Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08265

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,738,511	+		DZA65_RS08260	0.64	+1.6
1,738,511	+		DZA65_RS08260	0.64	+0.5
1,738,512	-		DZA65_RS08260	0.64	-0.3
1,738,643	+		DZA65_RS08260	0.74	-1.3
1,738,643	+		DZA65_RS08260	0.74	-0.3
1,738,644	-		DZA65_RS08260	0.74	-0.5
1,738,644	-		DZA65_RS08260	0.74	-2.3
1,738,644	-		DZA65_RS08260	0.74	-0.9
1,738,720	-		DZA65_RS08260	0.79	+0.0
1,738,746	+		DZA65_RS08260	0.81	-0.4
1,738,769	+		DZA65_RS08260	0.83	+0.5
1,738,769	+		DZA65_RS08260	0.83	-0.6
1,738,770	-		DZA65_RS08260	0.83	+0.1
1,738,802	+		DZA65_RS08260	0.85	-1.3
1,738,803	-		DZA65_RS08260	0.85	-0.2
1,738,814	+		DZA65_RS08260	0.86	-0.0
1,738,814	+		DZA65_RS08260	0.86	-0.4
1,738,814	+		DZA65_RS08260	0.86	-0.2
1,738,814	+		DZA65_RS08260	0.86	-0.4
1,738,814	+		DZA65_RS08260	0.86	-0.9
1,738,815	-		DZA65_RS08260	0.86	-0.1
1,738,815	-		DZA65_RS08260	0.86	+0.1
1,738,815	-		DZA65_RS08260	0.86	-1.1
1,738,815	-		DZA65_RS08260	0.86	-0.7
1,738,815	-		DZA65_RS08260	0.86	+1.1
1,738,817	+		DZA65_RS08260	0.86	+0.4
1,738,818	-		DZA65_RS08260	0.86	-1.3
1,738,818	-		DZA65_RS08260	0.86	-0.8
1,738,866	+		DZA65_RS08260	0.90	+1.7
1,738,866	+		DZA65_RS08260	0.90	-0.3
1,738,869	+		DZA65_RS08260	0.90	-0.3
1,738,869	+		DZA65_RS08260	0.90	-1.1
1,738,869	+		DZA65_RS08260	0.90	-0.4
1,738,869	+		DZA65_RS08260	0.90	+0.9
1,738,869	+		DZA65_RS08260	0.90	+0.6
1,738,870	-		DZA65_RS08260	0.90	-0.3
1,738,870	-		DZA65_RS08260	0.90	+0.2
1,738,886	-				-1.7
1,738,936	+				-1.1
1,739,035	+				+1.1
1,739,035	+				-2.4
1,739,037	+				+0.8
1,739,038	-				-0.1
1,739,055	-				-1.8
1,739,055	-				+0.7
1,739,055	-				-0.2
1,739,104	+				-0.3
1,739,104	+				-0.0
1,739,105	-				-0.6
1,739,113	+				-0.8
1,739,114	-				-0.3
1,739,114	-				+1.1
1,739,115	+				-0.1
1,739,116	-				-0.0
1,739,118	+				-1.6
1,739,118	+				-0.1
1,739,118	+				+0.3
1,739,118	+				-0.6
1,739,119	-				-1.0
1,739,119	-				-0.5
1,739,119	-				-0.8
1,739,119	-				+0.1
1,739,119	-				+0.6
1,739,119	-				+0.4
1,739,119	-				+0.4
1,739,119	-				-0.3
1,739,119	-				-1.1
1,739,119	-				+0.2
1,739,119	-				-0.1
1,739,119	-				+0.3
1,739,119	-				-0.5
1,739,119	-				-1.1
1,739,126	+				-0.1
1,739,126	+				+0.6
1,739,126	+				+1.1
1,739,127	-				+0.3
1,739,128	+				+0.1
1,739,128	+				-0.2
1,739,129	-				-1.9
1,739,129	-				-0.7
1,739,129	-				-0.7
1,739,132	+				-0.1
1,739,132	+				+0.1
1,739,132	+				+0.5
1,739,132	+				-0.3
1,739,133	-				+0.1
1,739,133	-				-2.6
1,739,133	-				+0.0
1,739,133	-				+0.1
