Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06790

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,408,922	+		DZA65_RS06780	0.31	+0.2
1,408,922	+		DZA65_RS06780	0.31	-0.6
1,408,923	-		DZA65_RS06780	0.32	-0.4
1,408,923	-				+1.0
1,408,931	+		DZA65_RS06780	0.41	+0.1
1,408,931	+		DZA65_RS06780	0.41	-0.8
1,408,942	+		DZA65_RS06780	0.53	-0.6
1,408,942	+		DZA65_RS06780	0.53	+0.5
1,408,942	+		DZA65_RS06780	0.53	-0.0
1,408,943	-		DZA65_RS06780	0.54	-0.5
1,408,957	-		DZA65_RS06780	0.70	+2.2
1,409,011	+				-0.6
1,409,011	+				+0.2
1,409,011	+				+1.6
1,409,011	+				-0.6
1,409,011	+				+0.9
1,409,011	+				-0.1
1,409,011	+				+1.0
1,409,011	+				-1.4
1,409,011	+				+0.8
1,409,011	+				-0.0
1,409,011	+				+0.6
1,409,011	+				+0.5
1,409,011	+				+0.6
1,409,011	+				-0.7
1,409,011	+				+1.1
1,409,012	-				-0.9
1,409,012	-				+0.6
1,409,012	-				-0.6
1,409,012	-				-0.5
1,409,012	-				-0.7
1,409,012	-				-1.9
1,409,012	-				+0.4
1,409,012	-				+0.6
1,409,163	+				+0.2
1,409,181	+				-0.2
1,409,181	+				+0.2
1,409,182	-				-0.0
1,409,182	-				-0.6
1,409,182	-				-0.6
1,409,182	-				-1.1
1,409,182	-				+0.3
1,409,261	+				-0.1
1,409,271	+				-1.1
1,409,294	-				-2.3
1,409,304	+				-0.5
1,409,405	+				-0.9
1,409,405	+				-0.3
1,409,405	+				-0.5
1,409,406	-				+1.5
1,409,406	-				+0.5
1,409,406	-				-0.1
1,409,415	+				-1.7
1,409,415	+				-0.2
1,409,415	+				-0.3
1,409,415	+				+0.1
1,409,415	+				-1.8
1,409,415	+				+1.4
1,409,415	+				-0.0
1,409,415	+				+0.7
1,409,415	+				+1.0
1,409,415	+				+1.0
1,409,415	+				+0.1
1,409,415	+				+0.2
1,409,415	+				-0.3
1,409,416	-				-0.5
1,409,416	-				-1.3
1,409,416	-				-0.5
1,409,416	-				-1.3
1,409,416	-				-1.6
1,409,416	-				+0.6
1,409,416	-				-0.2
1,409,416	-				+0.7
1,409,416	-				+1.1
1,409,416	-				+0.4
1,409,416	-				-0.4
1,409,416	-				-1.6
1,409,416	-				-0.5
1,409,416	-				+0.4
1,409,416	-				+1.0
1,409,416	-				-0.4
1,409,424	+				-2.3
1,409,425	-				+0.4
1,409,425	-				+1.0
1,409,523	+				-0.6
1,409,523	+		DZA65_RS06785	0.57	-0.6
1,409,523	+		DZA65_RS06785	0.57	+1.3
1,409,523	+		DZA65_RS06785	0.57	-0.9
1,409,524	-		DZA65_RS06785	0.57	-0.0
1,409,524	-		DZA65_RS06785	0.57	-0.3
1,409,524	-		DZA65_RS06785	0.57	-2.6
1,409,529	+		DZA65_RS06785	0.59	-0.8
1,409,529	+		DZA65_RS06785	0.59	+0.5
1,409,530	-		DZA65_RS06785	0.60	+0.3
1,409,530	-		DZA65_RS06785	0.60	-1.0
1,409,530	-		DZA65_RS06785	0.60	-0.3
