Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05565

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,144,204	+		DZA65_RS05555	0.21	+0.8
1,144,205	-		DZA65_RS05555	0.22	-1.7
1,144,233	+		DZA65_RS05555	0.36	-0.6
1,144,234	-		DZA65_RS05555	0.36	+0.2
1,144,234	-		DZA65_RS05555	0.36	-0.5
1,144,234	-		DZA65_RS05555	0.36	-1.1
1,144,294	-		DZA65_RS05555	0.66	-0.9
1,144,295	+		DZA65_RS05555	0.67	+0.2
1,144,296	-		DZA65_RS05555	0.67	-0.1
1,144,296	-		DZA65_RS05555	0.67	-0.5
1,144,296	-		DZA65_RS05555	0.67	-1.1
1,144,339	-		DZA65_RS05555	0.89	-0.9
1,144,339	-		DZA65_RS05555	0.89	-1.9
1,144,341	+		DZA65_RS05555	0.90	+1.3
1,144,341	+		DZA65_RS05555	0.90	-0.4
1,144,341	+		DZA65_RS05555	0.90	+0.5
1,144,341	+		DZA65_RS05555	0.90	-0.6
1,144,341	+		DZA65_RS05555	0.90	+0.8
1,144,342	-				-0.4
1,144,342	-				+0.1
1,144,342	-				-0.4
1,144,351	+				-1.2
1,144,351	+				-0.2
1,144,351	+				+0.1
1,144,352	-				-0.9
1,144,352	-				+0.9
1,144,352	-				-0.2
1,144,352	-				+0.9
1,144,362	-				-0.2
1,144,362	-				+1.0
1,144,364	+				+0.1
1,144,364	+				-0.9
1,144,364	+				-0.2
1,144,364	+				-0.6
1,144,365	-				-3.2
1,144,374	+				-0.2
1,144,374	+				-0.6
1,144,381	+				-0.1
1,144,414	+				+0.2
1,144,415	-				+0.1
1,144,430	+				-0.8
1,144,430	+				+0.4
1,144,430	+				-1.2
1,144,430	+				+0.3
1,144,431	-				+0.0
1,144,431	-				-0.3
1,144,431	-				+0.8
1,144,431	-				-1.2
1,144,431	-				-1.3
1,144,431	-				-0.5
1,144,431	-				-0.3
1,144,444	+				-0.0
1,144,468	-				-0.1
1,144,468	-				-0.7
1,144,469	+				-0.2
1,144,469	+				-1.6
1,144,469	+				+0.2
1,144,469	+				-0.1
1,144,469	+				-0.9
1,144,469	+				+0.0
1,144,469	+				+0.1
1,144,469	+				+0.6
1,144,469	+				-0.2
1,144,470	-				-0.8
1,144,470	-				-1.7
1,144,470	-				+0.3
1,144,470	-				+0.2
1,144,470	-				-1.0
1,144,470	-				+0.5
1,144,474	+				+0.1
1,144,474	+				+0.2
1,144,474	+				-0.9
1,144,475	-				+0.3
1,144,484	+				+0.3
1,144,497	+				+0.2
1,144,498	-				-0.2
1,144,510	+				-0.9
1,144,510	+				+0.2
1,144,510	+				-1.5
1,144,510	+				+0.4
1,144,511	-				-0.1
1,144,511	-				-2.2
1,144,511	-				-0.5
1,144,511	-				-0.5
1,144,522	+				-0.2
1,144,553	+				-1.1
1,144,553	+				-0.1
1,144,553	+				+0.1
1,144,553	+				+1.1
1,144,553	+				-0.7
1,144,553	+				+0.2
1,144,553	+				-0.5
1,144,554	-				-0.2
1,144,554	-				+0.1
1,144,554	-				+0.3
1,144,554	-				-0.6
1,144,554	-				+0.2
1,144,554	-				-0.5
1,144,554	-				-0.2
1,144,554	-				+0.6
1,144,554	-				-0.0
1,144,554	-				+0.8
1,144,554	-				+0.1
1,144,554	-				-0.9
1,144,569	+				-0.9
1,144,569	+				-2.0
1,144,570	-				-0.6
1,144,585	+				+1.1
1,144,585	+				+0.5
1,144,586	-				-0.1
1,144,590	-				+0.2
1,144,608	+				-0.1
1,144,609	-				-0.5
1,144,609	-				+0.1
1,144,623	-				+0.7
