Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10860

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,297,603	+				-0.0
2,297,604	-				-0.5
2,297,604	-				+0.1
2,297,634	-				-0.2
2,297,635	+				-0.1
2,297,640	+				+0.9
2,297,640	+				+0.5
2,297,665	+				+1.3
2,297,666	-				-0.9
2,297,682	-				-0.4
2,297,718	+				+0.8
2,297,776	+				+0.4
2,297,776	+				-1.2
2,297,776	+				-0.1
2,297,777	-				-0.8
2,297,796	+				+0.3
2,297,821	-				-1.4
2,297,838	-				+0.8
2,297,841	+				+0.2
2,297,842	-				-0.1
2,297,910	+				-1.1
2,297,985	-				-0.6
2,298,027	-				+0.6
2,298,027	-				-1.1
2,298,042	+				-0.1
2,298,099	+				-0.3
2,298,100	-				+0.6
2,298,189	+				+0.2
2,298,233	+				-0.0
2,298,233	+				+0.4
2,298,234	-				+0.1
2,298,234	-				+1.1
2,298,234	-				+0.5
2,298,234	-				-0.7
2,298,234	-				+0.4
2,298,234	-				+0.2
2,298,234	-				-1.0
2,298,254	+				-0.0
2,298,254	+				+1.2
2,298,255	-				-0.7
2,298,449	+				-0.8
2,298,449	+				-0.8
2,298,449	+				-0.8
2,298,458	+				-0.8
2,298,460	+				-0.4
2,298,460	+				+1.3
2,298,460	+				-0.2
2,298,460	+				-0.7
2,298,460	+				-0.8
2,298,460	+				+0.3
2,298,460	+				+0.2
2,298,460	+				-0.6
2,298,460	+				+0.4
2,298,460	+				-0.0
2,298,460	+				+0.8
2,298,524	+				+0.3
2,298,525	-				+1.0
2,298,525	-				-0.8
2,298,525	-				+1.0
2,298,525	-				+0.4
2,298,527	+				-1.6
2,298,527	+				-1.2
2,298,527	+				-0.1
2,298,527	+				-0.5
2,298,527	+				-0.2
2,298,528	-				-0.7
2,298,528	-				-0.1
2,298,528	-				-0.5
2,298,528	-				+0.5
2,298,528	-				+0.2
2,298,528	-				-0.2
2,298,531	+				+0.9
2,298,532	-				-0.8
2,298,540	+				-0.8
2,298,541	-				-2.3
2,298,541	-				+0.4
2,298,581	+				-1.0
2,298,582	-				-0.6
2,298,582	-				+0.5
2,298,582	-				+0.5
2,298,586	-				-1.0
2,298,586	-				-1.0
2,298,586	-				-1.8
2,298,586	-				-0.1
2,298,590	+				+0.5
2,298,591	-				-0.0
2,298,636	+				-1.0
2,298,637	-				-1.4
2,298,637	-				-0.5
2,298,639	+				-0.9
2,298,639	+				-1.2
2,298,723	+				-1.6
2,298,724	-				+0.3
2,298,756	+		DZA65_RS10860	0.10	+0.2
2,298,756	+		DZA65_RS10860	0.10	-1.0
2,298,757	-		DZA65_RS10860	0.10	-0.4
2,298,757	-		DZA65_RS10860	0.10	-0.4
2,298,761	+		DZA65_RS10860	0.11	-0.5
2,298,761	+		DZA65_RS10860	0.11	-0.4
2,298,762	-		DZA65_RS10860	0.11	+0.4
2,298,762	-		DZA65_RS10860	0.11	-2.2
2,298,762	-		DZA65_RS10860	0.11	-0.9
2,298,762	-		DZA65_RS10860	0.11	-1.2
2,298,762	-		DZA65_RS10860	0.11	-0.4
2,298,865	-		DZA65_RS10860	0.17	+0.3
2,298,867	+		DZA65_RS10860	0.17	-0.6
2,298,867	+		DZA65_RS10860	0.17	-0.0
2,298,867	+		DZA65_RS10860	0.17	-1.4
