Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03310 and DZA65_RS03315 are separated by 89 nucleotides DZA65_RS03315 and DZA65_RS03320 are separated by 99 nucleotides DZA65_RS03320 and DZA65_RS03325 are separated by 122 nucleotides
DZA65_RS03310: DZA65_RS03310 - thymidine phosphorylase, at 700,799 to 702,130
_RS03310
DZA65_RS03315: DZA65_RS03315 - phosphopentomutase, at 702,220 to 703,443
_RS03315
DZA65_RS03320: DZA65_RS03320 - purine-nucleoside phosphorylase, at 703,543 to 704,268
_RS03320
DZA65_RS03325: DZA65_RS03325 - ATP-grasp domain-containing protein, at 704,391 to 705,629
_RS03325
Position (kb) 702
703
704 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 701.300 kb on + strand, within DZA65_RS03310 at 701.300 kb on + strand, within DZA65_RS03310 at 701.407 kb on + strand, within DZA65_RS03310 at 701.407 kb on + strand, within DZA65_RS03310 at 701.408 kb on - strand, within DZA65_RS03310 at 701.428 kb on + strand, within DZA65_RS03310 at 701.438 kb on + strand, within DZA65_RS03310 at 701.438 kb on + strand, within DZA65_RS03310 at 701.438 kb on + strand, within DZA65_RS03310 at 701.438 kb on + strand, within DZA65_RS03310 at 701.438 kb on + strand, within DZA65_RS03310 at 701.438 kb on + strand, within DZA65_RS03310 at 701.438 kb on + strand, within DZA65_RS03310 at 701.438 kb on + strand, within DZA65_RS03310 at 701.438 kb on + strand, within DZA65_RS03310 at 701.439 kb on - strand, within DZA65_RS03310 at 701.439 kb on - strand, within DZA65_RS03310 at 701.439 kb on - strand, within DZA65_RS03310 at 701.439 kb on - strand, within DZA65_RS03310 at 701.485 kb on + strand, within DZA65_RS03310 at 701.485 kb on + strand, within DZA65_RS03310 at 701.486 kb on - strand, within DZA65_RS03310 at 701.734 kb on - strand, within DZA65_RS03310 at 701.734 kb on - strand, within DZA65_RS03310 at 701.734 kb on - strand, within DZA65_RS03310 at 701.734 kb on - strand, within DZA65_RS03310 at 701.786 kb on + strand, within DZA65_RS03310 at 701.786 kb on + strand, within DZA65_RS03310 at 701.787 kb on - strand, within DZA65_RS03310 at 701.791 kb on + strand, within DZA65_RS03310 at 701.791 kb on + strand, within DZA65_RS03310 at 701.792 kb on - strand, within DZA65_RS03310 at 701.792 kb on - strand, within DZA65_RS03310 at 701.792 kb on - strand, within DZA65_RS03310 at 701.792 kb on - strand, within DZA65_RS03310 at 701.792 kb on - strand, within DZA65_RS03310 at 701.792 kb on - strand, within DZA65_RS03310 at 701.795 kb on + strand, within DZA65_RS03310 at 701.795 kb on + strand, within DZA65_RS03310 at 701.795 kb on + strand, within DZA65_RS03310 at 701.795 kb on + strand, within DZA65_RS03310 at 701.795 kb on + strand, within DZA65_RS03310 at 701.795 kb on + strand, within DZA65_RS03310 at 701.795 