Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS08170 and DZA65_RS08175 are separated by 12 nucleotides DZA65_RS08175 and DZA65_RS08180 overlap by 8 nucleotides DZA65_RS08180 and DZA65_RS08190 are separated by 414 nucleotides
DZA65_RS08170: DZA65_RS08170 - formate dehydrogenase-N subunit alpha, at 1,708,140 to 1,711,187
_RS08170
DZA65_RS08175: DZA65_RS08175 - formate dehydrogenase subunit beta, at 1,711,200 to 1,712,108
_RS08175
DZA65_RS08180: DZA65_RS08180 - formate dehydrogenase-N subunit gamma, at 1,712,101 to 1,712,742
_RS08180
DZA65_RS08190: DZA65_RS08190 - LacI family DNA-binding transcriptional regulator, at 1,713,157 to 1,714,182
_RS08190
Position (kb) 1712
1713 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1711.152 kb on + strand at 1711.152 kb on + strand at 1711.152 kb on + strand at 1711.153 kb on - strand at 1711.185 kb on + strand at 1711.185 kb on + strand at 1711.186 kb on - strand at 1711.191 kb on + strand at 1711.192 kb on - strand at 1711.199 kb on + strand at 1711.199 kb on + strand at 1711.199 kb on + strand at 1711.200 kb on - strand at 1711.220 kb on + strand at 1711.220 kb on + strand at 1711.221 kb on - strand at 1711.223 kb on + strand at 1711.223 kb on + strand at 1711.223 kb on + strand at 1711.277 kb on + strand at 1711.277 kb on + strand at 1711.282 kb on - strand at 1711.298 kb on + strand, within DZA65_RS08175 at 1711.298 kb on + strand, within DZA65_RS08175 at 1711.299 kb on - strand, within DZA65_RS08175 at 1711.325 kb on + strand, within DZA65_RS08175 at 1711.396 kb on - strand, within DZA65_RS08175 at 1711.488 kb on - strand, within DZA65_RS08175 at 1711.488 kb on - strand, within DZA65_RS08175 at 1711.499 kb on + strand, within DZA65_RS08175 at 1711.499 kb on + strand, within DZA65_RS08175 at 1711.499 kb on + strand, within DZA65_RS08175 at 1711.499 kb on + strand, within DZA65_RS08175 at 1711.500 kb on - strand, within DZA65_RS08175 at 1711.500 kb on - strand, within DZA65_RS08175 at 1711.500 kb on - strand, within DZA65_RS08175 at 1711.500 kb on - strand, within DZA65_RS08175 at 1711.500 kb on - strand, within DZA65_RS08175 at 1711.554 kb on - strand, within DZA65_RS08175 at 1711.560 kb on + strand, within DZA65_RS08175 at 1711.561 kb on - strand, within DZA65_RS08175 at 1711.561 kb on - strand, within DZA65_RS08175 at 1711.612 kb on - strand, within DZA65_RS08175 at 1711.679 kb on + strand, within DZA65_RS08175 at 1711.679 kb on + strand, within DZA65_RS08175 at 1711.679 kb on + strand, within DZA65_RS08175 at 1711.679 kb on + strand, within DZA65_RS08175 at 1711.680 kb on - strand, within DZA65_RS08175 at 1711.680 kb on - strand, within DZA65_RS08175 at 1711.680 kb on - strand, within DZA65_RS08175 at 1711.680 kb on - strand, within DZA65_RS08175 at 