Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06045

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,247,894	+				-1.4
1,247,894	+				-1.0
1,247,895	-				-0.6
1,248,005	-				+0.0
1,248,039	-				-0.1
1,248,123	+		DZA65_RS06040	0.21	-0.1
1,248,152	+		DZA65_RS06040	0.25	-0.4
1,248,153	-		DZA65_RS06040	0.25	-2.0
1,248,153	-		DZA65_RS06040	0.25	+0.2
1,248,153	-		DZA65_RS06040	0.25	-0.7
1,248,153	-		DZA65_RS06040	0.25	+0.6
1,248,155	+		DZA65_RS06040	0.25	+0.3
1,248,155	+		DZA65_RS06040	0.25	+0.7
1,248,156	-		DZA65_RS06040	0.25	-1.0
1,248,156	-		DZA65_RS06040	0.25	-0.1
1,248,316	-		DZA65_RS06040	0.48	-0.7
1,248,334	+		DZA65_RS06040	0.51	-1.6
1,248,334	+		DZA65_RS06040	0.51	-1.4
1,248,347	+		DZA65_RS06040	0.53	+0.6
1,248,348	-		DZA65_RS06040	0.53	-0.8
1,248,348	-		DZA65_RS06040	0.53	-0.8
1,248,348	-		DZA65_RS06040	0.53	+0.0
1,248,375	+		DZA65_RS06040	0.57	-1.3
1,248,573	-		DZA65_RS06040	0.85	-0.7
1,248,576	+				+2.0
1,248,576	+		DZA65_RS06040	0.86	-0.6
1,248,576	+		DZA65_RS06040	0.86	-0.4
1,248,577	-		DZA65_RS06040	0.86	-2.6
1,248,577	-		DZA65_RS06040	0.86	-0.2
1,248,603	-		DZA65_RS06040	0.90	+0.1
1,248,659	-				-0.6
1,248,659	-				+0.5
1,248,729	+				-1.3
1,248,729	+				-1.6
1,248,729	+				-1.0
1,248,730	-				+0.5
1,248,730	-				+0.4
1,248,738	+				-2.0
1,248,738	+				-0.3
1,248,739	-				-0.8
1,248,743	+				-0.1
1,248,744	-				+0.3
1,248,744	-				+1.2
1,248,795	-				+0.4
1,248,847	-				-0.1
1,248,881	+				+0.2
1,248,881	+				+0.0
1,248,881	+				-0.0
1,248,881	+				-0.2
1,248,881	+				-0.3
1,248,882	-				-0.9
1,248,882	-				+0.4
1,248,882	-				-0.0
1,248,882	-				+0.1
1,248,882	-				+1.0
1,248,882	-				+0.4
1,248,882	-				-0.3
1,248,882	-				-1.7
1,248,882	-				+0.0
1,248,884	+				+0.1
1,248,884	+				+0.8
1,248,884	+				-0.2
1,248,884	+				+1.0
1,248,884	+				+0.0
1,248,884	+				+0.8
1,248,885	-				-0.8
1,248,885	-				-0.1
1,248,885	-				+0.6
1,248,885	-				-0.9
1,248,897	-				-0.3
1,249,048	-		DZA65_RS06045	0.24	+1.0
1,249,069	+		DZA65_RS06045	0.26	+0.4
1,249,069	+		DZA65_RS06045	0.26	+0.0
1,249,167	+		DZA65_RS06045	0.35	-0.4
1,249,167	+		DZA65_RS06045	0.35	+0.6
1,249,167	+		DZA65_RS06045	0.35	+0.4
1,249,184	+		DZA65_RS06045	0.37	+0.8
1,249,193	+		DZA65_RS06045	0.37	+0.8
1,249,193	+		DZA65_RS06045	0.37	+0.3
1,249,194	-		DZA65_RS06045	0.38	-0.2
1,249,194	-		DZA65_RS06045	0.38	+0.8
1,249,194	-		DZA65_RS06045	0.38	-0.1
1,249,194	-		DZA65_RS06045	0.38	+0.5
1,249,194	-		DZA65_RS06045	0.38	+0.9
1,249,247	+		DZA65_RS06045	0.43	+0.0
1,249,256	+		DZA65_RS06045	0.43	-1.3
1,249,256	+		DZA65_RS06045	0.43	+0.6
1,249,257	-		DZA65_RS06045	0.43	-1.8
1,249,307	+		DZA65_RS06045	0.48	-1.0
1,249,307	+		DZA65_RS06045	0.48	+0.6
