Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14170

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,035,792	-				+0.1
3,035,792	-				+0.0
3,035,798	-				-1.9
3,035,832	-				-0.5
3,035,866	-				-1.3
3,035,874	-				+0.2
3,035,874	-				-0.7
3,035,923	+				-0.7
3,035,924	-				+0.7
3,035,924	-				-1.4
3,035,924	-				-0.3
3,035,927	+				+0.9
3,035,927	+				-1.0
3,035,927	+				+0.4
3,035,927	+				-0.1
3,035,927	+				-0.2
3,035,927	+				-2.0
3,035,927	+				+1.4
3,035,927	+				-0.1
3,035,927	+				+0.5
3,035,927	+				-0.5
3,035,928	-				-0.3
3,035,928	-				-1.3
3,035,928	-				-0.5
3,035,928	-				+0.9
3,035,928	-				-1.1
3,035,928	-				-1.0
3,035,928	-				+0.3
3,035,928	-				+0.3
3,035,928	-				-2.2
3,035,928	-				-0.1
3,035,928	-				-0.3
3,035,928	-				-0.3
3,035,933	+				+0.3
3,035,933	+				-0.2
3,035,933	+				+0.2
3,035,933	+				+0.4
3,035,933	+				-1.0
3,035,933	+				-0.7
3,035,933	+				-0.0
3,035,934	-				-0.1
3,035,934	-				+0.3
3,035,934	-				-0.2
3,035,934	-				-0.4
3,035,934	-				+0.7
3,036,029	+				-0.3
3,036,072	+				+0.6
3,036,084	+				+0.0
3,036,085	-				+0.1
3,036,126	+				-0.1
3,036,127	-				+0.9
3,036,127	-				+0.5
3,036,144	+				-0.8
3,036,145	-				+0.7
3,036,179	+				-0.4
3,036,223	+				+0.1
3,036,235	-				-0.7
3,036,247	+				-1.4
3,036,304	+				-1.4
3,036,659	+				-1.1
3,036,660	-				+0.4
3,036,662	-				-0.3
3,036,669	+				+0.2
3,036,669	+				+0.4
3,036,669	+				+0.3
3,036,670	-				+0.2
3,036,670	-				-0.5
3,036,688	-				-0.1
3,036,688	-				-1.2
3,036,754	+				+0.1
3,036,755	-				+0.1
3,036,755	-				+0.2
3,036,755	-				-0.1
3,036,755	-				-0.1
3,036,755	-				-1.3
3,036,755	-				-1.1
3,036,755	-				-1.7
3,036,755	-				+0.6
3,036,755	-				-1.5
3,036,755	-				+0.6
3,036,755	-				+0.5
3,036,755	-				-0.9
3,036,755	-				-0.1
3,036,755	-				+0.1
3,036,793	+				-0.0
3,036,793	+				-0.8
3,036,793	+				-0.7
3,036,794	-				-0.4
3,036,794	-				+0.1
3,036,794	-				-0.3
3,036,794	-				+1.0
3,036,794	-				+0.7
3,036,794	-				-0.4
3,036,794	-				-0.2
3,036,810	+				-0.1
3,036,810	+				-0.2
3,036,815	+				-0.1
3,036,816	-				-1.7
3,036,821	-				+0.6
3,036,836	+		DZA65_RS14170	0.12	+1.8
3,036,837	-		DZA65_RS14170	0.12	-0.6
3,036,998	+		DZA65_RS14170	0.35	+1.1
3,036,999	-		DZA65_RS14170	0.35	+0.1
3,037,071	+		DZA65_RS14170	0.45	-0.4
3,037,236	-		DZA65_RS14170	0.68	-0.1
3,037,263	+		DZA65_RS14170	0.72	+0.0
3,037,334	-		DZA65_RS14170	0.82	-0.3
3,037,343	+		DZA65_RS14170	0.83	+0.3
3,037,343	+		DZA65_RS14170	0.83	+0.7
3,037,343	+		DZA65_RS14170	0.83	+0.4
3,037,344	-		DZA65_RS14170	0.83	-0.4
3,037,344	-		DZA65_RS14170	0.83	-0.8
3,037,344	-		DZA65_RS14170	0.83	+0.5
3,037,344	-		DZA65_RS14170	0.83	+0.8
3,037,344	-		DZA65_RS14170	0.83	-0.0
3,037,344	-		DZA65_RS14170	0.83	-1.1
3,037,344	-		DZA65_RS14170	0.83	-1.7
3,037,344	-		DZA65_RS14170	0.83	+0.1
3,037,344	-		DZA65_RS14170	0.83	-0.3
3,037,347	+		DZA65_RS14170	0.84	+0.4
3,037,347	+		DZA65_RS14170	0.84	+0.8
3,037,347	+		DZA65_RS14170	0.84	-0.4
3,037,348	-		DZA65_RS14170	0.84	-0.2
3,037,348	-		DZA65_RS14170	0.84	+0.5
3,037,348	-		DZA65_RS14170	0.84	+0.2
3,037,348	-		DZA65_RS14170	0.84	-1.4
