Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09075

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,911,258	+		DZA65_RS09070	0.52	-0.1
1,911,352	+		DZA65_RS09070	0.61	+0.2
1,911,352	+		DZA65_RS09070	0.61	-1.2
1,911,352	+		DZA65_RS09070	0.61	-1.2
1,911,374	-		DZA65_RS09070	0.63	+0.2
1,911,634	+		DZA65_RS09070	0.89	-0.2
1,911,635	-		DZA65_RS09070	0.89	-0.5
1,911,635	-		DZA65_RS09070	0.89	-0.3
1,911,635	-		DZA65_RS09070	0.89	-0.7
1,911,667	+				+0.8
1,911,667	+				-0.0
1,911,667	+				-0.7
1,911,668	-				-0.1
1,911,723	+				+0.2
1,911,743	+				-0.9
1,911,743	+				+0.3
1,911,743	+				-0.0
1,911,743	+				-0.8
1,911,743	+				-1.4
1,911,744	-				-0.4
1,911,744	-				-0.9
1,911,744	-				-0.1
1,911,744	-				+0.3
1,911,744	-				-2.3
1,911,770	+				+0.3
1,911,771	-				-0.9
1,911,771	-				-1.7
1,911,820	+				+0.1
1,911,820	+				-1.6
1,911,820	+				-0.9
1,911,820	+				+0.1
1,911,821	-				+0.6
1,911,821	-				+0.3
1,911,821	-				-0.8
1,911,821	-				-0.0
1,911,825	+				-0.1
1,911,825	+				+1.1
1,911,826	-				-0.4
1,911,831	+				-0.6
1,911,832	-				+0.2
1,911,832	-				-3.1
1,911,987	+				+0.1
1,911,987	+				+0.8
1,911,988	-				+0.6
1,911,988	-				+0.2
1,912,035	+				+1.2
1,912,060	+				-0.6
1,912,060	+				-0.1
1,912,061	-				-0.5
1,912,061	-				+0.3
1,912,061	-				+0.8
1,912,061	-				-1.5
1,912,061	-				+0.8
1,912,061	-				+0.1
1,912,061	-				-0.2
1,912,103	-				-0.2
1,912,131	+				+0.1
1,912,191	+				-0.4
1,912,192	-				+0.3
1,912,192	-				-1.3
1,912,225	-				-0.9
1,912,292	+				-0.2
1,912,464	-		DZA65_RS09075	0.20	+0.5
1,912,483	+		DZA65_RS09075	0.21	-0.8
1,912,483	+		DZA65_RS09075	0.21	-0.7
1,912,484	-		DZA65_RS09075	0.21	-1.7
1,912,484	-		DZA65_RS09075	0.21	-0.1
1,912,492	+		DZA65_RS09075	0.22	-0.4
1,912,492	+		DZA65_RS09075	0.22	-0.9
1,912,492	+		DZA65_RS09075	0.22	-0.9
1,912,493	-		DZA65_RS09075	0.22	+0.8
1,912,493	-		DZA65_RS09075	0.22	-0.5
1,912,493	-		DZA65_RS09075	0.22	-1.0
1,912,493	-		DZA65_RS09075	0.22	-1.4
1,912,536	+		DZA65_RS09075	0.25	-1.2
1,912,573	-		DZA65_RS09075	0.28	-1.4
1,912,573	-		DZA65_RS09075	0.28	-0.7
1,912,652	+		DZA65_RS09075	0.34	-0.8
1,912,653	-		DZA65_RS09075	0.34	-0.9
1,912,671	+		DZA65_RS09075	0.35	-0.5
1,912,671	+		DZA65_RS09075	0.35	+0.4
1,912,672	-		DZA65_RS09075	0.35	-0.2
1,912,672	-		DZA65_RS09075	0.35	-0.9
1,912,672	-		DZA65_RS09075	0.35	-0.6
1,912,833	+		DZA65_RS09075	0.47	-1.2
1,912,833	+		DZA65_RS09075	0.47	-0.3
1,912,833	+		DZA65_RS09075	0.47	-0.5
1,912,833	+		DZA65_RS09075	0.47	-0.0
1,912,834	-		DZA65_RS09075	0.47	+0.4
1,912,834	-		DZA65_RS09075	0.47	-0.7
1,912,834	-		DZA65_RS09075	0.47	-0.8
1,912,834	-		DZA65_RS09075	0.47	-0.1
1,912,867	+		DZA65_RS09075	0.50	-0.8
1,912,867	+		DZA65_RS09075	0.50	+0.1
