Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14915

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,250,735	+		DZA65_RS14910	0.55	-0.2
3,250,735	+		DZA65_RS14910	0.55	-0.1
3,250,735	+		DZA65_RS14910	0.55	-1.9
3,250,735	+		DZA65_RS14910	0.55	-2.4
3,250,735	+		DZA65_RS14910	0.55	-1.1
3,250,735	+		DZA65_RS14910	0.55	+0.2
3,250,735	+		DZA65_RS14910	0.55	+1.2
3,250,735	+		DZA65_RS14910	0.55	+0.1
3,250,735	+		DZA65_RS14910	0.55	+0.0
3,250,735	+		DZA65_RS14910	0.55	-0.5
3,250,736	-		DZA65_RS14910	0.55	-2.2
3,250,736	-		DZA65_RS14910	0.55	-0.5
3,250,736	-		DZA65_RS14910	0.55	+0.3
3,250,736	-				+0.9
3,250,744	+		DZA65_RS14910	0.55	-3.2
3,250,744	+		DZA65_RS14910	0.55	-0.5
3,250,744	+		DZA65_RS14910	0.55	+0.9
3,250,745	-		DZA65_RS14910	0.55	+0.4
3,250,745	-		DZA65_RS14910	0.55	-1.1
3,250,745	-		DZA65_RS14910	0.55	+0.1
3,250,756	+		DZA65_RS14910	0.56	-0.9
3,250,756	+		DZA65_RS14910	0.56	-2.0
3,250,756	+		DZA65_RS14910	0.56	+0.6
3,250,756	+		DZA65_RS14910	0.56	-0.1
3,250,790	+		DZA65_RS14910	0.58	-0.5
3,250,790	+		DZA65_RS14910	0.58	+0.2
3,250,809	-		DZA65_RS14910	0.60	-0.2
3,250,887	-		DZA65_RS14910	0.64	-0.6
3,250,962	+		DZA65_RS14910	0.69	-0.7
3,250,962	+		DZA65_RS14910	0.69	-0.4
3,250,963	-		DZA65_RS14910	0.69	-0.4
3,250,963	-		DZA65_RS14910	0.69	-0.0
3,250,963	-		DZA65_RS14910	0.69	-0.7
3,250,963	-		DZA65_RS14910	0.69	+1.2
3,251,068	+		DZA65_RS14910	0.76	-0.3
3,251,147	-		DZA65_RS14910	0.81	+0.3
3,251,147	-		DZA65_RS14910	0.81	-0.4
3,251,147	-		DZA65_RS14910	0.81	-0.4
3,251,150	+		DZA65_RS14910	0.81	-0.3
3,251,150	+		DZA65_RS14910	0.81	+0.1
3,251,150	+		DZA65_RS14910	0.81	+0.2
3,251,150	+		DZA65_RS14910	0.81	-0.1
3,251,150	+		DZA65_RS14910	0.81	+0.4
3,251,151	-		DZA65_RS14910	0.81	-0.8
3,251,151	-		DZA65_RS14910	0.81	+0.0
3,251,205	-		DZA65_RS14910	0.84	-0.1
3,251,218	+		DZA65_RS14910	0.85	+2.2
3,251,218	+		DZA65_RS14910	0.85	+0.7
3,251,219	-		DZA65_RS14910	0.85	-0.3
3,251,219	-		DZA65_RS14910	0.85	+0.5
3,251,219	-		DZA65_RS14910	0.85	-2.8
3,251,219	-		DZA65_RS14910	0.85	+0.3
3,251,219	-		DZA65_RS14910	0.85	+0.1
3,251,219	-		DZA65_RS14910	0.85	-1.1
3,251,219	-		DZA65_RS14910	0.85	-0.2
3,251,324	+				-0.7
3,251,324	+				-1.0
3,251,324	+				-1.1
3,251,324	+				+0.6
3,251,324	+				+0.5
3,251,325	-				-0.4
3,251,325	-				-0.4
3,251,325	-				-0.1
3,251,325	-				+0.2
3,251,414	+				-0.3
3,251,435	+				-0.1
3,251,435	+				-0.9
3,251,460	+				+1.6
3,251,460	+				+1.1
3,251,461	-				-0.7
3,251,491	+				-0.2
3,251,492	-				-0.1
3,251,554	+				-2.2
3,251,555	-				-0.2
3,251,623	+				-0.8
3,251,623	+				+0.9
3,251,623	+				-0.9
3,251,623	+				+1.8
3,251,623	+				-0.4
3,251,624	-				+0.6
3,251,624	-				-0.5
3,251,627	+				-1.2
3,251,627	+				+0.5
3,251,627	+				+0.9
3,251,627	+				+0.1
3,251,627	+				-1.0
3,251,627	+				-0.4
3,251,628	-				+0.5
3,251,628	-				-0.1
3,251,628	-				-3.1
3,251,628	-				+0.3
3,251,686	-				-2.4
3,251,699	+				-1.5
3,251,699	+				-0.5
3,251,699	+				-0.2
3,251,700	-				-1.5
3,251,781	+		DZA65_RS14915	0.13	-1.8
3,251,782	-		DZA65_RS14915	0.13	-0.3
3,251,796	+		DZA65_RS14915	0.15	-1.0
3,251,797	-		DZA65_RS14915	0.15	+1.2
3,251,797	-		DZA65_RS14915	0.15	-0.5
3,251,797	-		DZA65_RS14915	0.15	-0.4
3,251,859	+		DZA65_RS14915	0.22	+1.3
3,251,859	+				+0.9
3,251,859	+		DZA65_RS14915	0.22	-0.8
3,251,859	+		DZA65_RS14915	0.22	-0.3
