Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15315

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,320,802	+				+1.9
3,320,803	-				-0.8
3,320,803	-				+0.2
3,320,969	-		DZA65_RS15310	0.22	+0.3
3,321,166	+		DZA65_RS15310	0.47	-0.5
3,321,167	-		DZA65_RS15310	0.47	-0.2
3,321,171	+		DZA65_RS15310	0.48	+0.1
3,321,172	-		DZA65_RS15310	0.48	+0.5
3,321,172	-		DZA65_RS15310	0.48	+0.1
3,321,172	-		DZA65_RS15310	0.48	-1.5
3,321,172	-		DZA65_RS15310	0.48	+0.3
3,321,284	+		DZA65_RS15310	0.62	-1.1
3,321,284	+		DZA65_RS15310	0.62	-0.9
3,321,284	+		DZA65_RS15310	0.62	+2.1
3,321,285	-		DZA65_RS15310	0.63	+0.9
3,321,285	-		DZA65_RS15310	0.63	-1.9
3,321,285	-		DZA65_RS15310	0.63	-1.2
3,321,314	+		DZA65_RS15310	0.66	+0.7
3,321,314	+		DZA65_RS15310	0.66	+0.6
3,321,315	-		DZA65_RS15310	0.66	+0.8
3,321,315	-		DZA65_RS15310	0.66	-1.1
3,321,315	-		DZA65_RS15310	0.66	-0.9
3,321,315	-		DZA65_RS15310	0.66	+0.6
3,321,315	-		DZA65_RS15310	0.66	-2.2
3,321,332	+		DZA65_RS15310	0.69	+1.2
3,321,332	+		DZA65_RS15310	0.69	-0.9
3,321,333	-		DZA65_RS15310	0.69	+0.2
3,321,333	-		DZA65_RS15310	0.69	-0.8
3,321,424	+		DZA65_RS15310	0.80	-0.5
3,321,424	+		DZA65_RS15310	0.80	-0.8
3,321,424	+		DZA65_RS15310	0.80	-1.0
3,321,425	-		DZA65_RS15310	0.81	+1.5
3,321,425	-		DZA65_RS15310	0.81	-0.0
3,321,425	-		DZA65_RS15310	0.81	-0.7
3,321,475	+		DZA65_RS15310	0.87	+2.1
3,321,476	-		DZA65_RS15310	0.87	+0.1
3,321,476	-		DZA65_RS15310	0.87	-0.1
3,321,476	-		DZA65_RS15310	0.87	+0.7
3,321,476	-		DZA65_RS15310	0.87	-1.0
3,321,476	-		DZA65_RS15310	0.87	+0.4
3,321,490	+		DZA65_RS15310	0.89	-1.3
3,321,490	+		DZA65_RS15310	0.89	+0.4
3,321,538	+				-0.2
3,321,538	+				+0.5
3,321,538	+				-0.0
3,321,538	+				-0.5
3,321,538	+				+1.6
3,321,538	+				-0.8
3,321,539	-				-0.4
3,321,539	-				-0.1
3,321,539	-				-2.5
3,321,542	+				-0.2
3,321,542	+				-0.1
3,321,542	+				-0.1
3,321,542	+				-1.0
3,321,542	+				-0.7
3,321,542	+				-0.3
3,321,542	+				+1.7
3,321,542	+				+0.2
3,321,542	+				-1.8
3,321,542	+				-0.6
3,321,542	+				+0.1
3,321,543	-				-1.4
3,321,543	-				-1.0
3,321,543	-				-0.8
3,321,543	-				+0.0
3,321,543	-				-0.4
3,321,543	-				-0.3
3,321,562	+				+0.9
3,321,563	-				-0.7
3,321,563	-				-0.9
3,321,565	+				+0.4
3,321,565	+				+0.6
3,321,565	+				-1.4
3,321,565	+				-0.1
3,321,565	+				-0.0
3,321,565	+				-0.1
3,321,566	-				+0.5
3,321,595	-				-0.5
3,321,598	+				-0.7
3,321,599	-				-0.1
3,321,599	-				-0.2
3,321,701	+		DZA65_RS15315	0.12	+0.1
3,321,701	+		DZA65_RS15315	0.12	-0.8
3,321,701	+		DZA65_RS15315	0.12	-0.3
3,321,701	+		DZA65_RS15315	0.12	+0.2
3,321,701	+		DZA65_RS15315	0.12	+1.4
3,321,701	+		DZA65_RS15315	0.12	+0.3
3,321,702	-		DZA65_RS15315	0.12	-0.4
3,321,702	-		DZA65_RS15315	0.12	+0.9
3,321,702	-		DZA65_RS15315	0.12	-0.5
3,321,702	-		DZA65_RS15315	0.12	-1.0
3,321,702	-		DZA65_RS15315	0.12	+0.2