1,249,307	+		DZA65_RS06045	0.48	+0.4
1,249,308	-		DZA65_RS06045	0.48	+0.4
1,249,308	-		DZA65_RS06045	0.48	+1.3
1,249,346	+		DZA65_RS06045	0.52	-0.1
1,249,346	+		DZA65_RS06045	0.52	+0.8
1,249,346	+		DZA65_RS06045	0.52	-1.6
1,249,368	+		DZA65_RS06045	0.54	-0.8
1,249,369	-		DZA65_RS06045	0.54	-1.2
1,249,400	+		DZA65_RS06045	0.57	-2.4
1,249,400	+		DZA65_RS06045	0.57	+0.0
1,249,401	-		DZA65_RS06045	0.57	+1.4
1,249,401	-		DZA65_RS06045	0.57	-0.6
1,249,418	+		DZA65_RS06045	0.59	+0.0
1,249,418	+		DZA65_RS06045	0.59	-0.6
1,249,418	+		DZA65_RS06045	0.59	-0.3
1,249,418	+				-1.0
1,249,418	+		DZA65_RS06045	0.59	-0.6
1,249,418	+		DZA65_RS06045	0.59	-1.8
1,249,418	+		DZA65_RS06045	0.59	+1.0
1,249,418	+		DZA65_RS06045	0.59	-2.0
1,249,418	+		DZA65_RS06045	0.59	-0.7
1,249,419	-		DZA65_RS06045	0.59	-1.8
1,249,419	-		DZA65_RS06045	0.59	+0.7
1,249,419	-		DZA65_RS06045	0.59	+1.0
1,249,419	-		DZA65_RS06045	0.59	-0.4
1,249,419	-		DZA65_RS06045	0.59	+0.0
1,249,419	-		DZA65_RS06045	0.59	-0.4
1,249,460	+		DZA65_RS06045	0.63	-0.0
1,249,460	+		DZA65_RS06045	0.63	+1.3
1,249,460	+		DZA65_RS06045	0.63	-0.9
1,249,460	+		DZA65_RS06045	0.63	+1.0
1,249,460	+		DZA65_RS06045	0.63	-0.0
1,249,460	+		DZA65_RS06045	0.63	-0.1
1,249,460	+		DZA65_RS06045	0.63	+1.3
1,249,461	-		DZA65_RS06045	0.63	-0.7
1,249,461	-		DZA65_RS06045	0.63	+2.0
1,249,461	-		DZA65_RS06045	0.63	-1.8
1,249,461	-		DZA65_RS06045	0.63	+0.4
1,249,461	-		DZA65_RS06045	0.63	-0.6
1,249,461	-		DZA65_RS06045	0.63	-0.3
1,249,461	-		DZA65_RS06045	0.63	-0.4
1,249,503	-		DZA65_RS06045	0.67	+1.4
1,249,503	-		DZA65_RS06045	0.67	+0.9
1,249,503	-		DZA65_RS06045	0.67	+0.4
1,249,536	+		DZA65_RS06045	0.70	-0.1
1,249,536	+		DZA65_RS06045	0.70	+0.3
1,249,536	+		DZA65_RS06045	0.70	+0.4
1,249,558	-		DZA65_RS06045	0.72	-2.0
1,249,558	-		DZA65_RS06045	0.72	-1.3
1,249,605	+		DZA65_RS06045	0.77	-1.5
1,249,668	-		DZA65_RS06045	0.83	-1.4
1,249,742	+		DZA65_RS06045	0.90	+0.3
1,249,742	+		DZA65_RS06045	0.90	+0.0
1,249,743	-		DZA65_RS06045	0.90	-0.1
1,249,754	+				-1.0
1,249,835	-				+0.3
1,249,871	+				+0.7
1,249,871	+				-0.2
1,249,871	+				+0.5
1,249,871	+				+0.4
1,249,871	+				-0.3
1,249,872	-				+0.5
1,249,878	+				+0.0
1,249,878	+				-1.3
1,249,878	+				+0.4
1,249,878	+				-0.8
1,249,878	+				-0.6
1,249,878	+				+1.8
1,249,878	+				+0.3
1,249,878	+				+0.8
1,249,879	-				+0.0
1,249,879	-				+1.0
1,249,879	-				+1.4
1,249,879	-				+0.0
1,249,879	-				+1.0
1,249,943	-				-0.6
1,249,943	-				-2.9
1,249,943	-				+0.8
1,250,049	+				-0.4
1,250,049	+				+0.8
1,250,049	+				+0.6
1,250,050	-				-0.3
1,250,050	-				+0.3
1,250,050	-				-1.7
1,250,050	-				-0.5
1,250,079	+		DZA65_RS06050	0.11	-0.3