1711.681 kb on - strand, within DZA65_RS08175 at 1711.840 kb on - strand, within DZA65_RS08175 at 1711.875 kb on + strand, within DZA65_RS08175 at 1711.875 kb on + strand, within DZA65_RS08175 at 1711.875 kb on + strand, within DZA65_RS08175 at 1711.875 kb on + strand, within DZA65_RS08175 at 1711.875 kb on + strand, within DZA65_RS08175 at 1711.875 kb on + strand, within DZA65_RS08175 at 1711.875 kb on + strand, within DZA65_RS08175 at 1711.875 kb on + strand, within DZA65_RS08175 at 1711.875 kb on + strand, within DZA65_RS08175 at 1711.875 kb on + strand, within DZA65_RS08175 at 1711.875 kb on + strand, within DZA65_RS08175 at 1711.875 kb on + strand, within DZA65_RS08175 at 1711.875 kb on + strand, within DZA65_RS08175 at 1711.875 kb on + strand, within DZA65_RS08175 at 1711.875 kb on + strand, within DZA65_RS08175 at 1711.875 kb on + strand, within DZA65_RS08175 at 1711.875 kb on + strand, within DZA65_RS08175 at 1711.875 kb on + strand, within DZA65_RS08175 at 1711.875 kb on + strand, within DZA65_RS08175 at 1711.875 kb on + strand, within DZA65_RS08175 at 1711.876 kb on - strand, within DZA65_RS08175 at 1711.876 kb on - strand, within DZA65_RS08175 at 1711.876 kb on - strand, within DZA65_RS08175 at 1711.876 kb on - strand, within DZA65_RS08175 at 1711.876 kb on - strand, within DZA65_RS08175 at 1711.876 kb on - strand, within DZA65_RS08175 at 1711.876 kb on - strand, within DZA65_RS08175 at 1711.876 kb on - strand, within DZA65_RS08175 at 1711.876 kb on - strand, within DZA65_RS08175 at 1711.876 kb on - strand, within DZA65_RS08175 at 1711.876 kb on - strand, within DZA65_RS08175 at 1711.876 kb on - strand, within DZA65_RS08175 at 1711.876 kb on - strand, within DZA65_RS08175 at 1711.876 kb on - strand, within DZA65_RS08175 at 1711.876 kb on - strand, within DZA65_RS08175 at 1711.876 kb on - strand, within DZA65_RS08175 at 1711.876 kb on - strand, within DZA65_RS08175 at 1712.025 kb on + strand at 1712.025 kb on + strand at 1712.025 kb on + strand at 1712.026 kb on - strand at 1712.026 kb on - strand at 1712.026 kb on - strand at 1712.026 kb on - strand at 1712.026 kb on - strand at 1712.026 kb on - strand at 1712.026 kb on - strand at 1712.096 kb on + strand at 1712.096 kb on + strand at 1712.096 kb on + strand at 1712.096 kb on + strand at 1712.096 kb on + strand at 1712.096 kb on + strand at 1712.097 kb on - strand at 1712.097 kb on - strand at 1712.097 kb on - strand at 1712.097 kb on - strand at 1712.097 kb on - strand at 1712.097 kb on - strand at 1712.097 kb on - strand at 1712.106 kb on + strand at 1712.107 kb on - strand at 1712.168 kb on + strand, within DZA65_RS08180 at 1712.169 kb on - strand, within DZA65_RS08180 at 1712.169 kb on - strand, within DZA65_RS08180 at 1712.169 kb on - strand, within DZA65_RS08180 at 1712.169 kb on - strand, within DZA65_RS08180 at 1712.283 kb on + strand, within DZA65_RS08180 at 1712.334 kb on + strand, within DZA65_RS08180 at 1712.334 kb on + strand, within DZA65_RS08180 at 1712.334 kb on + strand, within DZA65_RS08180 at 1712.334 kb on + strand, within DZA65_RS08180 at 1712.335 kb on - strand, within DZA65_RS08180 at 1712.335 kb on - strand, within DZA65_RS08180 at 1712.335 kb on - strand, within DZA65_RS08180 at 1712.335 kb on - strand, within DZA65_RS08180 at 1712.373 kb on + strand, within DZA65_RS08180 at 1712.373 kb on + strand, within DZA65_RS08180 at 1712.374 kb on - strand, within DZA65_RS08180 at 1712.374 kb on - strand, within DZA65_RS08180 at 1712.425 kb on + strand, within DZA65_RS08180 at 1712.425 kb on + strand, within DZA65_RS08180 at 1712.425 kb on + strand, within DZA65_RS08180 at 1712.425 kb on + strand, within DZA65_RS08180 at 1712.425 kb on + strand, within DZA65_RS08180 at 1712.426 kb on - strand, within DZA65_RS08180 at 1712.426 kb on - strand, within DZA65_RS08180 at 1712.426 kb on - strand, within DZA65_RS08180 at 1712.426 kb on - strand, within DZA65_RS08180 at 1712.426 kb on - strand, within DZA65_RS08180 at 1712.426 kb on - strand, within DZA65_RS08180 at 1712.426 kb on - strand, within DZA65_RS08180 at 1712.426 kb on - strand, within DZA65_RS08180 at 1712.426 kb on - strand, within DZA65_RS08180 at 1712.512 kb on + strand, within DZA65_RS08180 at 1712.534 kb on + strand, within DZA65_RS08180 at 1712.611 kb on + strand, within DZA65_RS08180 at 1712.611 kb on + strand, within DZA65_RS08180 at 1712.611 kb on + strand, within DZA65_RS08180 at 1712.611 kb on + strand, within DZA65_RS08180 at 1712.611 kb on + strand, within DZA65_RS08180 at 1712.611 kb on + strand, within DZA65_RS08180 at 1712.611 kb on + strand, within DZA65_RS08180 at 1712.611 kb on + strand, within DZA65_RS08180 at 1712.611 kb on + strand, within DZA65_RS08180 at 1712.611 kb on + strand, within DZA65_RS08180 at 1712.611 kb on + strand, within DZA65_RS08180 at 1712.611 kb on + strand, within DZA65_RS08180 at 1712.611 kb on + strand, within DZA65_RS08180 at 1712.611 kb on + strand, within DZA65_RS08180 at 1712.611 kb on + strand, within DZA65_RS08180 at 1712.612 kb on - strand, within DZA65_RS08180 at 1712.612 kb on - strand, within DZA65_RS08180 at 1712.612 kb on - strand, within DZA65_RS08180 at 1712.612 kb on - strand, within DZA65_RS08180 at 1712.612 kb on - strand, within DZA65_RS08180 at 1712.612 kb on - strand, within DZA65_RS08180 at 1712.612 kb on - strand, within DZA65_RS08180 at 1712.612 kb on - strand, within DZA65_RS08180 at 1712.612 kb on - strand, within DZA65_RS08180 at 1712.612 kb on - strand, within DZA65_RS08180 at 1712.612 kb on - strand, within