3,321,702	-		DZA65_RS15315	0.12	-0.4
3,321,729	-		DZA65_RS15315	0.16	-0.2
3,321,729	-		DZA65_RS15315	0.16	-1.0
3,321,738	+		DZA65_RS15315	0.17	+0.4
3,321,738	+		DZA65_RS15315	0.17	-0.7
3,321,738	+				+1.7
3,321,740	+		DZA65_RS15315	0.18	+0.3
3,321,740	+		DZA65_RS15315	0.18	+1.6
3,321,740	+		DZA65_RS15315	0.18	-0.5
3,321,740	+		DZA65_RS15315	0.18	+1.2
3,321,740	+		DZA65_RS15315	0.18	-0.4
3,321,740	+		DZA65_RS15315	0.18	+0.6
3,321,740	+		DZA65_RS15315	0.18	+1.1
3,321,740	+		DZA65_RS15315	0.18	-1.0
3,321,740	+		DZA65_RS15315	0.18	-0.1
3,321,740	+		DZA65_RS15315	0.18	+0.9
3,321,741	-		DZA65_RS15315	0.18	-0.5
3,321,741	-		DZA65_RS15315	0.18	+0.1
3,321,741	-		DZA65_RS15315	0.18	-0.2
3,321,741	-		DZA65_RS15315	0.18	-0.8
3,321,741	-		DZA65_RS15315	0.18	-0.7
3,321,741	-		DZA65_RS15315	0.18	-1.0
3,321,754	-		DZA65_RS15315	0.20	+0.9
3,321,754	-		DZA65_RS15315	0.20	-0.3
3,321,756	+		DZA65_RS15315	0.20	-1.1
3,321,756	+		DZA65_RS15315	0.20	-0.3
3,321,757	-		DZA65_RS15315	0.20	+0.3
3,321,843	-		DZA65_RS15315	0.32	-0.2
3,321,874	+		DZA65_RS15315	0.36	+0.7
3,321,874	+		DZA65_RS15315	0.36	-1.1
3,321,874	+		DZA65_RS15315	0.36	+0.9
3,321,981	+		DZA65_RS15315	0.51	+0.7
3,321,982	-		DZA65_RS15315	0.51	-0.3
3,321,984	-		DZA65_RS15315	0.52	-0.2
3,321,984	-		DZA65_RS15315	0.52	-0.4
3,321,984	-		DZA65_RS15315	0.52	-0.3
3,321,984	-		DZA65_RS15315	0.52	+0.2
3,321,984	-		DZA65_RS15315	0.52	-0.1
3,322,082	+		DZA65_RS15315	0.65	+0.8
3,322,082	+		DZA65_RS15315	0.65	-0.1
3,322,083	-		DZA65_RS15315	0.66	-0.0
3,322,083	-		DZA65_RS15315	0.66	-0.7
3,322,083	-		DZA65_RS15315	0.66	-0.4
3,322,083	-		DZA65_RS15315	0.66	+0.9
3,322,094	+		DZA65_RS15315	0.67	-0.2
3,322,095	-		DZA65_RS15315	0.67	-0.8
3,322,115	+		DZA65_RS15315	0.70	+0.1
3,322,115	+		DZA65_RS15315	0.70	-0.5
3,322,115	+		DZA65_RS15315	0.70	+1.6
3,322,115	+		DZA65_RS15315	0.70	-0.3
3,322,115	+		DZA65_RS15315	0.70	+1.0
3,322,115	+		DZA65_RS15315	0.70	+0.4
3,322,116	-		DZA65_RS15315	0.70	-0.7
3,322,116	-		DZA65_RS15315	0.70	+0.3
3,322,139	+		DZA65_RS15315	0.73	+0.5
3,322,139	+		DZA65_RS15315	0.73	+1.7
3,322,139	+		DZA65_RS15315	0.73	-0.8
3,322,139	+		DZA65_RS15315	0.73	+0.1
3,322,139	+		DZA65_RS15315	0.73	+0.6
3,322,139	+		DZA65_RS15315	0.73	-0.2
3,322,139	+		DZA65_RS15315	0.73	-0.9
3,322,139	+		DZA65_RS15315	0.73	+0.5
3,322,139	+		DZA65_RS15315	0.73	-0.1
3,322,139	+		DZA65_RS15315	0.73	-0.1
3,322,139	+		DZA65_RS15315	0.73	+0.3
3,322,140	-		DZA65_RS15315	0.74	-1.4
3,322,140	-		DZA65_RS15315	0.74	+0.9
3,322,140	-		DZA65_RS15315	0.74	+0.2
3,322,140	-		DZA65_RS15315	0.74	-0.1
3,322,140	-		DZA65_RS15315	0.74	-0.2
3,322,140	-		DZA65_RS15315	0.74	-0.3
3,322,140	-		DZA65_RS15315	0.74	-1.4
3,322,140	-		DZA65_RS15315	0.74	+0.5
3,322,143	+		DZA65_RS15315	0.74	-0.1
3,322,144	-		DZA65_RS15315	0.74	-0.2
3,322,144	-		DZA65_RS15315	0.74	+0.0