1,739,134	+				+0.1
1,739,134	+				-1.3
1,739,134	+				-0.7
1,739,134	+				-0.2
1,739,134	+				-0.3
1,739,135	-				+1.0
1,739,135	-				-1.4
1,739,135	-				+0.1
1,739,137	+				-1.5
1,739,137	+				-0.9
1,739,137	+				-0.2
1,739,137	+				+0.2
1,739,138	-				+0.6
1,739,138	-				-0.3
1,739,138	-				-0.7
1,739,138	-				-0.4
1,739,138	-				-0.8
1,739,138	-				-1.0
1,739,138	-				+0.4
1,739,138	-				-1.3
1,739,145	+				+2.1
1,739,145	+				-0.1
1,739,147	+				-1.2
1,739,147	+				-0.7
1,739,148	-				-0.1
1,739,148	-				+0.7
1,739,151	+				-0.1
1,739,151	+				+0.6
1,739,152	-				+0.6
1,739,152	-				+0.3
1,739,156	+				-1.6
1,739,156	+				+0.3
1,739,156	+				-0.1
1,739,156	+				+0.8
1,739,156	+				+0.9
1,739,157	-				+0.1
1,739,157	-				-0.1
1,739,157	-				-0.3
1,739,157	-				+0.3
1,739,157	-				-0.4
1,739,157	-				+0.2
1,739,164	+				+0.5
1,739,164	+				-1.3
1,739,166	+				-0.1
1,739,166	+				+0.7
1,739,167	-				+0.2
1,739,167	-				-1.2
1,739,167	-				+0.0
1,739,170	+				-1.6
1,739,170	+				+0.1
1,739,170	+				-0.6
1,739,171	-				-0.2
1,739,171	-				-1.8
1,739,184	-				+0.1
1,739,185	+				-0.5
1,739,185	+				-0.1
1,739,185	+				+0.7
1,739,185	+				+0.4
1,739,185	+				+1.4
1,739,186	-				-0.1
1,739,186	-				-0.5
1,739,186	-				-0.6
1,739,186	-				+0.7
1,739,186	-				-0.0
1,739,186	-				+0.5
1,739,186	-				-0.3
1,739,189	+				-0.0
1,739,189	+				-1.1
1,739,231	-				+0.6
1,739,231	-				+1.9
1,739,231	-				-0.3
1,739,235	+				-1.3
1,739,235	+				-1.1
1,739,271	-				-0.3
1,739,271	-				-0.4
1,739,271	-				+0.6
1,739,277	+				-0.2
1,739,277	+				-1.8
1,739,278	-				-0.4
1,739,278	-				-0.1
1,739,383	+				+0.6
1,739,383	+				+0.1
1,739,383	+				-0.7
1,739,383	+				+0.7
1,739,384	-				+1.8
1,739,384	-				-0.3
1,739,397	-				-0.3
1,739,397	-				-1.3
1,739,407	-				-0.6
1,739,422	+				+1.2
1,739,422	+				+1.7
1,739,423	-				+0.5
1,739,423	-				-0.4
1,739,467	+				+0.3
1,739,484	+				+0.1
1,739,484	+				-0.6
1,739,573	+				-1.1
1,739,574	-				-2.1
1,739,838	+		DZA65_RS08265	0.21	+0.0
1,739,838	+		DZA65_RS08265	0.21	-0.3
1,739,839	-		DZA65_RS08265	0.22	-0.7
1,740,095	+		DZA65_RS08265	0.38	+0.4
1,740,095	+		DZA65_RS08265	0.38	+0.7
1,740,096	-		DZA65_RS08265	0.38	+0.5
1,740,096	-		DZA65_RS08265	0.38	-0.5
1,740,180	+		DZA65_RS08265	0.43	-0.1
1,740,180	+		DZA65_RS08265	0.43	+0.3
1,740,180	+		DZA65_RS08265	0.43	-1.9
1,740,180	+		DZA65_RS08265	0.43	+0.0
1,740,209	+		DZA65_RS08265	0.45	+0.1
1,740,209	+		DZA65_RS08265	0.45	+0.1
1,740,210	-		DZA65_RS08265	0.45	-0.6
1,740,364	+		DZA65_RS08265	0.55	+1.2