2,298,868	-		DZA65_RS10860	0.17	-0.7
2,298,868	-		DZA65_RS10860	0.17	+0.8
2,298,868	-		DZA65_RS10860	0.17	-0.4
2,298,868	-		DZA65_RS10860	0.17	+0.1
2,298,868	-		DZA65_RS10860	0.17	-0.4
2,298,901	-		DZA65_RS10860	0.19	-0.7
2,298,901	-		DZA65_RS10860	0.19	-0.4
2,298,952	+		DZA65_RS10860	0.22	+1.0
2,298,952	+		DZA65_RS10860	0.22	+0.1
2,298,953	-		DZA65_RS10860	0.22	-0.1
2,298,954	+		DZA65_RS10860	0.22	-0.4
2,298,954	+		DZA65_RS10860	0.22	-0.3
2,298,954	+		DZA65_RS10860	0.22	-1.8
2,298,954	+		DZA65_RS10860	0.22	-1.7
2,298,954	+		DZA65_RS10860	0.22	+0.3
2,298,955	-		DZA65_RS10860	0.22	-0.4
2,298,955	-		DZA65_RS10860	0.22	-0.4
2,298,955	-		DZA65_RS10860	0.22	-1.0
2,298,955	-		DZA65_RS10860	0.22	-0.6
2,298,966	+		DZA65_RS10860	0.23	-0.0
2,298,967	-		DZA65_RS10860	0.23	-1.6
2,298,967	-		DZA65_RS10860	0.23	+1.1
2,298,967	-		DZA65_RS10860	0.23	+1.2
2,298,967	-		DZA65_RS10860	0.23	+0.2
2,298,995	-		DZA65_RS10860	0.25	-1.0
2,299,003	+		DZA65_RS10860	0.25	-0.0
2,299,003	+		DZA65_RS10860	0.25	-0.5
2,299,003	+		DZA65_RS10860	0.25	+0.5
2,299,004	-		DZA65_RS10860	0.25	-0.2
2,299,004	-		DZA65_RS10860	0.25	-0.8
2,299,130	-		DZA65_RS10860	0.33	+0.2
2,299,136	-		DZA65_RS10860	0.33	-2.0
2,299,240	+		DZA65_RS10860	0.40	-0.8
2,299,240	+		DZA65_RS10860	0.40	-2.9
2,299,240	+		DZA65_RS10860	0.40	-0.9
2,299,240	+		DZA65_RS10860	0.40	+0.5
2,299,240	+		DZA65_RS10860	0.40	-0.1
2,299,240	+		DZA65_RS10860	0.40	-0.2
2,299,241	-		DZA65_RS10860	0.40	+0.8
2,299,241	-		DZA65_RS10860	0.40	-2.4
2,299,241	-		DZA65_RS10860	0.40	-0.4
2,299,241	-		DZA65_RS10860	0.40	-1.0
2,299,241	-		DZA65_RS10860	0.40	-0.6
2,299,241	-		DZA65_RS10860	0.40	+0.8
2,299,242	+		DZA65_RS10860	0.40	-1.0
2,299,242	+		DZA65_RS10860	0.40	-0.2
2,299,242	+		DZA65_RS10860	0.40	+1.2
2,299,243	-		DZA65_RS10860	0.40	+0.2
2,299,297	+		DZA65_RS10860	0.43	-1.8
2,299,323	+		DZA65_RS10860	0.45	-0.2
2,299,324	-		DZA65_RS10860	0.45	-0.1
2,299,324	-		DZA65_RS10860	0.45	+0.1
2,299,326	+		DZA65_RS10860	0.45	+0.5
2,299,326	+		DZA65_RS10860	0.45	-0.1
2,299,327	-		DZA65_RS10860	0.45	+0.4
2,299,327	-		DZA65_RS10860	0.45	-2.8
2,299,327	-		DZA65_RS10860	0.45	-0.1
2,299,336	+		DZA65_RS10860	0.46	-0.7
2,299,336	+		DZA65_RS10860	0.46	-0.8
2,299,336	+		DZA65_RS10860	0.46	-1.6
2,299,337	-		DZA65_RS10860	0.46	-1.8
2,299,337	-				+1.2
2,299,337	-		DZA65_RS10860	0.46	-0.4
2,299,402	+		DZA65_RS10860	0.50	-1.1
2,299,402	+		DZA65_RS10860	0.50	-0.9
2,299,402	+		DZA65_RS10860	0.50	-0.1
2,299,402	+		DZA65_RS10860	0.50	+0.6
2,299,402	+		DZA65_RS10860	0.50	+0.8
2,299,402	+		DZA65_RS10860	0.50	+0.4
