Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02280 and DZA65_RS02290 are separated by 133 nucleotides DZA65_RS02290 and DZA65_RS02295 are separated by 81 nucleotides DZA65_RS02295 and DZA65_RS02300 are separated by 66 nucleotides DZA65_RS02300 and DZA65_RS02305 are separated by 34 nucleotides
DZA65_RS02280: DZA65_RS02280 - FGGY-family carbohydrate kinase, at 494,677 to 496,188
_RS02280
DZA65_RS02290: DZA65_RS02290 - SDR family oxidoreductase, at 496,322 to 496,396
_RS02290
DZA65_RS02295: DZA65_RS02295 - cytolytic delta-endotoxin, at 496,478 to 497,140
_RS02295
DZA65_RS02300: DZA65_RS02300 - type-1Ba cytolytic delta-endotoxin, at 497,207 to 497,818
_RS02300
DZA65_RS02305: DZA65_RS02305 - type-2Aa cytolytic delta-endotoxin, at 497,853 to 498,452
_RS02305
Position (kb) 496
497
498 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 495.565 kb on + strand, within DZA65_RS02280 at 495.566 kb on - strand, within DZA65_RS02280 at 495.606 kb on - strand, within DZA65_RS02280 at 495.617 kb on + strand, within DZA65_RS02280 at 495.618 kb on - strand, within DZA65_RS02280 at 495.634 kb on - strand, within DZA65_RS02280 at 495.709 kb on + strand, within DZA65_RS02280 at 495.709 kb on + strand, within DZA65_RS02280 at 495.709 kb on + strand, within DZA65_RS02280 at 495.709 kb on + strand, within DZA65_RS02280 at 495.709 kb on + strand, within DZA65_RS02280 at 495.709 kb on + strand, within DZA65_RS02280 at 495.709 kb on + strand, within DZA65_RS02280 at 495.709 kb on + strand, within DZA65_RS02280 at 495.710 kb on - strand, within DZA65_RS02280 at 495.710 kb on - strand, within DZA65_RS02280 at 495.710 kb on - strand, within DZA65_RS02280 at 495.710 kb on - strand, within DZA65_RS02280 at 495.845 kb on + strand, within DZA65_RS02280 at 495.905 kb on + strand, within DZA65_RS02280 at 495.905 kb on + strand, within DZA65_RS02280 at 495.905 kb on + strand, within DZA65_RS02280 at 495.906 kb on - strand, within DZA65_RS02280 at 495.906 kb on - strand, within DZA65_RS02280 at 495.906 kb on - strand, within DZA65_RS02280 at 495.906 kb on - strand, within DZA65_RS02280 at 495.906 kb on - strand, within DZA65_RS02280 at 495.906 kb on - strand, within DZA65_RS02280 at 495.906 kb on - strand, within DZA65_RS02280 at 495.906 kb on - strand, within DZA65_RS02280 at 495.906 kb on - strand, within DZA65_RS02280 at 495.906 kb on - strand, within DZA65_RS02280 at 495.906 kb on - strand, within DZA65_RS02280 at 496.067 kb on + strand at 496.083 kb on + strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.084 kb on - strand at 496.152 kb on - strand at 496.234 kb on + strand at 496.297 kb on - strand at 496.346 kb on + strand, within DZA65_RS02290 at 496.346 kb on + strand, within DZA65_RS02290 at 496.346 kb on + strand, within DZA65_RS02290 at 496.346 kb on + strand, within DZA65_RS02290 at 496.347 kb on - strand, within DZA65_RS02290 at 496.347 kb on - strand, within DZA65_RS02290 at 496.347 kb on - strand, within DZA65_RS02290 at 496.347 kb on - strand, within DZA65_RS02290 at 496.408 kb on + strand at 496.408 kb on + strand at 496.408 kb on + strand at 496.408 kb on + strand at 496.409 kb on - strand at 496.409 kb on - strand at 496.409 kb on - strand at 496.409 kb on - strand at 496.409 kb on - strand at 496.411 kb on + strand at 496.411 kb on + strand at 496.412 kb on - strand at 496.417 kb on + strand at 496.417 kb on + strand at 496.417 kb on + strand at 496.417 kb on + strand at 496.418 kb on - strand at 496.418 kb on - strand at 496.418 kb on - strand at 496.418 kb on - strand at 496.418 kb on - strand at 496.418 kb on - strand at 496.418 kb on - strand at 496.418 kb on - strand at 496.418 kb on - strand at 496.476 kb on + strand at 496.476 kb on + strand at 496.477 kb on - strand at 496.487 kb on + strand at 496.505 kb on + strand at 496.520 kb on + strand at 496.527 kb on + strand at 496.528 kb on - strand at 496.528 kb on - strand at 496.553 kb on - strand, within DZA65_RS02295 at 496.553 kb on - strand, within DZA65_RS02295 at 496.640 kb on + strand, within DZA65_RS02295 at 496.640 kb on + strand, within DZA65_RS02295 at 496.640 kb on + strand, within DZA65_RS02295 at 496.641 kb on - strand, within DZA65_RS02295 at 496.641 kb on - strand, within DZA65_RS02295 at 496.650 kb on + strand, within DZA65_RS02295 at 496.650 kb on + strand, within DZA65_RS02295 at 496.651 kb on - strand, within DZA65_RS02295 at 496.654 kb on + strand, within DZA65_RS02295 at 496.654 kb on + strand, within DZA65_RS02295 at 496.654 kb on + strand, within DZA65_RS02295 at 496.654 kb on + strand, within DZA65_RS02295 at 496.655 kb on - strand, within DZA65_RS02295 at 496.655 kb on - strand, within DZA65_RS02295 at 496.655 kb on - strand, within DZA65_RS02295 at 496.655 kb on - strand, within DZA65_RS02295 at 496.655 kb on - strand at 496.656 kb on + strand, within DZA65_RS02295 at 496.656 kb on + strand, within DZA65_RS02295 at 496.656 kb on + strand, within DZA65_RS02295 at 496.656 kb on + strand, within DZA65_RS02295 at 496.656 kb on + strand, within DZA65_RS02295 at 496.656 kb on + strand, within DZA65_RS02295 at 496.656 kb on + strand, within DZA65_RS02295 at 496.656 kb on + strand, within DZA65_RS02295 at 496.656 kb on + strand, within DZA65_RS02295 at 496.656 kb on + strand, within DZA65_RS02295 at 496.656 kb on + strand, within DZA65_RS02295 at 496.657 kb on - strand, within DZA65_RS02295 at 496.657 kb on - strand, within DZA65_RS02295 at 496.657 kb on - strand, within DZA65_RS02295 at 496.657 kb on - strand, within DZA65_RS02295 at 496.657 kb on - strand, within DZA65_RS02295 at 496.657 kb on - strand, within DZA65_RS02295 at 496.669 kb on + strand, within DZA65_RS02295 at 496.725 kb on - strand, within DZA65_RS02295 at 496.757 kb on - strand, within DZA65_RS02295 at 496.812 kb on - strand, within DZA65_RS02295 at 496.877 kb on + strand, within DZA65_RS02295 at 496.878 kb on - strand, within DZA65_RS02295 at 496.916 kb on - strand, within DZA65_RS02295 at 496.930 kb on + strand, within DZA65_RS02295 at 496.931 kb on - strand, within DZA65_RS02295 at 496.931 kb on - strand, within DZA65_RS02295 at 496.931 kb on - strand, within DZA65_RS02295 at 496.981 kb on + strand, within DZA65_RS02295 at 496.981 kb on + strand, within DZA65_RS02295 