1,144,624	+				-0.1
1,144,624	+				-1.2
1,144,625	-				+1.1
1,144,772	-		DZA65_RS05560	0.31	-1.7
1,144,839	+		DZA65_RS05560	0.43	+0.6
1,144,911	+		DZA65_RS05560	0.56	-2.1
1,144,911	+		DZA65_RS05560	0.56	-0.2
1,144,911	+		DZA65_RS05560	0.56	-0.9
1,144,911	+		DZA65_RS05560	0.56	-0.2
1,144,911	+		DZA65_RS05560	0.56	+0.8
1,144,911	+				+0.3
1,144,911	+		DZA65_RS05560	0.56	+1.4
1,144,911	+		DZA65_RS05560	0.56	+0.7
1,144,911	+		DZA65_RS05560	0.56	+0.4
1,144,911	+		DZA65_RS05560	0.56	-0.9
1,144,911	+		DZA65_RS05560	0.56	-0.2
1,144,911	+		DZA65_RS05560	0.56	-0.0
1,144,911	+		DZA65_RS05560	0.56	-0.7
1,144,911	+		DZA65_RS05560	0.56	+0.6
1,144,911	+		DZA65_RS05560	0.56	-0.1
1,144,911	+		DZA65_RS05560	0.56	-0.9
1,144,911	+		DZA65_RS05560	0.56	-1.3
1,144,911	+		DZA65_RS05560	0.56	-1.5
1,144,911	+		DZA65_RS05560	0.56	+0.8
1,144,911	+		DZA65_RS05560	0.56	+0.1
1,144,912	-		DZA65_RS05560	0.57	+0.3
1,144,912	-		DZA65_RS05560	0.57	+0.1
1,144,912	-		DZA65_RS05560	0.57	-0.4
1,144,912	-		DZA65_RS05560	0.57	-0.1
1,144,912	-		DZA65_RS05560	0.57	-0.5
1,144,912	-		DZA65_RS05560	0.57	-0.5
1,144,912	-		DZA65_RS05560	0.57	-0.9
1,144,912	-		DZA65_RS05560	0.57	-0.5
1,144,912	-		DZA65_RS05560	0.57	-1.0
1,144,912	-		DZA65_RS05560	0.57	-0.7
1,144,912	-		DZA65_RS05560	0.57	-0.8
1,144,912	-		DZA65_RS05560	0.57	+0.3
1,144,912	-		DZA65_RS05560	0.57	-0.1
1,144,912	-		DZA65_RS05560	0.57	-1.5
1,144,912	-		DZA65_RS05560	0.57	-0.1
1,144,912	-		DZA65_RS05560	0.57	-1.0
1,144,912	-		DZA65_RS05560	0.57	+0.5
1,144,912	-		DZA65_RS05560	0.57	-1.1
1,144,912	-		DZA65_RS05560	0.57	+0.7
1,144,912	-		DZA65_RS05560	0.57	-0.3
1,144,912	-		DZA65_RS05560	0.57	+0.2
1,144,913	+		DZA65_RS05560	0.57	-0.2
1,144,913	+		DZA65_RS05560	0.57	-0.1
1,144,913	+		DZA65_RS05560	0.57	-0.2
1,144,913	+		DZA65_RS05560	0.57	+0.7
1,144,913	+		DZA65_RS05560	0.57	-0.2
1,144,913	+		DZA65_RS05560	0.57	-2.1
1,144,913	+		DZA65_RS05560	0.57	-0.2
1,144,914	-		DZA65_RS05560	0.57	+0.6
1,144,914	-		DZA65_RS05560	0.57	+0.9
1,144,914	-		DZA65_RS05560	0.57	+0.1
1,144,914	-		DZA65_RS05560	0.57	+0.2
1,144,914	-		DZA65_RS05560	0.57	+0.5
1,144,914	-		DZA65_RS05560	0.57	+0.6
1,144,914	-		DZA65_RS05560	0.57	-0.4
1,144,914	-		DZA65_RS05560	0.57	-0.2
1,144,919	+		DZA65_RS05560	0.58	-1.5
1,144,919	+		DZA65_RS05560	0.58	-0.7
1,144,920	-		DZA65_RS05560	0.58	-0.7
1,145,055	+		DZA65_RS05560	0.83	-0.8
1,145,055	+		DZA65_RS05560	0.83	-0.9
1,145,055	+		DZA65_RS05560	0.83	+1.1
1,145,056	-		DZA65_RS05560	0.83	-1.1
1,145,062	+		DZA65_RS05560	0.84	+0.8
1,145,062	+		DZA65_RS05560	0.84	-1.9
1,145,062	+		DZA65_RS05560	0.84	+0.1
1,145,063	-		DZA65_RS05560	0.84	-0.7
1,145,063	-		DZA65_RS05560	0.84	-1.6
1,145,080	+		DZA65_RS05560	0.87	+0.7
1,145,080	+		DZA65_RS05560	0.87	+0.5
1,145,080	+		DZA65_RS05560	0.87	+0.5