1,409,530	-		DZA65_RS06785	0.60	-1.2
1,409,530	-		DZA65_RS06785	0.60	+1.7
1,409,549	+		DZA65_RS06785	0.69	-0.4
1,409,601	+				-1.8
1,409,735	+				-1.3
1,409,735	+				+1.2
1,409,736	-				-0.2
1,409,736	-				-0.3
1,409,747	+				+0.3
1,409,748	-				+0.3
1,409,748	-				-0.2
1,409,748	-				+1.0
1,409,748	-				+1.6
1,409,788	+				+0.1
1,409,788	+				-0.3
1,409,788	+				-0.1
1,409,789	-				-0.7
1,409,789	-				+0.7
1,409,789	-				-0.2
1,409,789	-				-0.5
1,409,789	-				-0.3
1,409,793	+				+0.5
1,409,793	+				-0.0
1,409,793	+				+1.7
1,409,794	-				+0.6
1,409,794	-				-1.1
1,409,802	-				+0.8
1,409,802	-				-1.2
1,409,815	-				-0.0
1,409,826	+				+0.3
1,409,942	+		DZA65_RS06790	0.12	-0.8
1,409,942	+		DZA65_RS06790	0.12	+1.4
1,409,943	-		DZA65_RS06790	0.12	-0.5
1,409,943	-		DZA65_RS06790	0.12	-0.6
1,410,017	-		DZA65_RS06790	0.19	-0.3
1,410,134	+		DZA65_RS06790	0.32	-0.8
1,410,134	+		DZA65_RS06790	0.32	-1.0
1,410,134	+		DZA65_RS06790	0.32	+0.1
1,410,135	-		DZA65_RS06790	0.32	+0.4
1,410,135	-		DZA65_RS06790	0.32	+0.4
1,410,136	+		DZA65_RS06790	0.32	-1.9
1,410,137	-		DZA65_RS06790	0.32	-0.5
1,410,137	-		DZA65_RS06790	0.32	+0.8
1,410,137	-		DZA65_RS06790	0.32	-2.2
1,410,137	-		DZA65_RS06790	0.32	-0.3
1,410,137	-		DZA65_RS06790	0.32	+0.1
1,410,137	-		DZA65_RS06790	0.32	-0.8
1,410,211	+		DZA65_RS06790	0.40	+1.4
1,410,211	+		DZA65_RS06790	0.40	+0.5
1,410,329	+		DZA65_RS06790	0.52	-0.0
1,410,329	+		DZA65_RS06790	0.52	-0.0
1,410,404	+		DZA65_RS06790	0.60	+0.2
1,410,405	-		DZA65_RS06790	0.60	+0.9
1,410,406	+		DZA65_RS06790	0.60	-0.6
1,410,406	+		DZA65_RS06790	0.60	-1.8
1,410,406	+		DZA65_RS06790	0.60	+0.4
1,410,406	+		DZA65_RS06790	0.60	+0.2
1,410,406	+		DZA65_RS06790	0.60	-0.0
1,410,406	+		DZA65_RS06790	0.60	-0.0
1,410,406	+		DZA65_RS06790	0.60	+0.7
1,410,406	+		DZA65_RS06790	0.60	-0.2
1,410,406	+		DZA65_RS06790	0.60	+0.2
1,410,407	-		DZA65_RS06790	0.60	-0.2
1,410,407	-		DZA65_RS06790	0.60	+0.6
1,410,407	-		DZA65_RS06790	0.60	+0.4
1,410,407	-		DZA65_RS06790	0.60	+0.0
1,410,407	-		DZA65_RS06790	0.60	+0.4
1,410,407	-		DZA65_RS06790	0.60	-0.1
1,410,407	-		DZA65_RS06790	0.60	-0.8
1,410,407	-		DZA65_RS06790	0.60	+1.1
1,410,407	-		DZA65_RS06790	0.60	-1.4
1,410,441	-		DZA65_RS06790	0.64	+0.2
1,410,701	+				-0.3
1,410,701	+				+1.8
1,410,743	+				-0.7
1,410,744	-				+0.2
1,410,744	-				+0.2
1,410,756	-				-1.5
1,410,774	+				-2.2
1,410,774	+				-0.2
1,410,774	+				-0.2