3,322,144	-		DZA65_RS15315	0.74	+0.7
3,322,307	+				-0.7
3,322,307	+				-0.7
3,322,307	+				-0.2
3,322,307	+				-0.9
3,322,308	-				+1.1
3,322,308	-				+0.3
3,322,329	+				-0.0
3,322,329	+				-0.2
3,322,329	+				+1.2
3,322,329	+				-0.8
3,322,329	+				+0.7
3,322,329	+				+0.4
3,322,334	+				-0.7
3,322,335	-				-0.6
3,322,356	+				-0.3
3,322,399	+		DZA65_RS15320	0.11	+0.1
3,322,399	+		DZA65_RS15320	0.11	-0.9
3,322,400	-		DZA65_RS15320	0.11	+0.2
3,322,410	+		DZA65_RS15320	0.13	+0.9
3,322,410	+		DZA65_RS15320	0.13	+1.5
3,322,410	+		DZA65_RS15320	0.13	+0.1
3,322,411	-		DZA65_RS15320	0.13	-1.4
3,322,411	-		DZA65_RS15320	0.13	-0.7
3,322,665	+		DZA65_RS15320	0.50	-0.3
3,322,665	+		DZA65_RS15320	0.50	-0.2
3,322,692	+		DZA65_RS15320	0.54	-1.3
3,322,692	+		DZA65_RS15320	0.54	-0.2
3,322,693	-		DZA65_RS15320	0.54	-0.4
3,322,693	-		DZA65_RS15320	0.54	-1.6
3,322,705	+		DZA65_RS15320	0.56	-0.2
3,322,705	+		DZA65_RS15320	0.56	-1.7
3,322,706	-		DZA65_RS15320	0.56	+0.5
3,322,706	-		DZA65_RS15320	0.56	-2.5
3,322,717	+		DZA65_RS15320	0.57	+2.1
3,322,717	+		DZA65_RS15320	0.57	-0.3
3,322,717	+		DZA65_RS15320	0.57	-1.2
3,322,720	+		DZA65_RS15320	0.58	+1.1
3,322,721	-				-0.4
3,322,721	-		DZA65_RS15320	0.58	-1.5
3,322,721	-		DZA65_RS15320	0.58	+0.2
3,322,762	+		DZA65_RS15320	0.64	-0.5
3,322,855	+		DZA65_RS15320	0.77	+0.7
3,322,855	+		DZA65_RS15320	0.77	+0.8
3,322,855	+		DZA65_RS15320	0.77	-0.1
3,322,855	+		DZA65_RS15320	0.77	+0.1
3,322,855	+		DZA65_RS15320	0.77	+0.2
3,322,855	+		DZA65_RS15320	0.77	-0.5
3,322,855	+		DZA65_RS15320	0.77	+1.7
3,322,855	+		DZA65_RS15320	0.77	-0.5
3,322,856	-				+0.1
3,322,856	-		DZA65_RS15320	0.77	+0.2
3,322,856	-		DZA65_RS15320	0.77	+0.2
3,322,856	-		DZA65_RS15320	0.77	-0.5
3,322,856	-		DZA65_RS15320	0.77	+0.5
3,322,856	-		DZA65_RS15320	0.77	+0.4
3,322,856	-		DZA65_RS15320	0.77	-0.5
3,322,858	-		DZA65_RS15320	0.78	-0.9
3,322,922	+		DZA65_RS15320	0.87	+0.6
3,322,988	+				+0.2
3,322,988	+				+0.3
3,322,988	+				-0.1
3,322,989	-				-1.0
3,322,989	-				+0.7
3,323,004	+				+0.2
3,323,004	+				-1.8
3,323,005	-				+1.2
3,323,005	-				-0.5
3,323,012	+				-1.0
3,323,012	+				+0.4
3,323,012	+				-0.5
3,323,012	+				-1.1
3,323,013	-				-1.0
3,323,013	-				-2.1
3,323,013	-				-0.6
3,323,013	-				-0.2
3,323,081	+				+0.8
3,323,081	+				-1.5
3,323,108	+				-0.3
3,323,108	+				+0.3
3,323,108	+				-0.3
3,323,108	+				-0.9
3,323,108	+				-1.7
3,323,109	-				-0.5
3,323,125	-				-1.2
3,323,125	-				-2.4
3,323,129	+				+0.2
3,323,129	+				+0.7
3,323,129	+				+0.4
3,323,129	+				-0.7
3,323,129	+				+0.5
3,323,129	+				+0.4
3,323,130	-				-1.2
3,323,130	-				+0.8
3,323,134	-				-0.9
3,323,264	+		DZA65_RS15325	0.24	-1.1
3,323,264	+		DZA65_RS15325	0.24	-0.1
3,323,265	-				+2.1
3,323,265	-		DZA65_RS15325	0.24	-1.0
3,323,265	-		DZA65_RS15325	0.24	-1.9
3,323,265	-		DZA65_RS15325	0.24	-1.3