1,145,080	+		DZA65_RS05560	0.87	-0.5
1,145,080	+		DZA65_RS05560	0.87	+1.3
1,145,080	+		DZA65_RS05560	0.87	+0.7
1,145,080	+		DZA65_RS05560	0.87	-0.1
1,145,081	-		DZA65_RS05560	0.87	+0.1
1,145,081	-		DZA65_RS05560	0.87	-0.8
1,145,081	-		DZA65_RS05560	0.87	-0.3
1,145,081	-		DZA65_RS05560	0.87	-1.4
1,145,105	-				-1.4
1,145,125	+				+0.5
1,145,126	-				+1.1
1,145,126	-				-1.1
1,145,191	+				-0.4
1,145,192	-				-0.1
1,145,192	-				+0.3
1,145,233	+				+0.3
1,145,233	+				-0.3
1,145,233	+				+1.4
1,145,234	-				-2.2
1,145,234	-				+0.3
1,145,304	+		DZA65_RS05565	0.18	-0.1
1,145,304	+		DZA65_RS05565	0.18	+0.1
1,145,304	+		DZA65_RS05565	0.18	+0.3
1,145,304	+		DZA65_RS05565	0.18	+0.5
1,145,305	-		DZA65_RS05565	0.18	-0.5
1,145,305	-		DZA65_RS05565	0.18	-0.9
1,145,305	-		DZA65_RS05565	0.18	-0.9
1,145,305	-		DZA65_RS05565	0.18	+0.6
1,145,305	-		DZA65_RS05565	0.18	-0.6
1,145,305	-		DZA65_RS05565	0.18	-0.6
1,145,315	+		DZA65_RS05565	0.20	-0.6
1,145,316	-		DZA65_RS05565	0.20	+0.8
1,145,316	-		DZA65_RS05565	0.20	-0.2
1,145,348	+		DZA65_RS05565	0.25	+0.7
1,145,470	+		DZA65_RS05565	0.45	-0.2
1,145,485	-		DZA65_RS05565	0.47	-0.2
1,145,499	+				+0.1
1,145,500	-		DZA65_RS05565	0.50	-0.4
1,145,500	-		DZA65_RS05565	0.50	-0.3
1,145,595	-		DZA65_RS05565	0.66	-0.6
1,145,595	-		DZA65_RS05565	0.66	-0.7
1,145,604	-		DZA65_RS05565	0.67	-0.5
1,145,648	+		DZA65_RS05565	0.74	-0.2
1,145,649	-		DZA65_RS05565	0.74	-0.3
1,145,679	+		DZA65_RS05565	0.79	+0.8
1,145,679	+		DZA65_RS05565	0.79	-0.8
1,145,679	+		DZA65_RS05565	0.79	+0.6
1,145,679	+		DZA65_RS05565	0.79	-0.8
1,145,679	+		DZA65_RS05565	0.79	-0.3
1,145,679	+		DZA65_RS05565	0.79	-0.5
1,145,679	+		DZA65_RS05565	0.79	-1.1
1,145,679	+		DZA65_RS05565	0.79	-0.5
1,145,680	-		DZA65_RS05565	0.79	-2.2
1,145,680	-		DZA65_RS05565	0.79	-1.2
1,145,680	-		DZA65_RS05565	0.79	+0.3
1,145,680	-		DZA65_RS05565	0.79	-2.5
1,145,681	+		DZA65_RS05565	0.80	-1.2
1,145,681	+		DZA65_RS05565	0.80	-0.1
1,145,681	+		DZA65_RS05565	0.80	-0.6
1,145,682	-		DZA65_RS05565	0.80	-0.6
1,145,682	-		DZA65_RS05565	0.80	-0.7
1,145,682	-		DZA65_RS05565	0.80	+1.4
1,145,682	-		DZA65_RS05565	0.80	+0.3
1,145,754	+				-0.5
1,145,754	+				-1.2
1,145,754	+				+0.9
1,145,754	+				-0.9
1,145,754	+				-0.8
1,145,754	+				+0.1
1,145,755	-				-0.3
1,145,755	-				-1.5
1,145,755	-				-1.0
1,145,755	-				+0.9
1,145,755	-				+0.7
1,145,755	-				+0.6
1,145,755	-				+1.1
1,145,755	-				-0.2
1,145,755	-				+0.1
1,145,757	+				+0.0
1,145,758	-				-0.2
1,145,758	-				-1.2
1,145,758	-				-0.0
1,145,758	-				-0.1
1,145,758	-				+0.3
1,145,758	-				+0.4
1,145,763	+				-1.9
1,145,764	-				+0.2
1,145,764	-				-0.9
1,145,764	-				+0.4
1,145,786	+				-1.2
1,145,787	-				-1.1
1,145,836	+				-0.7
1,145,836	+				+0.2