1,410,775	-				-1.6
1,410,788	+				-1.6
1,410,803	-				+0.1
1,410,803	-				-0.2
1,410,803	-				-0.0
1,410,803	-				-1.2
1,410,853	+				-1.2
1,410,854	-				-0.7
1,410,854	-				-0.2
1,411,123	-		DZA65_RS06795	0.21	-0.1
1,411,134	+		DZA65_RS06795	0.22	-0.3
1,411,134	+		DZA65_RS06795	0.22	-1.7
1,411,135	-		DZA65_RS06795	0.22	-0.0
1,411,135	-		DZA65_RS06795	0.22	-0.2
1,411,263	+		DZA65_RS06795	0.31	+0.4
1,411,263	+		DZA65_RS06795	0.31	-0.6
1,411,263	+				+1.0
1,411,263	+		DZA65_RS06795	0.31	-0.2
1,411,263	+		DZA65_RS06795	0.31	-2.7
1,411,263	+		DZA65_RS06795	0.31	+1.0
1,411,263	+		DZA65_RS06795	0.31	-0.0
1,411,263	+		DZA65_RS06795	0.31	+0.8
1,411,263	+		DZA65_RS06795	0.31	-0.3
1,411,263	+		DZA65_RS06795	0.31	-2.0
1,411,263	+		DZA65_RS06795	0.31	+1.1
1,411,263	+		DZA65_RS06795	0.31	-0.0
1,411,263	+		DZA65_RS06795	0.31	-1.0
1,411,263	+		DZA65_RS06795	0.31	-0.3
1,411,263	+		DZA65_RS06795	0.31	-1.2
1,411,263	+		DZA65_RS06795	0.31	-0.4
1,411,263	+		DZA65_RS06795	0.31	+0.8
1,411,263	+		DZA65_RS06795	0.31	-0.8
1,411,263	+		DZA65_RS06795	0.31	-0.4
1,411,263	+		DZA65_RS06795	0.31	+0.0
1,411,264	-		DZA65_RS06795	0.31	-0.4
1,411,264	-		DZA65_RS06795	0.31	-0.4
1,411,264	-		DZA65_RS06795	0.31	-0.1
1,411,264	-		DZA65_RS06795	0.31	-0.3
1,411,264	-		DZA65_RS06795	0.31	-0.3
1,411,264	-		DZA65_RS06795	0.31	+0.1
1,411,264	-		DZA65_RS06795	0.31	-0.3
1,411,264	-		DZA65_RS06795	0.31	-0.6
1,411,264	-		DZA65_RS06795	0.31	+0.4
1,411,264	-		DZA65_RS06795	0.31	+0.3
1,411,264	-		DZA65_RS06795	0.31	-0.6
1,411,264	-		DZA65_RS06795	0.31	-0.2
1,411,264	-		DZA65_RS06795	0.31	-2.0
1,411,264	-		DZA65_RS06795	0.31	+0.3
1,411,264	-		DZA65_RS06795	0.31	+0.2
1,411,264	-		DZA65_RS06795	0.31	-1.2
1,411,264	-		DZA65_RS06795	0.31	+0.1
1,411,264	-		DZA65_RS06795	0.31	+2.6
1,411,264	-		DZA65_RS06795	0.31	+0.2
1,411,264	-		DZA65_RS06795	0.31	+1.2
1,411,264	-		DZA65_RS06795	0.31	+0.6
1,411,275	-		DZA65_RS06795	0.32	-1.1
1,411,485	+		DZA65_RS06795	0.47	+1.2
1,411,485	+		DZA65_RS06795	0.47	-1.4
1,411,486	-		DZA65_RS06795	0.47	-0.6
1,411,486	-		DZA65_RS06795	0.47	-0.8
1,411,486	-		DZA65_RS06795	0.47	+0.2
1,411,486	-		DZA65_RS06795	0.47	-0.2
1,411,486	-		DZA65_RS06795	0.47	+0.4
1,411,486	-		DZA65_RS06795	0.47	+1.3
1,411,486	-		DZA65_RS06795	0.47	+0.2
1,411,486	-		DZA65_RS06795	0.47	+0.7
1,411,555	+		DZA65_RS06795	0.51	-0.5
1,411,585	+		DZA65_RS06795	0.54	+0.7
1,411,635	-		DZA65_RS06795	0.57	+0.2