Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13755

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,950,307	-		DZA65_RS13750	0.62	-0.6
2,950,307	-		DZA65_RS13750	0.62	-3.8
2,950,398	+		DZA65_RS13750	0.66	-1.9
2,950,398	+		DZA65_RS13750	0.66	-1.3
2,950,398	+		DZA65_RS13750	0.66	-1.9
2,950,398	+		DZA65_RS13750	0.66	-0.1
2,950,399	-		DZA65_RS13750	0.66	-4.0
2,950,399	-		DZA65_RS13750	0.66	-0.9
2,950,399	-		DZA65_RS13750	0.66	-2.6
2,950,399	-		DZA65_RS13750	0.66	-1.5
2,950,403	-		DZA65_RS13750	0.66	-1.5
2,950,443	+		DZA65_RS13750	0.68	-2.6
2,950,444	-		DZA65_RS13750	0.68	-1.5
2,950,444	-		DZA65_RS13750	0.68	-3.3
2,950,444	-		DZA65_RS13750	0.68	-4.1
2,950,563	+		DZA65_RS13750	0.73	-2.9
2,950,563	+		DZA65_RS13750	0.73	-2.6
2,950,563	+		DZA65_RS13750	0.73	-0.7
2,950,564	-		DZA65_RS13750	0.73	-3.1
2,950,564	-		DZA65_RS13750	0.73	-0.5
2,950,564	-		DZA65_RS13750	0.73	-2.3
2,950,564	-		DZA65_RS13750	0.73	-1.9
2,950,564	-		DZA65_RS13750	0.73	-1.6
2,950,567	+		DZA65_RS13750	0.73	-3.3
2,950,677	+		DZA65_RS13750	0.77	-3.7
2,950,677	+		DZA65_RS13750	0.77	-1.3
2,950,678	-		DZA65_RS13750	0.77	-2.5
2,950,678	-		DZA65_RS13750	0.77	-3.6
2,950,678	-		DZA65_RS13750	0.77	-2.1
2,950,678	-		DZA65_RS13750	0.77	-2.1
2,950,678	-		DZA65_RS13750	0.77	-2.4
2,950,707	-				-0.1
2,950,765	+		DZA65_RS13750	0.80	-3.1
2,950,765	+		DZA65_RS13750	0.80	-2.6
2,950,765	+		DZA65_RS13750	0.80	-0.5
2,950,774	+		DZA65_RS13750	0.81	-1.7
2,950,774	+		DZA65_RS13750	0.81	-0.9
2,950,774	+		DZA65_RS13750	0.81	-1.5
2,950,775	-		DZA65_RS13750	0.81	-0.9
2,950,775	-		DZA65_RS13750	0.81	-2.1
2,950,777	-		DZA65_RS13750	0.81	-3.7
2,950,814	+		DZA65_RS13750	0.82	-2.9
2,950,815	-		DZA65_RS13750	0.82	-4.6
2,950,824	+		DZA65_RS13750	0.83	-2.8
2,950,825	-		DZA65_RS13750	0.83	-2.1
2,950,842	-		DZA65_RS13750	0.83	-1.6
2,950,842	-		DZA65_RS13750	0.83	-1.7
2,950,842	-		DZA65_RS13750	0.83	-3.9
2,951,105	-				-2.8
2,951,122	+				-1.7
2,951,122	+				-3.7
2,951,123	-				-1.5
2,951,123	-				+0.6
2,951,123	-				-3.0
2,951,123	-				-1.0
2,951,125	+				-3.7
2,951,235	+				-2.7
2,951,235	+				-1.9
2,951,236	-				-2.7
2,951,245	+				-1.9
2,951,257	+				-2.2
2,951,258	-				-2.1
2,951,258	-				-1.9
2,951,258	-				-3.5
2,951,465	+		DZA65_RS13755	0.13	-2.3
2,951,465	+		DZA65_RS13755	0.13	-3.0
2,951,547	-		DZA65_RS13755	0.19	-1.7
2,951,590	+		DZA65_RS13755	0.21	-2.7
2,951,590	+		DZA65_RS13755	0.21	-2.7
2,951,590	+		DZA65_RS13755	0.21	-3.0
2,951,591	-		DZA65_RS13755	0.21	-1.1
2,951,591	-		DZA65_RS13755	0.21	-1.8
2,951,591	-		DZA65_RS13755	0.21	-2.1
2,951,591	-		DZA65_RS13755	0.21	-2.3
2,951,748	+		DZA65_RS13755	0.31	+0.5
2,951,748	+		DZA65_RS13755	0.31	-1.9
2,951,749	-		DZA65_RS13755	0.31	-3.3