1,250,167	+		DZA65_RS06050	0.30	+0.2
1,250,168	-		DZA65_RS06050	0.30	+0.5
1,250,168	-		DZA65_RS06050	0.30	-0.1
1,250,318	-		DZA65_RS06050	0.63	+1.4
1,250,318	-		DZA65_RS06050	0.63	+0.4
1,250,335	+		DZA65_RS06050	0.66	-1.3
1,250,335	+		DZA65_RS06050	0.66	-0.4
1,250,336	-		DZA65_RS06050	0.66	-2.3
1,250,336	-		DZA65_RS06050	0.66	+0.4
1,250,336	-		DZA65_RS06050	0.66	+0.2
1,250,336	-		DZA65_RS06050	0.66	+0.0
1,250,336	-		DZA65_RS06050	0.66	+0.5
1,250,341	+		DZA65_RS06050	0.68	+0.6
1,250,341	+		DZA65_RS06050	0.68	-2.0
1,250,342	-		DZA65_RS06050	0.68	-0.9
1,250,342	-		DZA65_RS06050	0.68	-0.3
1,250,342	-		DZA65_RS06050	0.68	+0.7
1,250,342	-		DZA65_RS06050	0.68	-2.6
1,250,345	+		DZA65_RS06050	0.68	+0.4
1,250,345	+		DZA65_RS06050	0.68	-0.3
1,250,345	+		DZA65_RS06050	0.68	+1.0
1,250,346	-		DZA65_RS06050	0.69	+0.4
1,250,346	-		DZA65_RS06050	0.69	-0.2
1,250,346	-		DZA65_RS06050	0.69	-0.2
1,250,367	+		DZA65_RS06050	0.73	+1.3
1,250,377	+		DZA65_RS06050	0.75	+1.0
1,250,378	-		DZA65_RS06050	0.76	-0.1
1,250,430	+		DZA65_RS06050	0.87	-0.8
1,250,430	+		DZA65_RS06050	0.87	-0.2
1,250,430	+		DZA65_RS06050	0.87	-0.5
1,250,430	+		DZA65_RS06050	0.87	-0.4
1,250,430	+		DZA65_RS06050	0.87	+0.1
1,250,430	+		DZA65_RS06050	0.87	-0.1
1,250,431	-		DZA65_RS06050	0.87	+0.1
1,250,431	-		DZA65_RS06050	0.87	-0.4
1,250,431	-		DZA65_RS06050	0.87	-0.6
1,250,431	-		DZA65_RS06050	0.87	+1.0
1,250,431	-		DZA65_RS06050	0.87	-0.2
1,250,446	-				+0.7
1,250,480	+				+0.6
1,250,486	+				+0.5
1,250,486	+				+1.5
1,250,504	+				-0.3
1,250,511	+				-0.3
1,250,511	+				-0.1
1,250,512	-				-0.0
1,250,512	-				+0.2
1,250,512	-				+0.5
1,250,512	-				+0.1
1,250,515	+				-0.7
1,250,515	+				-0.7
1,250,515	+				+1.0
1,250,515	+				+1.0
1,250,516	-				+0.9
1,250,516	-				+1.0
1,250,516	-				+0.6
1,250,516	-				-0.8
1,250,516	-				+0.5
1,250,518	-				-1.3
1,250,518	-				-0.3
1,250,520	+				-0.4
1,250,521	-				-0.8
1,250,521	-				-0.4
1,250,521	-				+0.4
1,250,521	-				+0.3
1,250,529	+				+0.1
1,250,540	-				-0.2
1,250,547	+				+1.0
1,250,551	+				-1.9
1,250,551	+				+0.1
1,250,587	+				-0.3
1,250,588	-				-0.8
1,250,595	+				-0.1
1,250,595	+				+1.4
1,250,596	-				-0.3
1,250,596	-				-2.6
1,250,596	-				+0.5
1,250,596	-				-0.5
1,250,734	+				+0.9
1,250,734	+				-0.2
1,250,778	+		DZA65_RS06055	0.12	+0.6
1,250,778	+		DZA65_RS06055	0.12	+0.1
1,250,778	+		DZA65_RS06055	0.12	+0.5
1,250,778	+		DZA65_RS06055	0.12	+0.0
1,250,779	-		DZA65_RS06055	0.12	-1.2
1,250,779	-		DZA65_RS06055	0.12	-2.3
1,250,779	-		DZA65_RS06055	0.12	-0.5
1,250,779	-		DZA65_RS06055	0.12	+0.3
1,250,779	-		DZA65_RS06055	0.12	-1.1
1,250,790	+		DZA65_RS06055	0.13	+1.0
1,250,791	-		DZA65_RS06055	0.13	-0.6