1,912,867	+				-2.0
1,912,867	+		DZA65_RS09075	0.50	-0.5
1,912,867	+		DZA65_RS09075	0.50	-0.5
1,912,867	+		DZA65_RS09075	0.50	-0.5
1,912,867	+		DZA65_RS09075	0.50	-0.2
1,912,867	+		DZA65_RS09075	0.50	-1.5
1,912,868	-		DZA65_RS09075	0.50	-0.4
1,912,868	-		DZA65_RS09075	0.50	-2.8
1,912,868	-		DZA65_RS09075	0.50	-0.4
1,912,868	-		DZA65_RS09075	0.50	-0.2
1,912,915	-		DZA65_RS09075	0.53	+1.7
1,913,043	+		DZA65_RS09075	0.63	+0.6
1,913,149	+		DZA65_RS09075	0.70	+0.8
1,913,149	+		DZA65_RS09075	0.70	-1.2
1,913,149	+		DZA65_RS09075	0.70	-0.9
1,913,149	+		DZA65_RS09075	0.70	-0.4
1,913,149	+		DZA65_RS09075	0.70	-1.1
1,913,149	+		DZA65_RS09075	0.70	+0.1
1,913,149	+		DZA65_RS09075	0.70	-0.4
1,913,149	+		DZA65_RS09075	0.70	-0.2
1,913,150	-		DZA65_RS09075	0.70	-0.2
1,913,150	-		DZA65_RS09075	0.70	-0.2
1,913,150	-		DZA65_RS09075	0.70	+0.3
1,913,150	-		DZA65_RS09075	0.70	-1.0
1,913,150	-		DZA65_RS09075	0.70	-0.4
1,913,150	-		DZA65_RS09075	0.70	-0.5
1,913,150	-		DZA65_RS09075	0.70	-0.8
1,913,150	-		DZA65_RS09075	0.70	-1.0
1,913,150	-		DZA65_RS09075	0.70	-0.2
1,913,176	+		DZA65_RS09075	0.72	-0.1
1,913,176	+		DZA65_RS09075	0.72	-0.4
1,913,176	+		DZA65_RS09075	0.72	+1.0
1,913,176	+		DZA65_RS09075	0.72	+1.1
1,913,177	-		DZA65_RS09075	0.72	+0.1
1,913,177	-		DZA65_RS09075	0.72	-1.7
1,913,177	-		DZA65_RS09075	0.72	+1.1
1,913,177	-		DZA65_RS09075	0.72	-1.2
1,913,177	-		DZA65_RS09075	0.72	-2.0
1,913,177	-		DZA65_RS09075	0.72	+1.3
1,913,177	-		DZA65_RS09075	0.72	-1.0
1,913,177	-		DZA65_RS09075	0.72	-0.6
1,913,214	+		DZA65_RS09075	0.75	-1.4
1,913,556	+				+0.5
1,913,556	+				-1.1
1,913,557	-				+0.1
1,913,557	-				+0.3
1,913,557	-				+0.7
1,913,557	-				-0.5
1,913,558	+				+0.7
1,913,662	-		DZA65_RS09080	0.12	-1.7
1,913,671	-		DZA65_RS09080	0.13	+0.2
1,913,683	+		DZA65_RS09080	0.14	+0.2
1,913,683	+		DZA65_RS09080	0.14	-0.2
1,913,683	+		DZA65_RS09080	0.14	+0.6
1,913,713	+		DZA65_RS09080	0.18	+0.4
1,913,713	+		DZA65_RS09080	0.18	+2.4
1,913,713	+		DZA65_RS09080	0.18	-1.7
1,913,713	+		DZA65_RS09080	0.18	-1.0
1,913,713	+		DZA65_RS09080	0.18	-1.0
1,913,714	-		DZA65_RS09080	0.18	-1.4
1,913,714	-		DZA65_RS09080	0.18	+0.2
1,913,714	-		DZA65_RS09080	0.18	-0.1
1,913,714	-		DZA65_RS09080	0.18	+0.1
1,913,714	-		DZA65_RS09080	0.18	+0.5
1,913,714	-		DZA65_RS09080	0.18	+0.0
1,913,714	-		DZA65_RS09080	0.18	+0.5
1,913,714	-		DZA65_RS09080	0.18	-1.2
1,913,714	-		DZA65_RS09080	0.18	-0.1
1,913,714	-		DZA65_RS09080	0.18	+0.4
1,913,714	-		DZA65_RS09080	0.18	-1.8
1,913,718	+		DZA65_RS09080	0.18	-0.4
1,913,718	+		DZA65_RS09080	0.18	+0.5
1,913,718	+		DZA65_RS09080	0.18	+0.8
1,913,719	-		DZA65_RS09080	0.18	-0.6
1,913,760	+		DZA65_RS09080	0.23	-1.2
1,913,760	+		DZA65_RS09080	0.23	+0.4
1,913,761	-		DZA65_RS09080	0.23	-2.4