kb on + strand, within DZA65_RS03310 at 701.795 kb on + strand, within DZA65_RS03310 at 701.795 kb on + strand, within DZA65_RS03310 at 701.796 kb on - strand, within DZA65_RS03310 at 701.796 kb on - strand, within DZA65_RS03310 at 701.796 kb on - strand, within DZA65_RS03310 at 701.796 kb on - strand, within DZA65_RS03310 at 701.796 kb on - strand, within DZA65_RS03310 at 701.796 kb on - strand, within DZA65_RS03310 at 701.796 kb on - strand, within DZA65_RS03310 at 701.796 kb on - strand, within DZA65_RS03310 at 701.796 kb on - strand, within DZA65_RS03310 at 701.796 kb on - strand, within DZA65_RS03310 at 701.796 kb on - strand, within DZA65_RS03310 at 701.796 kb on - strand, within DZA65_RS03310 at 701.923 kb on + strand, within DZA65_RS03310 at 701.924 kb on - strand, within DZA65_RS03310 at 702.128 kb on + strand at 702.129 kb on - strand at 702.135 kb on - strand at 702.153 kb on + strand at 702.153 kb on + strand at 702.154 kb on - strand at 702.157 kb on + strand at 702.157 kb on + strand at 702.157 kb on + strand at 702.157 kb on + strand at 702.157 kb on + strand at 702.157 kb on + strand at 702.157 kb on + strand at 702.157 kb on + strand at 702.157 kb on + strand at 702.157 kb on + strand at 702.157 kb on + strand at 702.158 kb on - strand at 702.158 kb on - strand at 702.170 kb on + strand at 702.177 kb on + strand at 702.181 kb on + strand at 702.181 kb on + strand at 702.181 kb on + strand at 702.181 kb on + strand at 702.182 kb on - strand at 702.182 kb on - strand at 702.182 kb on - strand at 702.182 kb on - strand at 702.182 kb on - strand at 702.183 kb on + strand at 702.183 kb on + strand at 702.183 kb on + strand at 702.183 kb on + strand at 702.183 kb on + strand at 702.184 kb on - strand at 702.184 kb on - strand at 702.184 kb on - strand at 702.184 kb on - strand at 702.184 kb on - strand at 702.184 kb on - strand at 702.184 kb on - strand at 702.184 kb on - strand at 702.184 kb on - strand at 702.184 kb on - strand at 702.196 kb on - strand at 702.213 kb on + strand at 702.213 kb on + strand at 702.213 kb on + strand at 702.214 kb on - strand at 702.214 kb on - strand at 702.217 kb on + strand at 702.217 kb on + strand at 702.217 kb on + strand at 702.217 kb on + strand at 702.218 kb on - strand at 702.218 kb on - strand at 702.234 kb on + strand at 702.234 kb on + strand at 702.234 kb on + strand at 702.234 kb on + strand at 702.235 kb on - strand at 702.235 kb on - strand at 702.235 kb on - strand at 702.235 kb on - strand at 702.235 kb on - strand at 702.235 kb on - strand at 702.235 kb on - strand at 702.238 kb on - strand at 702.238 kb on - strand at 702.307 kb on - strand at 702.307 kb on - strand at 702.462 kb on + strand, within DZA65_RS03315 at 702.462 kb on + strand, within DZA65_RS03315 at 702.475 kb on + strand, within DZA65_RS03315 at 702.724 kb on + strand, within DZA65_RS03315 at 702.725 kb on - strand, within DZA65_RS03315 at 702.790 kb on + strand, within DZA65_RS03315 at 702.791 kb on - strand, within DZA65_RS03315 at 702.835 kb on + strand, within DZA65_RS03315 at 703.006 kb on - strand, within DZA65_RS03315 at 703.009 kb on + strand, within DZA65_RS03315 at 703.009 kb on + strand, within DZA65_RS03315 at 703.009 kb on + strand, within DZA65_RS03315 at 703.009 kb on + strand, within DZA65_RS03315 at 703.010 kb on - strand, within DZA65_RS03315 at 703.010 kb on - strand, within DZA65_RS03315 at 703.010 kb on - strand, within DZA65_RS03315 at 703.010 kb on - strand, within DZA65_RS03315 at 703.010 kb on - strand, within DZA65_RS03315 at 703.010 kb on - strand, within DZA65_RS03315 at 703.010 kb on - strand, within DZA65_RS03315 at 703.104 kb on + strand, within DZA65_RS03315 at 703.105 kb on - strand, within DZA65_RS03315 at 703.105 kb on - strand, within DZA65_RS03315 at 703.105 kb on - strand, within DZA65_RS03315 at 703.107 kb on + strand, within DZA65_RS03315 at 703.107 kb on + strand, within DZA65_RS03315 at 703.338 kb on + strand at 703.465 kb on - strand at 703.492 kb on - strand at 703.493 kb on + strand at 703.493 kb on + strand at 703.493 kb on + strand at 703.495 kb on + strand at 703.495 kb on + strand at 703.495 kb on + strand at 703.495 kb on + strand at 703.495 kb on + strand at 703.495 kb on + strand at 703.495 kb on + strand at 703.495 kb on + strand at 703.496 kb on - strand at 703.496 kb on - strand at 703.496 kb on - strand at 703.548 kb on + strand at 703.549 kb on - strand at 703.557 kb on + strand at 703.557 kb on + strand at 703.557 kb on + strand at 703.557 kb on + strand at 703.557 kb on + strand at 703.557 kb on + strand at 703.557 kb on + strand at 703.557 kb on + strand at 703.558 kb on - strand at 703.558 kb on - strand at 703.624 kb on + strand, within DZA65_RS03320 at 703.625 kb on - strand, within DZA65_RS03320 at 703.625 kb on - strand, within DZA65_RS03320 at 703.625 kb on - strand, within DZA65_RS03320 at 703.700 kb on - strand, within DZA65_RS03320 at 703.759 kb on + strand, within DZA65_RS03320 at 703.759 kb on + strand, within DZA65_RS03320 at 704.023 kb on + strand, within DZA65_RS03320 at 704.024 kb on - strand, within DZA65_RS03320 at 704.024 kb on - strand, within DZA65_RS03320 at 704.062 kb on + strand, within DZA65_RS03320 at 704.101 kb on + strand, within DZA65_RS03320 at 704.102 kb on - strand, within DZA65_RS03320 at 704.128 kb on - strand, within DZA65_RS03320 at 704.309 kb on + strand at 704.309 kb on + strand at 704.310 kb on - strand at 704.364 kb on + strand at 704.373 kb on + strand at 704.374 kb on - strand at 704.377 kb on + strand at 704.397 kb on + strand at 704.398 kb on - strand at 704.437 kb on + strand at 704.437 kb on + strand at 704.438 kb on - strand at 704.438 kb on - strand at 704.438 kb on - strand at 704.438 kb on - strand at 704.438 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 701,300 + DZA65_RS03310 0.38 -0.5 701,300 + DZA65_RS03310 0.38 +0.1 701,407 + DZA65_RS03310 0.46 -0.2 701,407 + DZA65_RS03310 0.46 +1.8 701,408 - DZA65_RS03310 0.46 -1.0 701,428 + DZA65_RS03310 0.47 -0.7 701,438 + DZA65_RS03310 0.48 +0.3 701,438 + DZA65_RS03310 0.48 +0.1 701,438 + DZA65_RS03310 0.48 +1.2 701,438 + DZA65_RS03310 0.48 +0.2 701,438 + DZA65_RS03310 0.48 -0.6 701,438 + DZA65_RS03310 0.48 -0.9 701,438 + DZA65_RS03310 0.48 +0.4 701,438 + DZA65_RS03310 0.48 +0.4 701,438 + DZA65_RS03310 0.48 -0.4 701,439 - DZA65_RS03310 0.48 -0.7 701,439 - DZA65_RS03310 0.48 -0.4 701,439 - DZA65_RS03310 0.48 -0.7 701,439 - DZA65_RS03310 0.48 -0.9 701,485 + DZA65_RS03310 0.52 +0.9 701,485 + DZA65_RS03310 0.52 +1.4 701,486 - DZA65_RS03310 0.52 -1.6 701,734 - DZA65_RS03310 0.70 +0.8 701,734 - DZA65_RS03310 0.70 +1.7 701,734 - DZA65_RS03310 0.70 -1.2 701,734 - DZA65_RS03310 0.70 -1.8 701,786 + DZA65_RS03310 0.74 +0.4 701,786 + DZA65_RS03310 0.74 +0.1 701,787 - DZA65_RS03310 0.74 -0.8 701,791 + DZA65_RS03310 0.74 -0.2 701,791 + DZA65_RS03310 0.74 +0.0 701,792 - DZA65_RS03310 0.75 -0.5 701,792 - DZA65_RS03310 0.75 -1.8 701,792 - DZA65_RS03310 0.75 -1.4 701,792 - DZA65_RS03310 0.75 -1.8 701,792 - DZA65_RS03310 0.75 -0.2 701,792 - DZA65_RS03310 0.75 -1.3 701,795 + DZA65_RS03310 0.75 +0.3 701,795 + DZA65_RS03310 0.75 -0.8 701,795 + DZA65_RS03310 0.75 -0.8 701,795 + DZA65_RS03310 0.75 -1.7 701,795 + DZA65_RS03310 0.75 -0.6 701,795 + DZA65_RS03310 0.75 -0.8 701,795 + DZA65_RS03310 0.75 -0.5 701,795 + DZA65_RS03310 0.75 -1.0 701,795 + DZA65_RS03310 0.75 -0.1 701,796 - DZA65_RS03310 0.75 -0.2 701,796 - DZA65_RS03310 0.75 +0.2 701,796 - DZA65_RS03310 0.75 -0.6 701,796 - DZA65_RS03310 0.75 +1.5 701,796 - DZA65_RS03310 0.75 +1.2 701,796 - DZA65_RS03310 0.75 -0.4 701,796 - DZA65_RS03310 0.75 -0.8 701,796 - DZA65_RS03310 0.75 +0.2 701,796 - DZA65_RS03310 0.75 -0.3 701,796 - DZA65_RS03310 0.75 +0.6 701,796 - DZA65_RS03310 0.75 -0.2 701,796 - DZA65_RS03310 0.75 +0.3 701,923 + DZA65_RS03310 0.84 -1.0 701,924 - DZA65_RS03310 0.84 -0.7 702,128 + -0.0 702,129 - +0.3 702,135 - -0.1 702,153 + -0.1 702,153 + -0.1 702,154 - -0.1 702,157 + +0.2 702,157 + -0.4 702,157 + -0.3 702,157 + -0.8 702,157 + +0.3 702,157 + -0.3 702,157 + -0.7 702,157 + -0.6 702,157 + +0.0 702,157 + -0.2 702,157 + -0.3 702,158 - -0.3 702,158 - -0.2 702,170 + +0.6 702,177 + +0.4 702,181 + -0.6 702,181 + -0.0 702,181 + +0.3 702,181 + +0.6 702,182 - -1.1 702,182 - -0.2 