3,037,354	+		DZA65_RS14170	0.85	-0.4
3,037,370	+		DZA65_RS14170	0.87	-0.5
3,037,370	+		DZA65_RS14170	0.87	+1.0
3,037,378	+		DZA65_RS14170	0.88	-0.2
3,037,378	+		DZA65_RS14170	0.88	+0.2
3,037,379	-				-1.4
3,037,397	+				-0.4
3,037,397	+				+1.6
3,037,405	+				-1.0
3,037,424	+				-0.2
3,037,477	-				-0.2
3,037,477	-				+0.9
3,037,514	+				+0.3
3,037,515	-				+0.6
3,037,515	-				-0.1
3,037,516	+				-1.8
3,037,516	+				-1.3
3,037,517	-				+0.7
3,037,526	-				+1.9
3,037,553	+				-0.4
3,037,553	+				-0.5
3,037,554	-				-0.3
3,037,565	+				-0.3
3,037,566	-				-1.2
3,037,566	-				-0.6
3,037,768	+		DZA65_RS14175	0.22	-0.4
3,037,769	-		DZA65_RS14175	0.23	-0.1
3,037,783	+		DZA65_RS14175	0.24	-0.2
3,037,784	-		DZA65_RS14175	0.24	-1.1
3,037,784	-		DZA65_RS14175	0.24	+0.5
3,037,882	+		DZA65_RS14175	0.33	+1.5
3,037,882	+		DZA65_RS14175	0.33	-0.3
3,037,882	+		DZA65_RS14175	0.33	+0.3
3,037,882	+		DZA65_RS14175	0.33	+0.8
3,037,883	-		DZA65_RS14175	0.33	+0.1
3,037,883	-		DZA65_RS14175	0.33	+1.9
3,037,883	-		DZA65_RS14175	0.33	+0.4
3,037,883	-		DZA65_RS14175	0.33	-0.4
3,037,886	+		DZA65_RS14175	0.33	+0.9
3,037,887	-		DZA65_RS14175	0.33	+0.1
3,037,893	+		DZA65_RS14175	0.34	-0.2
3,037,894	-		DZA65_RS14175	0.34	+0.1
3,037,894	-		DZA65_RS14175	0.34	-1.0
3,037,909	+		DZA65_RS14175	0.35	-0.6
3,037,941	+		DZA65_RS14175	0.38	-0.1
3,037,941	+		DZA65_RS14175	0.38	-0.7
3,037,942	-		DZA65_RS14175	0.38	-1.6
3,037,977	+		DZA65_RS14175	0.41	-0.1
3,038,027	+		DZA65_RS14175	0.45	+0.7
3,038,027	+		DZA65_RS14175	0.45	-0.2
3,038,027	+		DZA65_RS14175	0.45	+1.2
3,038,027	+		DZA65_RS14175	0.45	-2.9
3,038,027	+		DZA65_RS14175	0.45	-1.1
3,038,027	+		DZA65_RS14175	0.45	-0.1
3,038,027	+		DZA65_RS14175	0.45	-0.8
3,038,028	-		DZA65_RS14175	0.45	+0.5
3,038,028	-		DZA65_RS14175	0.45	-0.1
3,038,028	-		DZA65_RS14175	0.45	-1.3
3,038,085	+		DZA65_RS14175	0.50	-1.1
3,038,085	+		DZA65_RS14175	0.50	-0.3
3,038,086	-				+1.9
3,038,086	-		DZA65_RS14175	0.51	-0.1
3,038,089	+		DZA65_RS14175	0.51	-0.1
3,038,099	+		DZA65_RS14175	0.52	+0.1
3,038,099	+		DZA65_RS14175	0.52	-0.1
3,038,099	+		DZA65_RS14175	0.52	-0.4
3,038,099	+		DZA65_RS14175	0.52	-1.3
3,038,099	+		DZA65_RS14175	0.52	-0.7
3,038,099	+		DZA65_RS14175	0.52	-0.1
3,038,100	-		DZA65_RS14175	0.52	-0.3
3,038,100	-		DZA65_RS14175	0.52	-0.5
3,038,100	-		DZA65_RS14175	0.52	-0.6
3,038,100	-		DZA65_RS14175	0.52	-2.7
3,038,228	-		DZA65_RS14175	0.63	+0.4
3,038,228	-		DZA65_RS14175	0.63	-0.3
3,038,377	+		DZA65_RS14175	0.76	+0.9
3,038,377	+		DZA65_RS14175	0.76	-0.7
3,038,377	+		DZA65_RS14175	0.76	+0.2
3,038,377	+		DZA65_RS14175	0.76	+0.7
3,038,382	+		DZA65_RS14175	0.77	-0.1
3,038,382	+		DZA65_RS14175	0.77	-1.2
3,038,383	-		DZA65_RS14175	0.77	+0.1
3,038,383	-		DZA65_RS14175	0.77	-1.4
3,038,383	-		DZA65_RS14175	0.77	+1.3
3,038,389	+		DZA65_RS14175	0.77	-1.7
3,038,389	+		DZA65_RS14175	0.77	-1.1
3,038,436	-		DZA65_RS14175	0.81	+0.6
3,038,456	+		DZA65_RS14175	0.83	+0.2
3,038,456	+		DZA65_RS14175	0.83	-0.2
3,038,456	+		DZA65_RS14175	0.83	+0.1
3,038,457	-		DZA65_RS14175	0.83	-0.2
3,038,457	-		DZA65_RS14175	0.83	+0.4
3,038,457	-		DZA65_RS14175	0.83	-0.3
3,038,457	-		DZA65_RS14175	0.83	+0.1