at 496.981 kb on + strand, within DZA65_RS02295 at 496.981 kb on + strand, within DZA65_RS02295 at 496.982 kb on - strand, within DZA65_RS02295 at 496.982 kb on - strand, within DZA65_RS02295 at 496.983 kb on + strand, within DZA65_RS02295 at 496.984 kb on - strand, within DZA65_RS02295 at 496.984 kb on - strand, within DZA65_RS02295 at 496.984 kb on - strand, within DZA65_RS02295 at 496.984 kb on - strand, within DZA65_RS02295 at 497.042 kb on + strand, within DZA65_RS02295 at 497.049 kb on + strand, within DZA65_RS02295 at 497.077 kb on + strand at 497.103 kb on + strand at 497.103 kb on + strand at 497.103 kb on + strand at 497.103 kb on + strand at 497.103 kb on + strand at 497.103 kb on + strand at 497.104 kb on - strand at 497.104 kb on - strand at 497.104 kb on - strand at 497.104 kb on - strand at 497.104 kb on - strand at 497.107 kb on + strand at 497.107 kb on + strand at 497.107 kb on + strand at 497.107 kb on + strand at 497.108 kb on - strand at 497.108 kb on - strand at 497.131 kb on + strand at 497.131 kb on + strand at 497.132 kb on - strand at 497.140 kb on + strand at 497.140 kb on + strand at 497.141 kb on - strand at 497.141 kb on - strand at 497.141 kb on - strand at 497.141 kb on - strand at 497.141 kb on - strand at 497.159 kb on + strand at 497.160 kb on - strand at 497.191 kb on - strand at 497.195 kb on + strand at 497.297 kb on + strand, within DZA65_RS02300 at 497.391 kb on - strand, within DZA65_RS02300 at 497.397 kb on + strand, within DZA65_RS02300 at 497.443 kb on + strand, within DZA65_RS02300 at 497.511 kb on + strand, within DZA65_RS02300 at 497.612 kb on - strand, within DZA65_RS02300 at 497.756 kb on + strand, within DZA65_RS02300 at 497.810 kb on + strand at 497.831 kb on + strand at 497.831 kb on + strand at 497.832 kb on - strand at 497.832 kb on - strand at 497.833 kb on + strand at 497.834 kb on - strand at 497.849 kb on - strand at 497.855 kb on - strand at 497.885 kb on + strand at 497.886 kb on - strand at 497.886 kb on - strand at 497.886 kb on - strand at 497.886 kb on - strand at 497.886 kb on - strand at 497.886 kb on - strand at 497.957 kb on + strand, within DZA65_RS02305 at 497.963 kb on + strand, within DZA65_RS02305 at 497.963 kb on + strand, within DZA65_RS02305 at 497.963 kb on + strand, within DZA65_RS02305 at 497.963 kb on + strand, within DZA65_RS02305 at 497.963 kb on + strand, within DZA65_RS02305 at 497.964 kb on - strand, within DZA65_RS02305 at 497.964 kb on - strand, within DZA65_RS02305 at 498.032 kb on + strand, within DZA65_RS02305 at 498.032 kb on + strand, within DZA65_RS02305 at 498.032 kb on + strand, within DZA65_RS02305 at 498.032 kb on + strand, within DZA65_RS02305 at 498.032 kb on + strand, within DZA65_RS02305 at 498.033 kb on - strand, within DZA65_RS02305 at 498.033 kb on - strand, within DZA65_RS02305 at 498.035 kb on + strand, within DZA65_RS02305 at 498.035 kb on + strand, within DZA65_RS02305 at 498.036 kb on - strand, within DZA65_RS02305 at 498.036 kb on - strand, within DZA65_RS02305 at 498.038 kb on - strand, within DZA65_RS02305 at 498.038 kb on - strand, within DZA65_RS02305 at 498.043 kb on + strand, within DZA65_RS02305 at 498.078 kb on - strand, within DZA65_RS02305 at 498.078 kb on - strand, within DZA65_RS02305 at 498.082 kb on + strand, within DZA65_RS02305 at 498.083 kb on - strand, within DZA65_RS02305