1,913,761	-		DZA65_RS09080	0.23	-0.6
1,913,761	-		DZA65_RS09080	0.23	-0.6
1,913,799	+		DZA65_RS09080	0.27	-0.6
1,913,799	+		DZA65_RS09080	0.27	-0.1
1,913,799	+		DZA65_RS09080	0.27	-0.2
1,913,799	+		DZA65_RS09080	0.27	-0.5
1,913,799	+		DZA65_RS09080	0.27	-0.4
1,913,799	+		DZA65_RS09080	0.27	+0.5
1,913,799	+		DZA65_RS09080	0.27	-0.0
1,913,799	+		DZA65_RS09080	0.27	-0.1
1,913,799	+		DZA65_RS09080	0.27	-0.7
1,913,800	-		DZA65_RS09080	0.27	-0.8
1,913,800	-		DZA65_RS09080	0.27	-0.2
1,913,800	-		DZA65_RS09080	0.27	+0.0
1,913,800	-		DZA65_RS09080	0.27	-0.9
1,913,800	-		DZA65_RS09080	0.27	-0.9
1,913,800	-		DZA65_RS09080	0.27	-0.8
1,913,800	-		DZA65_RS09080	0.27	+0.3
1,913,800	-		DZA65_RS09080	0.27	-0.1
1,913,817	+		DZA65_RS09080	0.29	-1.5
1,913,889	+		DZA65_RS09080	0.37	-0.0
1,913,889	+		DZA65_RS09080	0.37	-0.4
1,913,889	+		DZA65_RS09080	0.37	-0.9
1,913,889	+		DZA65_RS09080	0.37	-0.4
1,913,889	+		DZA65_RS09080	0.37	-0.4
1,913,889	+		DZA65_RS09080	0.37	+0.8
1,913,889	+		DZA65_RS09080	0.37	-0.6
1,913,889	+		DZA65_RS09080	0.37	-1.1
1,913,889	+		DZA65_RS09080	0.37	+0.6
1,913,889	+		DZA65_RS09080	0.37	-0.2
1,913,890	-		DZA65_RS09080	0.37	-1.5
1,913,890	-		DZA65_RS09080	0.37	+0.8
1,913,890	-		DZA65_RS09080	0.37	+0.4
1,913,890	-		DZA65_RS09080	0.37	-0.5
1,913,890	-		DZA65_RS09080	0.37	+1.0
1,913,890	-		DZA65_RS09080	0.37	-0.0
1,913,890	-		DZA65_RS09080	0.37	-0.8
1,913,892	-		DZA65_RS09080	0.38	-0.5
1,913,892	-		DZA65_RS09080	0.38	+0.0
1,913,896	+		DZA65_RS09080	0.38	-0.5
1,913,896	+		DZA65_RS09080	0.38	-0.4
1,913,897	-		DZA65_RS09080	0.38	-0.4
1,913,897	-		DZA65_RS09080	0.38	+0.3
1,913,897	-		DZA65_RS09080	0.38	-1.2
1,913,897	-		DZA65_RS09080	0.38	+0.8
1,913,897	-		DZA65_RS09080	0.38	-1.8
1,913,976	+		DZA65_RS09080	0.47	+0.2
1,913,977	-		DZA65_RS09080	0.47	+0.8
1,914,210	+		DZA65_RS09080	0.73	+0.0
1,914,210	+		DZA65_RS09080	0.73	+0.6
1,914,210	+		DZA65_RS09080	0.73	-0.8
1,914,210	+		DZA65_RS09080	0.73	-0.5
1,914,210	+		DZA65_RS09080	0.73	-0.2
1,914,210	+		DZA65_RS09080	0.73	+0.1
1,914,211	-				+1.8
1,914,211	-		DZA65_RS09080	0.73	-1.5
1,914,211	-		DZA65_RS09080	0.73	-1.8
1,914,226	+		DZA65_RS09080	0.75	-0.8
1,914,226	+		DZA65_RS09080	0.75	-0.1
1,914,256	+		DZA65_RS09080	0.78	-0.8
1,914,256	+		DZA65_RS09080	0.78	-0.3
1,914,256	+		DZA65_RS09080	0.78	-0.1
1,914,256	+		DZA65_RS09080	0.78	-0.4
1,914,257	-		DZA65_RS09080	0.78	+0.8
1,914,257	-		DZA65_RS09080	0.78	-1.0
1,914,257	-		DZA65_RS09080	0.78	+0.2
1,914,386	+				-0.2
1,914,386	+				+0.4
1,914,435	+				-0.1
1,914,436	-				-1.6
1,914,436	-				-0.3
1,914,436	-				-0.1
1,914,445	+				-0.2
1,914,515	+				-0.9
1,914,515	+				-0.7
1,914,515	+				-0.3
1,914,516	-				-1.3
1,914,516	-				-0.9
1,914,516	-				-0.2