Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07600

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,582,897	+				+0.3
1,582,897	+				-2.5
1,583,114	+				+0.1
1,583,114	+				+0.2
1,583,114	+				-0.7
1,583,114	+				-1.9
1,583,114	+				+0.4
1,583,114	+				-2.7
1,583,115	-				-1.4
1,583,115	-				-0.5
1,583,115	-				-0.7
1,583,115	-				-0.3
1,583,115	-				-0.4
1,583,149	-				-0.1
1,583,149	-				+0.5
1,583,149	-				-0.7
1,583,269	+				+0.2
1,583,303	-				-2.1
1,583,571	+		DZA65_RS07595	0.44	-0.8
1,583,636	+		DZA65_RS07595	0.65	-1.2
1,583,649	+		DZA65_RS07595	0.69	+1.7
1,583,649	+		DZA65_RS07595	0.69	-0.7
1,583,650	-		DZA65_RS07595	0.70	+0.1
1,583,779	+				-0.6
1,583,909	-		DZA65_RS07600	0.12	+0.3
1,583,929	-		DZA65_RS07600	0.14	-1.5
1,583,951	+		DZA65_RS07600	0.17	+0.2
1,583,952	-		DZA65_RS07600	0.17	+0.6
1,583,976	+		DZA65_RS07600	0.19	+0.6
1,583,976	+		DZA65_RS07600	0.19	-0.5
1,583,977	-		DZA65_RS07600	0.19	-1.3
1,584,009	+		DZA65_RS07600	0.22	-0.3
1,584,009	+		DZA65_RS07600	0.22	-1.4
1,584,009	+		DZA65_RS07600	0.22	+2.2
1,584,009	+		DZA65_RS07600	0.22	-0.7
1,584,010	-		DZA65_RS07600	0.22	-1.1
1,584,010	-		DZA65_RS07600	0.22	-0.8
1,584,010	-		DZA65_RS07600	0.22	+0.4
1,584,010	-		DZA65_RS07600	0.22	-1.9
1,584,107	+		DZA65_RS07600	0.32	+0.0
1,584,182	+		DZA65_RS07600	0.40	+0.1
1,584,182	+		DZA65_RS07600	0.40	+0.6
1,584,182	+		DZA65_RS07600	0.40	-2.2
1,584,182	+		DZA65_RS07600	0.40	-0.1
1,584,182	+		DZA65_RS07600	0.40	+0.6
1,584,182	+		DZA65_RS07600	0.40	-0.2
1,584,183	-		DZA65_RS07600	0.40	-1.1
1,584,183	-		DZA65_RS07600	0.40	-0.6
1,584,183	-		DZA65_RS07600	0.40	-1.4
1,584,183	-		DZA65_RS07600	0.40	-0.1
1,584,183	-		DZA65_RS07600	0.40	+1.2
1,584,183	-		DZA65_RS07600	0.40	+0.7
1,584,198	-		DZA65_RS07600	0.41	-0.4
1,584,252	+		DZA65_RS07600	0.47	-0.2
1,584,252	+		DZA65_RS07600	0.47	-0.7
1,584,253	-		DZA65_RS07600	0.47	+0.7
1,584,253	-		DZA65_RS07600	0.47	+0.3
1,584,253	-		DZA65_RS07600	0.47	-1.2
1,584,254	+		DZA65_RS07600	0.47	-1.7
1,584,254	+		DZA65_RS07600	0.47	+0.9
1,584,254	+		DZA65_RS07600	0.47	+0.1
1,584,255	-		DZA65_RS07600	0.47	+0.3
1,584,255	-		DZA65_RS07600	0.47	+0.5
1,584,275	+		DZA65_RS07600	0.49	-0.1
1,584,275	+		DZA65_RS07600	0.49	+0.0
1,584,275	+		DZA65_RS07600	0.49	-1.7
1,584,275	+		DZA65_RS07600	0.49	+0.9
1,584,275	+		DZA65_RS07600	0.49	+1.5
1,584,275	+		DZA65_RS07600	0.49	-0.2
1,584,276	-		DZA65_RS07600	0.49	-1.4
1,584,276	-		DZA65_RS07600	0.49	-0.3
1,584,276	-		DZA65_RS07600	0.49	+0.5
1,584,276	-		DZA65_RS07600	0.49	+0.2
1,584,309	+		DZA65_RS07600	0.52	-0.8
1,584,310	-		DZA65_RS07600	0.52	-1.7
1,584,310	-		DZA65_RS07600	0.52	-1.7
1,584,346	-				+0.9
1,584,358	-		DZA65_RS07600	0.57	-0.6
1,584,371	+		DZA65_RS07600	0.58	-2.2
1,584,371	+		DZA65_RS07600	0.58	-0.2