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 495,565 + DZA65_RS02280 0.59 -1.1 495,566 - DZA65_RS02280 0.59 -0.7 495,606 - DZA65_RS02280 0.61 +0.2 495,617 + DZA65_RS02280 0.62 -0.6 495,618 - DZA65_RS02280 0.62 -2.5 495,634 - DZA65_RS02280 0.63 -0.8 495,709 + DZA65_RS02280 0.68 +0.5 495,709 + DZA65_RS02280 0.68 -0.3 495,709 + DZA65_RS02280 0.68 -1.3 495,709 + DZA65_RS02280 0.68 -0.2 495,709 + DZA65_RS02280 0.68 -0.2 495,709 + DZA65_RS02280 0.68 +0.5 495,709 + DZA65_RS02280 0.68 +0.3 495,709 + DZA65_RS02280 0.68 +0.4 495,710 - DZA65_RS02280 0.68 -0.4 495,710 - DZA65_RS02280 0.68 -0.8 495,710 - DZA65_RS02280 0.68 -0.5 495,710 - DZA65_RS02280 0.68 -1.2 495,845 + DZA65_RS02280 0.77 -0.2 495,905 + DZA65_RS02280 0.81 -0.0 495,905 + DZA65_RS02280 0.81 -1.0 495,905 + DZA65_RS02280 0.81 -1.8 495,906 - DZA65_RS02280 0.81 -1.7 495,906 - DZA65_RS02280 0.81 -0.5 495,906 - DZA65_RS02280 0.81 +0.1 495,906 - DZA65_RS02280 0.81 +0.2 495,906 - DZA65_RS02280 0.81 -0.3 495,906 - DZA65_RS02280 0.81 +0.1 495,906 - DZA65_RS02280 0.81 -0.7 495,906 - DZA65_RS02280 0.81 -0.2 495,906 - DZA65_RS02280 0.81 -0.3 495,906 - DZA65_RS02280 0.81 +0.4 495,906 - DZA65_RS02280 0.81 -0.7 496,067 + -1.0 496,083 + +0.8 496,084 - -0.2 496,084 - +0.3 496,084 - -0.1 496,152 - -1.3 496,234 + +0.8 496,297 - -0.2 496,346 + DZA65_RS02290 0.32 -0.9 496,346 + DZA65_RS02290 0.32 +0.5 496,346 + DZA65_RS02290 0.32 -1.3 496,346 + DZA65_RS02290 0.32 -1.0 496,347 - DZA65_RS02290 0.33 -0.3 496,347 - DZA65_RS02290 0.33 -0.0 496,347 - DZA65_RS02290 0.33 -0.2 496,347 - DZA65_RS02290 0.33 -0.8 496,408 + -1.1 496,408 + +0.9 496,408 + +0.9 496,408 + -0.3 496,409 - -1.8 496,409 - +0.5 496,409 - -1.1 496,409 - +0.2 496,409 - +1.1 496,411 + -1.6 496,411 + +0.0 496,412 - -0.1 496,417 + -0.8 496,417 + -1.9 496,417 + -1.3 496,417 + -0.3 496,418 - +0.5 496,418 - -0.3 496,418 - -0.3 496,418 - +0.6 496,418 - +0.7 496,418 - -0.3 496,418 - -0.9 496,418 - +0.2 496,418 - +0.3 496,476 + +0.2 496,476 + +1.1 496,477 - -0.0 496,487 + -2.1 496,505 + +0.1 496,520 + -0.5 496,527 + -0.3 496,528 - -0.1 496,528 - -3.2 496,553 - DZA65_RS02295 0.11 +1.0 496,553 - DZA65_RS02295 0.11 +0.4 496,640 + DZA65_RS02295 0.24 -0.9 496,640 + DZA65_RS02295 0.24 -0.9 496,640 + DZA65_RS02295 0.24 +0.8 496,641 - DZA65_RS02295 0.25 +0.7 496,641 - DZA65_RS02295 0.25 +0.2 496,650 + DZA65_RS02295 0.26 +0.5 496,650 + DZA65_RS02295 0.26 -1.6 496,651 - DZA65_RS02295 0.26 -0.3 496,654 + DZA65_RS02295 0.27 +1.0 496,654 + DZA65_RS02295 0.27 +0.1 496,654 + DZA65_RS02295 0.27 +0.2 496,654 + DZA65_RS02295 0.27 +1.2 496,655 - DZA65_RS02295 0.27 -0.8 496,655 - DZA65_RS02295 0.27 -0.5 496,655 - DZA65_RS02295 0.27 -0.0 496,655 - DZA65_RS02295 0.27 -1.6 496,655 - -0.8 496,656 + DZA65_RS02295 0.27 +0.6 496,656 + DZA65_RS02295 0.27 -0.1 496,656 + DZA65_RS02295 0.27 +0.3 496,656 + DZA65_RS02295 0.27 -0.5 496,656 + DZA65_RS02295 