1,145,836	+				-0.6
1,145,836	+				+1.1
1,145,836	+				+1.1
1,145,836	+				+0.0
1,145,836	+				-0.7
1,145,890	+				-1.0
1,145,890	+				-1.4
1,145,891	-				+0.8
1,145,891	-				-0.2
1,145,891	-				-0.3
1,145,891	-				-0.6
1,145,891	-				+1.2
1,145,891	-				-0.3
1,145,909	+				-0.7
1,145,909	+				-0.8
1,145,909	+				-1.2
1,145,910	-				-0.0
1,145,910	-				-0.2
1,145,910	-				+0.1
1,145,910	-				+0.1
1,145,910	-				-1.0
1,145,911	+				-0.6
1,145,911	+				-0.7
1,145,911	+				+1.0
1,145,911	+				+1.1
1,145,911	+				+0.0
1,145,911	+				+0.6
1,145,911	+				-0.2
1,145,912	-				-0.1
1,145,912	-				-0.5
1,145,912	-				-1.2
1,145,912	-				-0.0
1,145,912	-				-0.9
1,145,912	-				-0.7
1,145,912	-				-0.1
1,145,912	-				+0.6
1,145,912	-				+1.5
1,145,912	-				-2.2
1,146,143	+				-0.8
1,146,144	-				-0.5
1,146,144	-				-0.3
1,146,173	+		DZA65_RS05570	0.11	+0.6
1,146,174	-		DZA65_RS05570	0.11	-0.1
1,146,174	-		DZA65_RS05570	0.11	+0.1
1,146,343	+		DZA65_RS05570	0.18	-0.0
1,146,343	+		DZA65_RS05570	0.18	-1.2
1,146,343	+		DZA65_RS05570	0.18	-0.6
1,146,343	+		DZA65_RS05570	0.18	+1.4
1,146,343	+		DZA65_RS05570	0.18	-1.5
1,146,344	-		DZA65_RS05570	0.18	+0.1
1,146,379	-		DZA65_RS05570	0.19	+0.7
1,146,491	+		DZA65_RS05570	0.24	-0.5
1,146,491	+		DZA65_RS05570	0.24	-0.2
1,146,492	-		DZA65_RS05570	0.24	-0.2
1,146,532	+		DZA65_RS05570	0.25	+0.2
1,146,532	+		DZA65_RS05570	0.25	-0.3
1,146,532	+		DZA65_RS05570	0.25	-1.0
1,146,532	+		DZA65_RS05570	0.25	-0.3
1,146,533	-		DZA65_RS05570	0.25	-1.5
1,146,533	-		DZA65_RS05570	0.25	+0.9
1,146,533	-		DZA65_RS05570	0.25	-0.1
1,146,533	-		DZA65_RS05570	0.25	-0.8
1,146,533	-				-0.5
1,146,533	-		DZA65_RS05570	0.25	+0.3
1,146,533	-		DZA65_RS05570	0.25	-0.8
1,146,533	-		DZA65_RS05570	0.25	-0.3
1,146,561	+		DZA65_RS05570	0.26	+0.5
1,146,580	+		DZA65_RS05570	0.27	+0.2
1,146,580	+		DZA65_RS05570	0.27	+0.6
1,146,580	+		DZA65_RS05570	0.27	+0.8
1,146,580	+		DZA65_RS05570	0.27	+0.3
1,146,580	+		DZA65_RS05570	0.27	-0.9
1,146,581	-		DZA65_RS05570	0.27	-0.8
1,146,581	-		DZA65_RS05570	0.27	+1.2
1,146,581	-		DZA65_RS05570	0.27	-0.0
1,146,581	-		DZA65_RS05570	0.27	-0.5
1,146,581	-		DZA65_RS05570	0.27	-1.2
1,146,581	-		DZA65_RS05570	0.27	+0.2
1,146,659	+		DZA65_RS05570	0.30	-0.5
1,146,659	+		DZA65_RS05570	0.30	-0.9
1,146,660	-		DZA65_RS05570	0.30	-0.4
1,146,660	-		DZA65_RS05570	0.30	-3.1
1,146,708	-		DZA65_RS05570	0.32	-0.7
1,146,748	+		DZA65_RS05570	0.34	-0.1
1,146,748	+		DZA65_RS05570	0.34	-0.4
1,146,748	+		DZA65_RS05570	0.34	-0.3
1,146,749	-		DZA65_RS05570	0.34	-1.2
1,146,749	-		DZA65_RS05570	0.34	-0.2
1,146,749	-		DZA65_RS05570	0.34	+0.8
1,146,749	-		DZA65_RS05570	0.34	+0.3
1,146,749	-		DZA65_RS05570	0.34	-0.3
1,146,749	-		DZA65_RS05570	0.34	-0.3
1,146,749	-		DZA65_RS05570	0.34	-0.1