DZA65_RS08180 at 1712.638 kb on - strand, within DZA65_RS08180 at 1712.638 kb on - strand, within DZA65_RS08180 at 1712.638 kb on - strand, within DZA65_RS08180 at 1712.727 kb on + strand at 1712.727 kb on + strand at 1712.733 kb on + strand at 1712.734 kb on - strand at 1712.740 kb on + strand at 1712.740 kb on + strand at 1712.740 kb on + strand at 1712.741 kb on - strand at 1712.741 kb on - strand at 1712.741 kb on - strand at 1712.749 kb on + strand at 1712.926 kb on - strand at 1712.986 kb on + strand at 1712.986 kb on + strand at 1712.986 kb on + strand at 1712.986 kb on + strand at 1712.987 kb on - strand at 1712.987 kb on - strand at 1712.992 kb on + strand at 1712.992 kb on + strand at 1712.992 kb on + strand at 1712.993 kb on - strand at 1712.993 kb on - strand at 1712.993 kb on - strand at 1712.993 kb on - strand at 1712.993 kb on - strand at 1712.993 kb on - strand at 1712.993 kb on - strand at 1712.993 kb on - strand at 1713.012 kb on + strand at 1713.013 kb on - strand at 1713.046 kb on + strand at 1713.046 kb on + strand at 1713.046 kb on + strand at 1713.046 kb on + strand at 1713.046 kb on + strand at 1713.046 kb on + strand at 1713.046 kb on + strand at 1713.046 kb on + strand at 1713.047 kb on - strand at 1713.047 kb on - strand at 1713.047 kb on - strand at 1713.047 kb on - strand at 1713.047 kb on - strand at 1713.047 kb on - strand at 1713.047 kb on - strand at 1713.047 kb on - strand at 1713.298 kb on - strand, within DZA65_RS08190 at 1713.378 kb on + strand, within DZA65_RS08190 at 1713.379 kb on - strand, within DZA65_RS08190 at 1713.559 kb on + strand, within DZA65_RS08190 at 1713.560 kb on - strand, within DZA65_RS08190
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 1,711,152 + +0.9 1,711,152 + -0.7 1,711,152 + +0.5 1,711,153 - +0.8 1,711,185 + -0.7 1,711,185 + +0.9 1,711,186 - -0.1 1,711,191 + +0.2 1,711,192 - -3.1 1,711,199 + +0.1 1,711,199 + -1.9 1,711,199 + +0.7 1,711,200 - -0.3 1,711,220 + +1.5 1,711,220 + -0.1 1,711,221 - -0.4 1,711,223 + -1.1 1,711,223 + +0.0 1,711,223 + +0.7 1,711,277 + -0.3 1,711,277 + -0.4 1,711,282 - -1.4 1,711,298 + DZA65_RS08175 0.11 -0.2 1,711,298 + DZA65_RS08175 0.11 -0.9 1,711,299 - DZA65_RS08175 0.11 +0.2 1,711,325 + DZA65_RS08175 0.14 -0.4 1,711,396 - DZA65_RS08175 0.22 -0.5 1,711,488 - DZA65_RS08175 0.32 -0.6 1,711,488 - DZA65_RS08175 0.32 -0.3 1,711,499 + DZA65_RS08175 0.33 -1.3 1,711,499 + DZA65_RS08175 0.33 -0.7 1,711,499 + DZA65_RS08175 0.33 +0.1 1,711,499 + DZA65_RS08175 0.33 -1.9 1,711,500 - DZA65_RS08175 0.33 +0.2 1,711,500 - DZA65_RS08175 0.33 +0.1 1,711,500 - DZA65_RS08175 0.33 -1.4 1,711,500 - DZA65_RS08175 0.33 -0.2 1,711,500 - DZA65_RS08175 0.33 -0.1 1,711,554 - DZA65_RS08175 0.39 -1.0 1,711,560 + DZA65_RS08175 0.40 -0.1 