,388	-	DZA65_RS16455	0.21	+0.2
3,564,388	-	DZA65_RS16455	0.21	-0.2
3,564,388	-	DZA65_RS16455	0.21	+0.5
3,564,388	-	DZA65_RS16455	0.21	+0.3
3,564,416	+	DZA65_RS16455	0.23	-0.3
3,564,416	+	DZA65_RS16455	0.23	-0.4
3,564,417	-	DZA65_RS16455	0.23	+0.9
3,564,417	-	DZA65_RS16455	0.23	+0.0
3,564,417	-	DZA65_RS16455	0.23	+0.0
3,564,417	-	DZA65_RS16455	0.23	+0.4
3,564,530	+	DZA65_RS16455	0.30	-1.0
3,564,531	-	DZA65_RS16455	0.30	-0.2
3,564,531	-	DZA65_RS16455	0.30	-0.3
3,564,643	+	DZA65_RS16455	0.36	-0.9
3,564,643	+	DZA65_RS16455	0.36	-0.9
3,564,643	+	DZA65_RS16455	0.36	-0.9
3,564,644	-	DZA65_RS16455	0.36	+0.9
3,564,644	-	DZA65_RS16455	0.36	-1.1
3,564,644	-	DZA65_RS16455	0.36	+0.0
3,564,644	-	DZA65_RS16455	0.36	+0.1
3,564,644	-	DZA65_RS16455	0.36	+0.0
3,564,662	+	DZA65_RS16455	0.38	+0.1
3,564,662	+	DZA65_RS16455	0.38	-0.3
3,564,662	+	DZA65_RS16455	0.38	+0.5
3,564,662	+	DZA65_RS16455	0.38	+0.3
3,564,691	-	DZA65_RS16455	0.39	-0.2
3,564,691	-	DZA65_RS16455	0.39	-0.6
3,564,700	+	DZA65_RS16455	0.40	-0.1
3,564,700	+	DZA65_RS16455	0.40	-0.1
3,564,730	+	DZA65_RS16455	0.42	+0.5
3,564,732	+	DZA65_RS16455	0.42	-1.7
3,564,732	+	DZA65_RS16455	0.42	-2.0
3,564,732	+	DZA65_RS16455	0.42	-1.1
3,564,732	+			+1.0
3,564,732	+	DZA65_RS16455	0.42	-0.2
3,564,732	+	DZA65_RS16455	0.42	-0.2
3,564,732	+	DZA65_RS16455	0.42	+0.7
3,564,732	+	DZA65_RS16455	0.42	-2.1
3,564,732	+	DZA65_RS16455	0.42	-0.6
3,564,732	+	DZA65_RS16455	0.42	+0.4
3,564,732	+	DZA65_RS16455	0.42	-1.3
3,564,732	+	DZA65_RS16455	0.42	+0.2
3,564,733	-	DZA65_RS16455	0.42	+0.4
3,564,733	-	DZA65_RS16455	0.42	+0.4
3,564,733	-	DZA65_RS16455	0.42	-0.4
3,564,733	-	DZA65_RS16455	0.42	-1.2
3,564,733	-	DZA65_RS16455	0.42	-0.1
3,564,733	-	DZA65_RS16455	0.42	-0.1
3,564,733	-	DZA65_RS16455	0.42	+0.3
3,564,733	-	DZA65_RS16455	0.42	-1.8
3,564,733	-	DZA65_RS16455	0.42	+0.4
3,564,733	-	DZA65_RS16455	0.42	+1.0
3,564,733	-	DZA65_RS16455	0.42	+0.8
3,564,733	-	DZA65_RS16455	0.42	-1.1
3,564,733	-	DZA65_RS16455	0.42	-0.2
3,564,733	-	DZA65_RS16455	0.42	-2.7
3,564,750	-	DZA65_RS16455	0.43	+0.0
3,564,857	+	DZA65_RS16455	0.49	-1.7
3,564,858	-	DZA65_RS16455	0.49	+0.3
3,564,858	-	DZA65_RS16455	0.49	+1.3
3,564,897	+	DZA65_RS16455	0.52	-0.4
3,564,898	-	DZA65_RS16455	0.52	-0.8
3,564,934	+	DZA65_RS16455	0.54	+0.4
3,564,968	+	DZA65_RS16455	0.56	-1.2
3,564,968	+	DZA65_RS16455	0.56	+1.0
3,564,969	-	DZA65_RS16455	0.56	-0.9
3,564,969	-	DZA65_RS16455	0.56	-2.0
3,564,969	-	DZA65_RS16455	0.56	-0.3
3,564,969	-	DZA65_RS16455	0.56	+0.0
3,564,973	+	DZA65_RS16455	0.56	-0.4
3,564,973	+	DZA65_RS16455	0.56	-0.4
3,564,973	+	DZA65_RS16455	0.56	-0.5
3,564,974	-	DZA65_RS16455	0.56	-2.0
3,564,997	-	DZA65_RS16455	0.58	-0.3
3,564,999	+	DZA65_RS16455	0.58	+0.0
3,565,009	+	DZA65_RS16455	0.58	-0.3
3,565,009	+	DZA65_RS16455	0.58	-0.4
3,565,009	+	DZA65_RS16455	0.58	-0.4
3,565,010	-	DZA65_RS16455	0.58	-0.9
3,565,010	-	DZA65_RS16455	0.58	+0.7
3,565,010	-	DZA65_RS16455	0.58	-0.5
3,565,010	-	DZA65_RS16455	0.58	-0.6
3,565,010	-	DZA65_RS16455	0.58	+1.0

Or see this region's nucleotide sequence