2,299,403	-		DZA65_RS10860	0.50	-0.3
2,299,403	-		DZA65_RS10860	0.50	+1.6
2,299,403	-		DZA65_RS10860	0.50	-0.6
2,299,403	-		DZA65_RS10860	0.50	-0.0
2,299,403	-		DZA65_RS10860	0.50	-0.2
2,299,403	-		DZA65_RS10860	0.50	+0.4
2,299,403	-		DZA65_RS10860	0.50	-1.4
2,299,403	-		DZA65_RS10860	0.50	-1.0
2,299,403	-		DZA65_RS10860	0.50	-0.1
2,299,403	-		DZA65_RS10860	0.50	-1.9
2,299,403	-		DZA65_RS10860	0.50	+0.3
2,299,403	-		DZA65_RS10860	0.50	-1.7
2,299,475	-		DZA65_RS10860	0.54	+0.0
2,299,482	+		DZA65_RS10860	0.55	+0.0
2,299,482	+		DZA65_RS10860	0.55	-0.4
2,299,483	-		DZA65_RS10860	0.55	-0.0
2,299,483	-		DZA65_RS10860	0.55	-0.8
2,299,486	+		DZA65_RS10860	0.55	-0.2
2,299,486	+		DZA65_RS10860	0.55	+0.8
2,299,486	+		DZA65_RS10860	0.55	-0.4
2,299,486	+		DZA65_RS10860	0.55	-1.2
2,299,486	+		DZA65_RS10860	0.55	+0.8
2,299,487	-		DZA65_RS10860	0.55	-1.6
2,299,489	+		DZA65_RS10860	0.55	-2.4
2,299,489	+		DZA65_RS10860	0.55	-0.7
2,299,489	+		DZA65_RS10860	0.55	-1.1
2,299,489	+		DZA65_RS10860	0.55	-0.4
2,299,489	+		DZA65_RS10860	0.55	-0.5
2,299,489	+		DZA65_RS10860	0.55	+0.5
2,299,490	-		DZA65_RS10860	0.55	-0.4
2,299,490	-		DZA65_RS10860	0.55	+0.6
2,299,490	-		DZA65_RS10860	0.55	+0.1
2,299,490	-		DZA65_RS10860	0.55	+0.4
2,299,492	+		DZA65_RS10860	0.55	-1.4
2,299,492	+		DZA65_RS10860	0.55	-0.4
2,299,492	+		DZA65_RS10860	0.55	-0.4
2,299,492	+		DZA65_RS10860	0.55	-2.8
2,299,493	-		DZA65_RS10860	0.55	+0.8
2,299,569	+		DZA65_RS10860	0.60	-0.8
2,299,631	-		DZA65_RS10860	0.64	-0.5
2,299,631	-		DZA65_RS10860	0.64	-0.2
2,299,769	-		DZA65_RS10860	0.72	-1.0
2,299,769	-		DZA65_RS10860	0.72	-0.6
2,299,769	-		DZA65_RS10860	0.72	-1.0
2,299,769	-		DZA65_RS10860	0.72	-0.2
2,299,816	-		DZA65_RS10860	0.75	-1.2
2,299,816	-		DZA65_RS10860	0.75	-1.6
2,299,933	+		DZA65_RS10860	0.82	-1.2
2,299,933	+		DZA65_RS10860	0.82	+0.0
2,299,933	+		DZA65_RS10860	0.82	+0.2
2,299,934	-		DZA65_RS10860	0.82	+1.0
2,299,934	-		DZA65_RS10860	0.82	-2.2
2,299,936	-		DZA65_RS10860	0.82	-1.4
2,299,936	-		DZA65_RS10860	0.82	-0.6
2,300,064	+		DZA65_RS10860	0.90	+0.1
2,300,072	-				+0.1
2,300,072	-				-1.8
2,300,122	+				-0.8
2,300,123	-				-0.7
2,300,123	-				+2.3
2,300,123	-				-2.6
2,300,125	+				-1.9
2,300,125	+				-0.8
2,300,125	+				-1.0
2,300,125	+				-0.8
2,300,125	+				+0.8
2,300,125	+				-1.6
2,300,126	-				+0.1
2,300,126	-				+0.2
2,300,126	-				-0.6
2,300,126	-				-0.1
2,300,126	-				-0.5
2,300,128	+				+0.3
2,300,129	-				+1.0
2,300,129	-				-0.8
2,300,155	+				+0.0
2,300,169	+				-0.5
2,300,169	+				-1.6
2,300,175	+				+0.8
2,300,215	-				+0.1