1,711,561 - DZA65_RS08175 0.40 -0.3 1,711,561 - DZA65_RS08175 0.40 +0.1 1,711,612 - DZA65_RS08175 0.45 +0.1 1,711,679 + DZA65_RS08175 0.53 -0.1 1,711,679 + DZA65_RS08175 0.53 -0.1 1,711,679 + DZA65_RS08175 0.53 +0.0 1,711,679 + DZA65_RS08175 0.53 -1.4 1,711,680 - DZA65_RS08175 0.53 -0.9 1,711,680 - DZA65_RS08175 0.53 +0.2 1,711,680 - DZA65_RS08175 0.53 -1.1 1,711,680 - DZA65_RS08175 0.53 +0.2 1,711,681 - DZA65_RS08175 0.53 +0.1 1,711,840 - DZA65_RS08175 0.70 +0.5 1,711,875 + DZA65_RS08175 0.74 +0.2 1,711,875 + DZA65_RS08175 0.74 -1.6 1,711,875 + DZA65_RS08175 0.74 -1.1 1,711,875 + DZA65_RS08175 0.74 +0.7 1,711,875 + DZA65_RS08175 0.74 -0.9 1,711,875 + DZA65_RS08175 0.74 +0.9 1,711,875 + DZA65_RS08175 0.74 -0.1 1,711,875 + DZA65_RS08175 0.74 -0.1 1,711,875 + DZA65_RS08175 0.74 +0.1 1,711,875 + DZA65_RS08175 0.74 +0.2 1,711,875 + DZA65_RS08175 0.74 -0.3 1,711,875 + DZA65_RS08175 0.74 +0.3 1,711,875 + DZA65_RS08175 0.74 +0.2 1,711,875 + DZA65_RS08175 0.74 -0.4 1,711,875 + DZA65_RS08175 0.74 +0.1 1,711,875 + DZA65_RS08175 0.74 -0.1 1,711,875 + DZA65_RS08175 0.74 +0.1 1,711,875 + DZA65_RS08175 0.74 -0.1 1,711,875 + DZA65_RS08175 0.74 -0.3 1,711,875 + DZA65_RS08175 0.74 -0.2 1,711,876 - DZA65_RS08175 0.74 +0.4 1,711,876 - DZA65_RS08175 0.74 -0.4 1,711,876 - DZA65_RS08175 0.74 -2.7 1,711,876 - DZA65_RS08175 0.74 -1.1 1,711,876 - DZA65_RS08175 0.74 -0.5 1,711,876 - DZA65_RS08175 0.74 -0.7 1,711,876 - DZA65_RS08175 0.74 -1.0 1,711,876 - DZA65_RS08175 0.74 +0.6 1,711,876 - DZA65_RS08175 0.74 -0.3 1,711,876 - DZA65_RS08175 0.74 -0.3 1,711,876 - DZA65_RS08175 0.74 +0.9 1,711,876 - DZA65_RS08175 0.74 -0.1 1,711,876 - DZA65_RS08175 0.74 -0.1 1,711,876 - DZA65_RS08175 0.74 -1.0 1,711,876 - DZA65_RS08175 0.74 -0.2 1,711,876 - DZA65_RS08175 0.74 +0.9 1,711,876 - DZA65_RS08175 0.74 -0.6 1,712,025 + -1.0 1,712,025 + +0.9 1,712,025 + -0.6 1,712,026 - -2.4 1,712,026 - -0.3 1,712,026 - -0.2 1,712,026 - +1.2 1,712,026 - -1.8 1,712,026 - +0.4 1,712,026 - -0.4 1,712,096 + +0.9 1,712,096 + -0.0 1,712,096 + -0.4 1,712,096 + -0.3 1,712,096 + -1.1 1,712,096 + -0.4 1,712,097 - +0.0 1,712,097 - +0.7 1,712,097 - -1.8 1,712,097 - -0.3 1,712,097 - -0.9 1,712,097 - -0.5 1,712,097 - -0.5 1,712,106 + -1.0 1,712,107 - -2.9 1,712,168 + DZA65_RS08180 0.10 +0.4 1,712,169 - DZA65_RS08180 0.11 +0.2 1,712,169 - DZA65_RS08180 0.11 -0.9 1,712,169 - DZA65_RS08180 0.11 +0.9 1,712,169 - DZA65_RS08180 0.11 -1.0 1,712,283 + DZA65_RS08180 0.28 +0.1 1,712,334 + DZA65_RS08180 0.36 -0.3 1,712,334 + DZA65_RS08180 0.36 +0.1 1,712,334 + DZA65_RS08180 0.36 -1.1 1,712,334 + DZA65_RS08180 0.36 -0.5 1,712,335 - DZA65_RS08180 0.36 +0.1 1,712,335 - DZA65_RS08180 0.36 -0.3 1,712,335 - DZA65_RS08180 0.36 -0.4 1,712,335 - DZA65_RS08180 0.36 +0.3 1,712,373 + DZA65_RS08180 0.42 +1.6 1,712,373 + DZA65_RS08180 0.42 +0.3 1,712,374 - DZA65_RS08180 0.43 +0.1 1,712,374 - DZA65_RS08180 0.43 +1.9 1,712,425 + DZA65_RS08180 0.50 +0.5 1,712,425 + DZA65_RS08180 0.50 +0.6 1,712,425 + DZA65_RS08180 0.50 +0.1 1,712,425 + DZA65_RS08180 0.50 -0.5 1,712,425 + DZA65_RS08180 0.50 -0.1 1,712,426 - DZA65_RS08180 0.51 +0.6 1,712,426 - DZA65_RS08180 0.51 +0.3 1,712,426 - DZA65_RS08180 0.51 +0.7 1,712,426 - DZA65_RS08180 0.51 -0.1 1,712,426 - DZA65_RS08180 0.51 -0.4 1,712,426 - DZA65_RS08180 0.51 +0.5 1,712,426 - DZA65_RS08180 0.51 +0.6 1,712,426 - DZA65_RS08180 0.51 -0.9 1,712,426 - DZA65_RS08180 0.51 -0.9 1,712,512 + DZA65_RS08180 0.64 -0.1 1,712,534 + DZA65_RS08180 0.67 -1.2 1,712,611 + DZA65_RS08180 0.79 -0.1 1,712,611 + DZA65_RS08180 0.79 +0.8 1,712,611 + DZA65_RS08180 0.79 +0.6 1,712,611 + DZA65_RS08180 0.79 +0.9 1,712,611 + DZA65_RS08180 0.79 +0.1 1,712,611 + DZA65_RS08180 0.79 -0.7 1,712,611 + DZA65_RS08180 0.79 -0.5 1,712,611 + DZA65_RS08180 0.79 +1.1 1,712,611 + DZA65_RS08180 0.79 -0.1 1,712,611 + DZA65_RS08180 0.79 -2.1 1,712,611 + DZA65_RS08180 0.79 -0.1 1,712,611 + DZA65_RS08180 0.79 +0.1 1,712,611 + DZA65_RS08180 0.79 -0.7 1,712,611 + DZA65_RS08180 0.79 +0.4 1,712,611 + DZA65_RS08180 0.79 -0.7 1,712,612 - DZA65_RS08180 0.80 -1.4 1,712,612 - DZA65_RS08180 0.80 -1.2 1,712,612 - DZA65_RS08180 0.80 +0.3 1,712,612 - DZA65_RS08180 0.80 +1.0 1,712,612 - DZA65_RS08180 0.80 -0.1 1,712,612 - DZA65_RS08180 0.80 +0.6 1,712,612 - DZA65_RS08180 0.80 -0.1 1,712,612 - DZA65_RS08180 0.80 -0.7 1,712,612 - DZA65_RS08180 0.80 +0.9 1,712,612 - DZA65_RS08180 0.80 -0.1 1,712,612 - DZA65_RS08180 0.80 +0.7 1,712,638 - DZA65_RS08180 0.84 +0.4 1,712,638 - DZA65_RS08180 0.84 +0.7 1,712,638 - DZA65_RS08180 0.84 -0.9 1,712,727 + -1.4 1,712,727 + +0.2 1,712,733 + +1.1 1,712,734 - +0.1 1,712,740 + -1.0 1,712,740 + +0.5 1,712,740 + -1.0 1,712,741 - -0.7 1,712,741 - +0.5 1,712,741 - -1.4 1,712,749 + -0.1 1,712,926 - -0.4 1,712,986 + -0.1 1,712,986 + +0.3 1,712,986 + -0.3 1,712,986 + +0.1 1,712,987 - -0.7 1,712,987 - -0.4 1,712,992 + -0.6 1,712,992 + -0.4 1,712,992 + +0.7 1,712,993 - -0.3 1,712,993 - -0.3 1,712,993 - -0.2 1,712,993 - +1.1 1,712,993 - -1.3 1,712,993 - -1.0 1,712,993 - +0.3 1,712,993 - +0.0 1,713,012 + +0.6 1,713,013 - -2.1 1,713,046 + -0.9 1,713,046 + +0.6 1,713,046 + +0.9 1,713,046 + +0.4 1,713,046 + +0.0 1,713,046 + -0.0 1,713,046 + +0.7 1,713,046 + +0.1 1,713,047 - +1.9 1,713,047 - -1.0 1,713,047 - +0.6 1,713,047 - -0.1 1,713,047 - -0.7 1,713,047 - +0.7 1,713,047 - -0.9 1,713,047 - -0.9 1,713,298 - DZA65_RS08190 0.14 -0.9 1,713,378 + DZA65_RS08190 0.22 -0.0 1,713,379 - DZA65_RS08190 0.22 +0.3 1,713,559 + DZA65_RS08190 0.39 -0.5 1,713,560 - DZA65_RS08190 0.39 -3.0
Or see this region's nucleotide sequence