1,740,364	+		DZA65_RS08265	0.55	+1.0
1,740,364	+		DZA65_RS08265	0.55	-0.4
1,740,365	-		DZA65_RS08265	0.55	-1.4
1,740,365	-				+0.9
1,740,365	-		DZA65_RS08265	0.55	-0.4
1,740,365	-		DZA65_RS08265	0.55	-0.9
1,740,365	-		DZA65_RS08265	0.55	+1.1
1,740,365	-		DZA65_RS08265	0.55	+0.2
1,740,365	-		DZA65_RS08265	0.55	+1.2
1,740,365	-		DZA65_RS08265	0.55	+0.6
1,740,365	-		DZA65_RS08265	0.55	+1.5
1,740,365	-		DZA65_RS08265	0.55	+0.3
1,740,388	+		DZA65_RS08265	0.56	-0.3
1,740,389	-		DZA65_RS08265	0.56	-0.8
1,740,389	-		DZA65_RS08265	0.56	-0.4
1,740,418	-		DZA65_RS08265	0.58	+0.5
1,740,418	-		DZA65_RS08265	0.58	+0.4
1,740,418	-		DZA65_RS08265	0.58	-0.4
1,740,455	+		DZA65_RS08265	0.60	+1.5
1,740,455	+		DZA65_RS08265	0.60	-0.9
1,740,456	-		DZA65_RS08265	0.60	-0.2
1,740,456	-		DZA65_RS08265	0.60	+0.7
1,740,456	-		DZA65_RS08265	0.60	-0.4
1,740,456	-		DZA65_RS08265	0.60	-0.1
1,740,507	+		DZA65_RS08265	0.64	+0.1
1,740,508	-		DZA65_RS08265	0.64	-0.4
1,740,582	+		DZA65_RS08265	0.68	-0.7
1,740,583	-		DZA65_RS08265	0.68	-0.0
1,740,583	-		DZA65_RS08265	0.68	-0.5
1,740,583	-		DZA65_RS08265	0.68	-0.5
1,740,656	+		DZA65_RS08265	0.73	-0.8
1,740,657	-		DZA65_RS08265	0.73	+0.2
1,740,657	-		DZA65_RS08265	0.73	-0.2
1,740,754	+		DZA65_RS08265	0.79	+0.6
1,740,754	+		DZA65_RS08265	0.79	-1.7
1,740,755	-		DZA65_RS08265	0.79	-0.5
1,740,951	+				-0.2
1,741,098	+				-0.8
1,741,098	+				-0.2
1,741,098	+				-0.7
1,741,098	+				-1.5
1,741,173	+		DZA65_RS08270	0.19	-0.9
1,741,174	-		DZA65_RS08270	0.19	-0.3
1,741,174	-		DZA65_RS08270	0.19	-0.1
1,741,310	+				-0.7
1,741,314	-		DZA65_RS08270	0.54	+0.7
1,741,314	-		DZA65_RS08270	0.54	-1.4
1,741,406	-		DZA65_RS08270	0.77	-0.7
1,741,466	+				-0.8
1,741,467	-				-0.7
1,741,467	-				+0.1
1,741,467	-				-0.1
1,741,502	+				-0.1
1,741,502	+				-0.1
1,741,502	+				+0.7
1,741,502	+				+0.0
1,741,502	+				+1.3
1,741,503	-				-1.2
1,741,503	-				-0.4
1,741,503	-				-0.7
1,741,503	-				-0.1
1,741,589	+		DZA65_RS08275	0.13	-0.6
1,741,589	+		DZA65_RS08275	0.13	+0.4
1,741,589	+		DZA65_RS08275	0.13	+0.4
1,741,589	+		DZA65_RS08275	0.13	-0.1
1,741,589	+		DZA65_RS08275	0.13	+0.6
1,741,590	-		DZA65_RS08275	0.13	+0.2
1,741,590	-		DZA65_RS08275	0.13	+0.4
1,741,590	-		DZA65_RS08275	0.13	+0.5
1,741,649	+		DZA65_RS08275	0.21	-0.5
1,741,649	+		DZA65_RS08275	0.21	+0.9
1,741,649	+		DZA65_RS08275	0.21	-1.2
1,741,650	-		DZA65_RS08275	0.21	-1.5
1,741,650	-		DZA65_RS08275	0.21	+0.0
1,741,655	+		DZA65_RS08275	0.22	-2.1
1,741,655	+		DZA65_RS08275	0.22	+0.0
1,742,070	+		DZA65_RS08275	0.81	-0.1