0.27 -1.3 496,656 + DZA65_RS02295 0.27 -0.6 496,656 + DZA65_RS02295 0.27 +0.1 496,656 + DZA65_RS02295 0.27 -0.5 496,656 + DZA65_RS02295 0.27 +1.0 496,656 + DZA65_RS02295 0.27 -0.6 496,656 + DZA65_RS02295 0.27 -0.3 496,657 - DZA65_RS02295 0.27 -0.3 496,657 - DZA65_RS02295 0.27 +0.5 496,657 - DZA65_RS02295 0.27 -0.2 496,657 - DZA65_RS02295 0.27 -0.9 496,657 - DZA65_RS02295 0.27 -1.1 496,657 - DZA65_RS02295 0.27 +1.0 496,669 + DZA65_RS02295 0.29 +0.2 496,725 - DZA65_RS02295 0.37 +1.0 496,757 - DZA65_RS02295 0.42 -0.8 496,812 - DZA65_RS02295 0.50 -0.4 496,877 + DZA65_RS02295 0.60 +0.7 496,878 - DZA65_RS02295 0.60 +0.1 496,916 - DZA65_RS02295 0.66 -0.5 496,930 + DZA65_RS02295 0.68 -0.4 496,931 - DZA65_RS02295 0.68 +0.0 496,931 - DZA65_RS02295 0.68 -0.5 496,931 - DZA65_RS02295 0.68 +1.2 496,981 + DZA65_RS02295 0.76 +0.3 496,981 + DZA65_RS02295 0.76 -0.1 496,981 + DZA65_RS02295 0.76 +0.7 496,981 + DZA65_RS02295 0.76 -0.0 496,982 - DZA65_RS02295 0.76 +0.9 496,982 - DZA65_RS02295 0.76 +1.6 496,983 + DZA65_RS02295 0.76 -0.6 496,984 - DZA65_RS02295 0.76 +0.2 496,984 - DZA65_RS02295 0.76 +0.7 496,984 - DZA65_RS02295 0.76 +1.0 496,984 - DZA65_RS02295 0.76 +0.4 497,042 + DZA65_RS02295 0.85 -0.8 497,049 + DZA65_RS02295 0.86 -1.1 497,077 + +0.2 497,103 + -0.2 497,103 + -0.6 497,103 + -0.3 497,103 + -1.0 497,103 + +0.0 497,103 + +0.2 497,104 - -0.1 497,104 - -0.3 497,104 - -0.3 497,104 - -0.1 497,104 - +0.7 497,107 + +0.5 497,107 + -0.8 497,107 + -2.0 497,107 + -0.1 497,108 - +0.2 497,108 - -0.1 497,131 + -2.2 497,131 + -1.6 497,132 - -1.8 497,140 + +0.0 497,140 + +0.2 497,141 - -0.8 497,141 - +0.3 497,141 - -0.1 497,141 - -1.1 497,141 - +0.0 497,159 + -0.8 497,160 - +0.0 497,191 - -0.1 497,195 + -1.6 497,297 + DZA65_RS02300 0.15 -1.9 497,391 - DZA65_RS02300 0.30 +0.7 497,397 + DZA65_RS02300 0.31 +1.2 497,443 + DZA65_RS02300 0.39 +0.5 497,511 + DZA65_RS02300 0.50 -0.9 497,612 - DZA65_RS02300 0.66 -1.5 497,756 + DZA65_RS02300 0.90 -1.3 497,810 + -1.9 497,831 + -0.1 497,831 + +0.6 497,832 - -0.4 497,832 - +0.6 497,833 + +0.7 497,834 - -0.7 497,849 - -0.1 497,855 - -0.9 497,885 + +0.3 497,886 - -0.8 497,886 - -2.9 497,886 - -0.0 497,886 - -0.3 497,886 - -0.8 497,886 - +0.0 497,957 + DZA65_RS02305 0.17 +0.1 497,963 + DZA65_RS02305 0.18 +1.5 497,963 + DZA65_RS02305 0.18 +1.0 497,963 + DZA65_RS02305 0.18 +0.3 497,963 + DZA65_RS02305 0.18 +0.1 497,963 + DZA65_RS02305 0.18 +0.5 497,964 - DZA65_RS02305 0.18 -0.3 497,964 - DZA65_RS02305 0.18 -1.3 498,032 + DZA65_RS02305 0.30 -1.9 498,032 + DZA65_RS02305 0.30 +0.8 498,032 + DZA65_RS02305 0.30 +0.1 498,032 + DZA65_RS02305 0.30 -0.1 498,032 + DZA65_RS02305 0.30 +0.2 498,033 - DZA65_RS02305 0.30 +0.1 498,033 - DZA65_RS02305 0.30 +1.2 498,035 + DZA65_RS02305 0.30 +0.8 498,035 + DZA65_RS02305 0.30 -0.3 498,036 - DZA65_RS02305 0.30 +0.8 498,036 - DZA65_RS02305 0.30 -1.7 498,038 - DZA65_RS02305 0.31 -0.9 498,038 - DZA65_RS02305 0.31 -0.0 498,043 + DZA65_RS02305 0.32 -1.3 498,078 - DZA65_RS02305 0.38 -1.2 498,078 - DZA65_RS02305 0.38 +0.0 498,082 + DZA65_RS02305 0.38 -0.2 498,083 - DZA65_RS02305 0.38 +2.2
Or see this region's nucleotide sequence