2,300,308	+				-1.5
2,300,308	+				+1.8
2,300,309	-				-2.2
2,300,310	+				-0.2
2,300,311	-				-1.4
2,300,314	+				-0.8
2,300,315	-				-0.5
2,300,315	-				-1.3
2,300,315	-				+0.8
2,300,385	-				+0.5
2,300,427	-		DZA65_RS10865	0.11	+1.5
2,300,478	+		DZA65_RS10865	0.17	-0.0
2,300,479	-		DZA65_RS10865	0.17	-0.3
2,300,479	-		DZA65_RS10865	0.17	-0.5
2,300,508	+		DZA65_RS10865	0.20	-1.4
2,300,509	-		DZA65_RS10865	0.20	-1.1
2,300,513	+		DZA65_RS10865	0.21	+1.2
2,300,513	+		DZA65_RS10865	0.21	-2.4
2,300,513	+		DZA65_RS10865	0.21	+0.5
2,300,513	+		DZA65_RS10865	0.21	-1.1
2,300,514	-		DZA65_RS10865	0.21	+0.2
2,300,514	-		DZA65_RS10865	0.21	-0.2
2,300,514	-		DZA65_RS10865	0.21	-0.8
2,300,514	-		DZA65_RS10865	0.21	-0.3
2,300,517	+		DZA65_RS10865	0.21	-0.8
2,300,518	-		DZA65_RS10865	0.21	-0.1
2,300,518	-		DZA65_RS10865	0.21	-1.8
2,300,518	-		DZA65_RS10865	0.21	+1.0
2,300,518	-		DZA65_RS10865	0.21	-0.1
2,300,518	-		DZA65_RS10865	0.21	+0.0
2,300,518	-		DZA65_RS10865	0.21	-0.8
2,300,518	-		DZA65_RS10865	0.21	-0.2
2,300,563	-		DZA65_RS10865	0.26	+0.8
2,300,563	-		DZA65_RS10865	0.26	+0.3
2,300,616	-		DZA65_RS10865	0.32	+0.1
2,300,696	+		DZA65_RS10865	0.41	-0.1
2,300,697	-		DZA65_RS10865	0.41	+1.0
2,300,706	+		DZA65_RS10865	0.42	-0.2
2,300,706	+		DZA65_RS10865	0.42	-1.2
2,300,713	+		DZA65_RS10865	0.42	-0.7
2,300,838	+		DZA65_RS10865	0.56	-0.4
2,300,874	+		DZA65_RS10865	0.60	+0.8
2,300,874	+		DZA65_RS10865	0.60	-0.6
2,300,874	+		DZA65_RS10865	0.60	+0.3
2,300,874	+		DZA65_RS10865	0.60	-0.3
2,300,874	+		DZA65_RS10865	0.60	-1.1
2,300,874	+		DZA65_RS10865	0.60	+0.1
2,300,874	+		DZA65_RS10865	0.60	-1.0
2,300,874	+		DZA65_RS10865	0.60	+0.3
2,300,875	-		DZA65_RS10865	0.60	-1.2
2,300,875	-		DZA65_RS10865	0.60	-0.9
2,300,875	-				-0.8
2,300,875	-		DZA65_RS10865	0.60	+0.6
2,300,875	-		DZA65_RS10865	0.60	-0.6
2,300,898	-		DZA65_RS10865	0.63	+0.1
2,300,921	-		DZA65_RS10865	0.65	-0.2
2,300,921	-		DZA65_RS10865	0.65	-0.4
2,300,921	-		DZA65_RS10865	0.65	+0.2
2,300,978	+		DZA65_RS10865	0.71	-0.7
2,301,024	+		DZA65_RS10865	0.76	-0.4
2,301,024	+		DZA65_RS10865	0.76	+1.4
2,301,024	+		DZA65_RS10865	0.76	-0.1
2,301,025	-		DZA65_RS10865	0.76	+0.3
2,301,025	-		DZA65_RS10865	0.76	-0.0
2,301,025	-		DZA65_RS10865	0.76	-0.8
2,301,025	-		DZA65_RS10865	0.76	+2.9
2,301,050	+		DZA65_RS10865	0.79	-0.6
2,301,051	-		DZA65_RS10865	0.79	-1.0
2,301,062	+		DZA65_RS10865	0.80	+1.3
2,301,063	-		DZA65_RS10865	0.80	+0.3
2,301,136	-		DZA65_RS10865	0.88	-1.7
2,301,136	-		DZA65_RS10865	0.88	+1.3
2,301,210	+				+0.0
2,301,210	+				-0.0
2,301,211	-				+0.2