Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01010 and DZA65_RS01015 are separated by 138 nucleotides DZA65_RS01015 and DZA65_RS01020 are separated by 36 nucleotides DZA65_RS01020 and DZA65_RS01025 are separated by 25 nucleotides DZA65_RS01025 and DZA65_RS01030 are separated by 52 nucleotides
DZA65_RS01010: DZA65_RS01010 - FAD-dependent oxidoreductase, at 229,372 to 231,045
_RS01010
DZA65_RS01015: DZA65_RS01015 - helix-turn-helix transcriptional regulator, at 231,184 to 231,501
_RS01015
DZA65_RS01020: DZA65_RS01020 - YeeE/YedE family protein, at 231,538 to 231,966
_RS01020
DZA65_RS01025: DZA65_RS01025 - membrane protein, at 231,992 to 232,420
_RS01025
DZA65_RS01030: DZA65_RS01030 - acetyl-CoA C-acyltransferase FadA, at 232,473 to 233,636
_RS01030
Position (kb) 231
232 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 230.186 kb on + strand at 230.186 kb on + strand, within DZA65_RS01010 at 230.186 kb on + strand, within DZA65_RS01010 at 230.186 kb on + strand, within DZA65_RS01010 at 230.186 kb on + strand, within DZA65_RS01010 at 230.186 kb on + strand, within DZA65_RS01010 at 230.186 kb on + strand, within DZA65_RS01010 at 230.187 kb on - strand, within DZA65_RS01010 at 230.187 kb on - strand, within DZA65_RS01010 at 230.187 kb on - strand, within DZA65_RS01010 at 230.187 kb on - strand, within DZA65_RS01010 at 230.187 kb on - strand, within DZA65_RS01010 at 230.251 kb on + strand, within DZA65_RS01010 at 230.252 kb on - strand, within DZA65_RS01010 at 230.252 kb on - strand, within DZA65_RS01010 at 230.252 kb on - strand, within DZA65_RS01010 at 230.252 kb on - strand, within DZA65_RS01010 at 230.311 kb on - strand, within DZA65_RS01010 at 230.379 kb on + strand, within DZA65_RS01010 at 230.379 kb on + strand, within DZA65_RS01010 at 230.379 kb on + strand, within DZA65_RS01010 at 230.380 kb on - strand, within DZA65_RS01010 at 230.380 kb on - strand, within DZA65_RS01010 at 230.380 kb on - strand, within DZA65_RS01010 at 230.440 kb on + strand, within DZA65_RS01010 at 230.441 kb on - strand, within DZA65_RS01010 at 230.441 kb on - strand, within DZA65_RS01010 at 230.652 kb on + strand, within DZA65_RS01010 at 230.729 kb on + strand, within DZA65_RS01010 at 230.730 kb on - strand, within DZA65_RS01010 at 230.739 kb on + strand, within DZA65_RS01010 at 230.741 kb on + strand, within DZA65_RS01010 at 230.741 kb on + strand, within DZA65_RS01010 at 230.741 kb on + strand, within DZA65_RS01010 at 230.741 kb on + strand, within DZA65_RS01010 at 230.742 kb on - strand, within DZA65_RS01010 at 230.742 kb on - strand, within DZA65_RS01010 at 230.742 kb on - strand, within DZA65_RS01010 at 230.742 kb on - strand, within DZA65_RS01010 at 230.742 kb on - strand, within DZA65_RS01010 at 230.742 kb on - strand, within DZA65_RS01010 at 230.742 kb on - strand, within DZA65_RS01010 at 230.742 kb on - strand, within DZA65_RS01010 at 230.797 kb on - strand, within DZA65_RS01010 at 230.901 kb on + strand at 230.901 kb on + strand at 230.902 kb on - strand at 230.936 kb on + strand at 230.936 kb on + strand at 230.936 kb on + strand at 230.936 kb on + strand at 230.936 kb on + strand at 230.937 kb on - strand at 230.937 kb on - strand at 230.937 kb on - strand at 230.937 kb on - strand at 230.937 kb on - strand at 230.937 kb on - strand at 230.937 kb on - strand at 230.937 kb on - strand at 230.937 kb on - strand at 231.033 kb on + strand at 231.033 kb on + strand at 231.033 kb on + strand at 231.033 kb on + strand at 231.033 kb on + strand at 231.034 kb on - strand at 231.034 kb on - strand at 231.034 kb on - strand at 231.065 kb on - strand at 231.098 kb on + strand at 231.183 kb on + strand at 231.438 kb on + strand, within DZA65_RS01015 at 231.439 kb on - strand, within DZA65_RS01015 at 231.468 kb on + strand, within DZA65_RS01015 at 231.468 kb on + strand, within DZA65_RS01015 at 231.468 kb on + strand, within DZA65_RS01015 at 231.468 kb on + strand, within DZA65_RS01015 at 231.469 kb on - strand, within DZA65_RS01015 at 231.469 kb on - strand, within DZA65_RS01015 at 231.469 kb