702,182 - -0.0 702,182 - -0.1 702,182 - -0.6 702,183 + +0.6 702,183 + +0.6 702,183 + -0.0 702,183 + -0.3 702,183 + -1.0 702,184 - +0.4 702,184 - -0.9 702,184 - +0.3 702,184 - -0.1 702,184 - -0.6 702,184 - +0.2 702,184 - -2.1 702,184 - -0.7 702,184 - +1.0 702,184 - +0.3 702,196 - +1.4 702,213 + -1.6 702,213 + +0.3 702,213 + +0.4 702,214 - +1.5 702,214 - -1.5 702,217 + +0.6 702,217 + -0.6 702,217 + -0.8 702,217 + +0.5 702,218 - -0.3 702,218 - -2.1 702,234 + -0.5 702,234 + +0.5 702,234 + +0.0 702,234 + -1.0 702,235 - -0.1 702,235 - -0.3 702,235 - -0.6 702,235 - +0.2 702,235 - -0.2 702,235 - +0.2 702,235 - -0.7 702,238 - +0.5 702,238 - -0.1 702,307 - +0.3 702,307 - +0.7 702,462 + DZA65_RS03315 0.20 -0.7 702,462 + DZA65_RS03315 0.20 -0.9 702,475 + DZA65_RS03315 0.21 +0.2 702,724 + DZA65_RS03315 0.41 +0.1 702,725 - DZA65_RS03315 0.41 +0.8 702,790 + DZA65_RS03315 0.47 +1.6 702,791 - DZA65_RS03315 0.47 +0.1 702,835 + DZA65_RS03315 0.50 -0.1 703,006 - DZA65_RS03315 0.64 +0.4 703,009 + DZA65_RS03315 0.64 -0.8 703,009 + DZA65_RS03315 0.64 +0.8 703,009 + DZA65_RS03315 0.64 +0.5 703,009 + DZA65_RS03315 0.64 +0.1 703,010 - DZA65_RS03315 0.65 +0.5 703,010 - DZA65_RS03315 0.65 -0.5 703,010 - DZA65_RS03315 0.65 -0.6 703,010 - DZA65_RS03315 0.65 +0.5 703,010 - DZA65_RS03315 0.65 -0.5 703,010 - DZA65_RS03315 0.65 +0.0 703,010 - DZA65_RS03315 0.65 +1.3 703,104 + DZA65_RS03315 0.72 -0.6 703,105 - DZA65_RS03315 0.72 +0.7 703,105 - DZA65_RS03315 0.72 -0.5 703,105 - DZA65_RS03315 0.72 +0.3 703,107 + DZA65_RS03315 0.72 +0.4 703,107 + DZA65_RS03315 0.72 -0.1 703,338 + -0.3 703,465 - +0.9 703,492 - -2.2 703,493 + +0.8 703,493 + -0.8 703,493 + +1.5 703,495 + -0.6 703,495 + -2.9 703,495 + +1.0 703,495 + -1.4 703,495 + -1.0 703,495 + +1.2 703,495 + -0.7 703,495 + -0.2 703,496 - -0.1 703,496 - +0.4 703,496 - -1.1 703,548 + -1.6 703,549 - +0.7 703,557 + +0.3 703,557 + +0.1 703,557 + -1.1 703,557 + -0.4 703,557 + -0.3 703,557 + -0.2 703,557 + -1.8 703,557 + -1.0 703,558 - +0.1 703,558 - +0.9 703,624 + DZA65_RS03320 0.11 -2.0 703,625 - DZA65_RS03320 0.11 +0.2 703,625 - DZA65_RS03320 0.11 +0.4 703,625 - DZA65_RS03320 0.11 -1.6 703,700 - DZA65_RS03320 0.22 -0.4 703,759 + DZA65_RS03320 0.30 +1.2 703,759 + DZA65_RS03320 0.30 +0.0 704,023 + DZA65_RS03320 0.66 -1.0 704,024 - DZA65_RS03320 0.66 +0.4 704,024 - DZA65_RS03320 0.66 +1.2 704,062 + DZA65_RS03320 0.71 -0.6 704,101 + DZA65_RS03320 0.77 -0.1 704,102 - DZA65_RS03320 0.77 -0.5 704,128 - DZA65_RS03320 0.81 -1.8 704,309 + -1.3 704,309 + -0.1 704,310 - +0.2 704,364 + -0.4 704,373 + -0.4 704,374 - -0.4 704,377 + -0.4 704,397 + -0.1 704,398 - +1.9 704,437 + +0.7 704,437 + +1.4 704,438 - +0.6 704,438 - -0.8 704,438 - +0.5 704,438 - +0.1 704,438 - +0.9
Or see this region's nucleotide sequence