2,951,749	-		DZA65_RS13755	0.31	-2.7
2,951,886	-		DZA65_RS13755	0.40	-2.7
2,951,887	+		DZA65_RS13755	0.40	-1.1
2,951,887	+		DZA65_RS13755	0.40	-2.4
2,951,957	+		DZA65_RS13755	0.45	-2.1
2,951,958	-		DZA65_RS13755	0.45	-0.4
2,951,958	-		DZA65_RS13755	0.45	-2.1
2,951,958	-		DZA65_RS13755	0.45	-3.6
2,951,958	-		DZA65_RS13755	0.45	-3.7
2,951,961	+		DZA65_RS13755	0.45	-0.1
2,951,961	+		DZA65_RS13755	0.45	-2.6
2,951,962	-		DZA65_RS13755	0.45	+0.3
2,951,962	-		DZA65_RS13755	0.45	-2.8
2,951,962	-		DZA65_RS13755	0.45	-2.6
2,952,192	-		DZA65_RS13755	0.60	-2.4
2,952,192	-		DZA65_RS13755	0.60	-2.0
2,952,295	+		DZA65_RS13755	0.66	-1.9
2,952,295	+		DZA65_RS13755	0.66	-2.0
2,952,295	+		DZA65_RS13755	0.66	-3.1
2,952,295	+		DZA65_RS13755	0.66	-2.3
2,952,295	+		DZA65_RS13755	0.66	-3.1
2,952,296	-		DZA65_RS13755	0.66	-1.9
2,952,296	-		DZA65_RS13755	0.66	-1.9
2,952,296	-		DZA65_RS13755	0.66	-3.7
2,952,296	-		DZA65_RS13755	0.66	-3.0
2,952,362	+		DZA65_RS13755	0.70	+0.5
2,952,469	+		DZA65_RS13755	0.77	-2.5
2,952,530	-		DZA65_RS13755	0.81	-3.7
2,952,530	-		DZA65_RS13755	0.81	-3.4
2,952,530	-		DZA65_RS13755	0.81	-2.7
2,952,617	-		DZA65_RS13755	0.87	+0.8
2,952,738	+				-2.7
2,952,739	-				-0.3
2,952,815	+				-1.5
2,952,836	+				-5.0
2,952,836	+				-2.7
2,952,836	+				-2.5
2,952,837	-				-1.5
2,952,837	-				-1.7
2,952,837	-				-2.7
2,952,837	-				-1.6
2,952,837	-				-0.5
2,952,837	-				-3.0
2,952,865	-				-1.3
2,952,868	-				-1.7
2,952,880	-				-0.7
2,952,880	-				-1.1
2,952,919	+				-1.8
2,952,919	+				+0.3
2,952,919	+				-0.9
2,952,919	+				-0.7
2,952,919	+				-0.1
2,952,920	-				-0.9
2,952,920	-				+1.0
2,952,931	+				-0.4
2,952,950	+				-0.5
2,952,950	+				+0.3
2,952,951	-				-0.9
2,953,010	+				-0.1
2,953,011	-				+0.1
2,953,062	+				+0.0
2,953,092	+				+2.2
2,953,092	+				-1.1
2,953,093	-				-1.0
2,953,093	-				-1.0
2,953,105	-				+0.9
2,953,166	+				-0.5
2,953,166	+				-0.3
2,953,182	+				+0.8
2,953,183	-				+0.2
2,953,183	-				+0.3
2,953,194	+				-1.7
2,953,194	+				-0.5
2,953,195	-				+0.2
2,953,220	+				+0.5
2,953,220	+				+0.3
2,953,220	+				+0.4
2,953,221	-				+0.5
2,953,221	-				-0.4
2,953,221	-				-0.7
2,953,221	-				+0.6
2,953,221	-				-0.5
2,953,222	+				+0.1
2,953,222	+				-0.9
2,953,223	-				-1.3
2,953,223	-				+1.1
2,953,223	-				+0.8
2,953,223	-				+0.4
2,953,474	-		DZA65_RS13760	0.55	+0.2
2,953,485	-		DZA65_RS13760	0.57	+0.3
2,953,485	-		DZA65_RS13760	0.57	+0.1
2,953,529	-		DZA65_RS13760	0.67	+1.1
2,953,529	-		DZA65_RS13760	0.67	-0.1
2,953,547	+		DZA65_RS13760	0.71	+0.1
2,953,548	-		DZA65_RS13760	0.72	+0.9
2,953,575	+		DZA65_RS13760	0.78	-0.1
2,953,576	-		DZA65_RS13760	0.78	-1.1
2,953,725	+				+0.1
2,953,725	+				+0.2
2,953,822	-				+0.2