3,251,859	+		DZA65_RS14915	0.22	-1.9
3,251,859	+		DZA65_RS14915	0.22	-0.4
3,251,860	-		DZA65_RS14915	0.22	+0.2
3,251,860	-		DZA65_RS14915	0.22	-0.6
3,251,860	-		DZA65_RS14915	0.22	-0.1
3,251,860	-		DZA65_RS14915	0.22	-0.4
3,251,860	-		DZA65_RS14915	0.22	-0.6
3,251,860	-		DZA65_RS14915	0.22	-0.8
3,251,860	-		DZA65_RS14915	0.22	-0.9
3,251,860	-		DZA65_RS14915	0.22	+0.2
3,251,860	-				+0.9
3,251,860	-		DZA65_RS14915	0.22	-1.2
3,251,860	-		DZA65_RS14915	0.22	-1.4
3,251,861	+		DZA65_RS14915	0.22	-0.8
3,251,861	+		DZA65_RS14915	0.22	-0.2
3,251,862	-		DZA65_RS14915	0.22	+0.3
3,252,068	-		DZA65_RS14915	0.46	-1.9
3,252,068	-		DZA65_RS14915	0.46	-0.7
3,252,068	-		DZA65_RS14915	0.46	-0.5
3,252,068	-		DZA65_RS14915	0.46	-0.5
3,252,259	+		DZA65_RS14915	0.67	-1.9
3,252,292	+		DZA65_RS14915	0.71	-0.6
3,252,293	-		DZA65_RS14915	0.71	-0.7
3,252,366	+		DZA65_RS14915	0.79	-1.2
3,252,367	-		DZA65_RS14915	0.80	-0.7
3,252,431	+		DZA65_RS14915	0.87	-0.3
3,252,431	+		DZA65_RS14915	0.87	-0.6
3,252,432	-		DZA65_RS14915	0.87	-0.2
3,252,479	-				-0.1
3,252,593	-				-0.1
3,252,655	-				+0.3
3,252,672	-				-0.5
3,252,672	-				-0.1
3,252,674	+				-0.2
3,252,734	+				+0.1
3,252,791	+				+0.1
3,252,791	+				+0.1
3,252,791	+				-0.9
3,252,791	+				+0.4
3,252,791	+				-0.1
3,252,791	+				-0.3
3,252,791	+				-1.4
3,252,792	-				+0.4
3,252,792	-				+0.1
3,252,792	-				-1.9
3,252,795	+				-0.2
3,252,795	+				+0.2
3,252,795	+				-0.3
3,252,796	-				+0.0
3,252,796	-				-2.2
3,252,796	-				+0.0
3,252,796	-				-1.1
3,252,796	-				+0.0
3,252,796	-				-0.3
3,252,796	-				-2.5
3,252,796	-				-1.3
3,252,796	-				+0.2
3,252,801	-				+0.1
3,252,801	-				+0.2
3,252,826	+				+1.0
3,252,837	-				+0.2
3,252,855	+				+0.2
3,252,855	+				-0.2
3,252,856	-				-0.1
3,252,856	-				+0.0
3,252,856	-				+1.7
3,252,936	+				-0.1
3,252,937	-				-0.2
3,252,937	-				+0.3
3,253,053	-				-1.9
3,253,053	-				-0.2
3,253,067	-				+0.3
3,253,068	+				-0.2
3,253,068	+				+0.6
3,253,068	+				+0.5
3,253,068	+				-0.8
3,253,068	+				-0.0
3,253,068	+				-0.6
3,253,069	-				-0.4
3,253,069	-				-1.5
3,253,069	-				-0.5
3,253,069	-				+0.1
3,253,069	-				+0.9
3,253,104	+				-0.1
3,253,105	-				+0.6
3,253,124	+				+1.1
3,253,125	-				+0.6
3,253,140	-				-0.2
3,253,140	-				+0.1
3,253,140	-				-0.1
3,253,140	-				-0.8
3,253,254	+		DZA65_RS14920	0.14	+0.0
3,253,255	-		DZA65_RS14920	0.14	-0.6
3,253,255	-		DZA65_RS14920	0.14	+0.0
3,253,288	+		DZA65_RS14920	0.15	+1.4
3,253,289	-		DZA65_RS14920	0.16	-2.1
3,253,311	+		DZA65_RS14920	0.17	-0.8
3,253,312	-		DZA65_RS14920	0.17	-0.7
3,253,357	+		DZA65_RS14920	0.19	+0.1
3,253,358	-		DZA65_RS14920	0.19	-1.2
3,253,358	-		DZA65_RS14920	0.19	-1.0
3,253,358	-		DZA65_RS14920	0.19	-1.1
3,253,377	+		DZA65_RS14920	0.20	-0.4
3,253,377	+		DZA65_RS14920	0.20	+0.2
3,253,377	+		DZA65_RS14920	0.20	+1.3
3,253,377	+		DZA65_RS14920	0.20	+0.9
3,253,377	+		DZA65_RS14920	0.20	+0.4
3,253,378	-		DZA65_RS14920	0.20	-1.7
3,253,378	-		DZA65_RS14920	0.20	+0.0
3,253,378	-		DZA65_RS14920	0.20	+0.6
3,253,386	-		DZA65_RS14920	0.20	-0.2
3,253,386	-		DZA65_RS14920	0.20	-0.9
3,253,412	-		DZA65_RS14920	0.21	-0.5
3,253,441	+		DZA65_RS14920	0.23	-0.3
3,253,442	-		DZA65_RS14920	0.23	+0.6
3,253,442	-		DZA65_RS14920	0.23	-1.1
3,253,460	-		DZA65_RS14920	0.23	+0.3
3,253,540	+		DZA65_RS14920	0.27	-0.4