1,584,371	+		DZA65_RS07600	0.58	-0.3
1,584,372	-		DZA65_RS07600	0.58	-1.6
1,584,372	-		DZA65_RS07600	0.58	+1.3
1,584,431	+		DZA65_RS07600	0.64	+0.6
1,584,431	+		DZA65_RS07600	0.64	-1.7
1,584,431	+		DZA65_RS07600	0.64	-0.4
1,584,432	-		DZA65_RS07600	0.64	+0.3
1,584,432	-		DZA65_RS07600	0.64	+1.7
1,584,432	-		DZA65_RS07600	0.64	-0.3
1,584,432	-		DZA65_RS07600	0.64	-1.3
1,584,473	+		DZA65_RS07600	0.69	-0.7
1,584,473	+		DZA65_RS07600	0.69	-0.5
1,584,473	+		DZA65_RS07600	0.69	-0.1
1,584,474	-		DZA65_RS07600	0.69	-1.1
1,584,474	-		DZA65_RS07600	0.69	+0.2
1,584,505	-		DZA65_RS07600	0.72	-0.6
1,584,528	+		DZA65_RS07600	0.74	-0.0
1,584,528	+		DZA65_RS07600	0.74	-1.0
1,584,528	+		DZA65_RS07600	0.74	+0.3
1,584,528	+		DZA65_RS07600	0.74	-0.9
1,584,529	-		DZA65_RS07600	0.74	-0.1
1,584,540	+		DZA65_RS07600	0.75	-0.6
1,584,540	+		DZA65_RS07600	0.75	-0.3
1,584,540	+		DZA65_RS07600	0.75	-1.5
1,584,540	+		DZA65_RS07600	0.75	-0.7
1,584,540	+		DZA65_RS07600	0.75	+0.9
1,584,540	+		DZA65_RS07600	0.75	-2.8
1,584,541	-		DZA65_RS07600	0.75	+0.3
1,584,591	+		DZA65_RS07600	0.80	-1.4
1,584,591	+		DZA65_RS07600	0.80	-0.4
1,584,591	+		DZA65_RS07600	0.80	+0.1
1,584,592	-		DZA65_RS07600	0.80	-0.4
1,584,592	-		DZA65_RS07600	0.80	-0.9
1,584,594	+		DZA65_RS07600	0.81	+0.5
1,584,745	-				-1.0
1,585,117	+		DZA65_RS07605	0.30	-0.7
1,585,166	+		DZA65_RS07605	0.36	-0.8
1,585,166	+		DZA65_RS07605	0.36	+0.4
1,585,166	+		DZA65_RS07605	0.36	-0.6
1,585,167	-		DZA65_RS07605	0.36	-0.6
1,585,167	-		DZA65_RS07605	0.36	+0.1
1,585,167	-		DZA65_RS07605	0.36	+0.4
1,585,167	-		DZA65_RS07605	0.36	+0.3
1,585,167	-		DZA65_RS07605	0.36	+0.3
1,585,167	-		DZA65_RS07605	0.36	-0.7
1,585,168	+		DZA65_RS07605	0.36	+0.1
1,585,168	+		DZA65_RS07605	0.36	-1.2
1,585,168	+		DZA65_RS07605	0.36	-1.1
1,585,168	+		DZA65_RS07605	0.36	-0.3
1,585,168	+		DZA65_RS07605	0.36	-1.7
1,585,168	+		DZA65_RS07605	0.36	+0.4
1,585,168	+		DZA65_RS07605	0.36	-0.3
1,585,168	+		DZA65_RS07605	0.36	-0.7
1,585,169	-		DZA65_RS07605	0.36	-0.6
1,585,169	-		DZA65_RS07605	0.36	-2.1
1,585,169	-		DZA65_RS07605	0.36	-0.2
1,585,169	-		DZA65_RS07605	0.36	-0.6
1,585,349	+		DZA65_RS07605	0.56	-1.0
1,585,363	+		DZA65_RS07605	0.58	+1.3
1,585,363	+		DZA65_RS07605	0.58	-0.9
1,585,364	-		DZA65_RS07605	0.58	+0.7
1,585,630	+		DZA65_RS07605	0.88	+0.1
1,585,630	+		DZA65_RS07605	0.88	-0.1
1,585,630	+		DZA65_RS07605	0.88	-0.9
1,585,630	+		DZA65_RS07605	0.88	-0.2
1,585,631	-		DZA65_RS07605	0.88	-0.2
1,585,631	-		DZA65_RS07605	0.88	-0.1
1,585,631	-		DZA65_RS07605	0.88	-0.4
1,585,631	-		DZA65_RS07605	0.88	-0.6
1,585,644	+		DZA65_RS07605	0.89	-0.9
1,585,645	-		DZA65_RS07605	0.89	+0.3
1,585,674	+				-0.2
1,585,722	+				-1.8
1,585,722	+				-2.5
1,585,723	-				-0.1
1,585,723	-				-0.0
1,585,771	-				+0.2