on - strand, within DZA65_RS01015 at 231.469 kb on - strand, within DZA65_RS01015 at 231.469 kb on - strand, within DZA65_RS01015 at 231.471 kb on + strand at 231.471 kb on + strand at 231.471 kb on + strand at 231.471 kb on + strand at 231.472 kb on - strand at 231.472 kb on - strand at 231.472 kb on - strand at 231.472 kb on - strand at 231.472 kb on - strand at 231.478 kb on + strand at 231.478 kb on + strand at 231.478 kb on + strand at 231.479 kb on - strand at 231.479 kb on - strand at 231.479 kb on - strand at 231.479 kb on - strand at 231.479 kb on - strand at 231.487 kb on + strand at 231.487 kb on + strand at 231.487 kb on + strand at 231.487 kb on + strand at 231.487 kb on + strand at 231.487 kb on + strand at 231.487 kb on + strand at 231.488 kb on - strand at 231.488 kb on - strand at 231.488 kb on - strand at 231.488 kb on - strand at 231.488 kb on - strand at 231.488 kb on - strand at 231.488 kb on - strand at 231.488 kb on - strand at 231.488 kb on - strand at 231.499 kb on + strand at 231.499 kb on + strand at 231.499 kb on + strand at 231.500 kb on - strand at 231.500 kb on - strand at 231.500 kb on - strand at 231.549 kb on + strand at 231.550 kb on - strand at 231.550 kb on - strand at 231.588 kb on + strand, within DZA65_RS01020 at 231.589 kb on - strand, within DZA65_RS01020 at 231.624 kb on - strand, within DZA65_RS01020 at 231.776 kb on + strand, within DZA65_RS01020 at 232.002 kb on + strand at 232.002 kb on + strand at 232.002 kb on + strand at 232.002 kb on + strand at 232.003 kb on - strand at 232.003 kb on - strand at 232.003 kb on - strand at 232.091 kb on - strand, within DZA65_RS01025 at 232.219 kb on - strand, within DZA65_RS01025 at 232.234 kb on + strand, within DZA65_RS01025 at 232.323 kb on - strand, within DZA65_RS01025 at 232.323 kb on - strand, within DZA65_RS01025 at 232.379 kb on + strand at 232.379 kb on + strand at 232.379 kb on + strand at 232.379 kb on + strand at 232.379 kb on + strand at 232.379 kb on + strand at 232.380 kb on - strand at 232.380 kb on - strand at 232.380 kb on - strand at 232.380 kb on - strand at 232.380 kb on - strand at 232.380 kb on - strand at 232.393 kb on + strand at 232.474 kb on + strand at 232.475 kb on - strand at 232.476 kb on + strand at 232.477 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 230,186 + +1.9 230,186 + DZA65_RS01010 0.49 -0.1 230,186 + DZA65_RS01010 0.49 -2.5 230,186 + DZA65_RS01010 0.49 +0.1 230,186 + DZA65_RS01010 0.49 +0.2 230,186 + DZA65_RS01010 0.49 +0.4 230,186 + DZA65_RS01010 0.49 -1.8 230,187 - DZA65_RS01010 0.49 +0.2 230,187 - DZA65_RS01010 0.49 +0.0 230,187 - DZA65_RS01010 0.49 +0.2 230,187 - DZA65_RS01010 0.49 -0.6 230,187 - DZA65_RS01010 0.49 +0.2 230,251 + DZA65_RS01010 0.53 +0.4 230,252 - DZA65_RS01010 0.53 -0.4 230,252 - DZA65_RS01010 0.53 +0.7 230,252 - DZA65_RS01010 0.53 -1.5 230,252 - DZA65_RS01010 0.53 +0.2 230,311 - DZA65_RS01010 0.56 +0.3 230,379 + DZA65_RS01010 0.60 +0.4 230,379 + DZA65_RS01010 0.60 +0.0 230,379 + DZA65_RS01010 0.60 +0.3 230,380 - DZA65_RS01010 0.60 -0.5 230,380 - DZA65_RS01010 0.60 -0.1 230,380 - DZA65_RS01010 0.60 -1.5 230,440 + DZA65_RS01010 0.64 +0.0 230,441 - DZA65_RS01010 0.64 -0.4 230,441 - DZA65_RS01010 0.64 -0.4 230,652 + DZA65_RS01010 0.76 -0.4 230,729 + DZA65_RS01010 0.81 -0.6 230,730 - DZA65_RS01010 0.81 +0.2 230,739 + DZA65_RS01010 0.82 -0.7 230,741 + DZA65_RS01010 0.82 -0.7 230,741 + DZA65_RS01010 0.82 +0.3 230,741 + DZA65_RS01010 0.82 -0.8 230,741 + DZA65_RS01010 0.82 +0.4 230,742 - DZA65_RS01010 0.82 -0.1 230,742 - DZA65_RS01010 0.82 -0.7 230,742 - DZA65_RS01010 0.82 -0.7 230,742 - DZA65_RS01010 0.82 -0.0 230,742 - DZA65_RS01010 0.82 -1.2 230,742 - DZA65_RS01010 0.82 +0.3 230,742 - DZA65_RS01010 0.82 +0.8 230,742 - DZA65_RS01010 0.82 -0.5 230,797 - DZA65_RS01010 0.85 -1.1 230,901 + -0.2 230,901 + -1.1 230,902 - -0.5 230,936 + +1.3 230,936 + -0.4 230,936 + +0.7 230,936 + +0.8 230,936 + -0.4 230,937 - +0.1 230,937 - -0.5 230,937 - +2.3 230,937 - -0.7 230,937 - +0.3 230,937 - -1.3 230,937 - -0.6 230,937 - +0.2 230,937 - -2.6 231,033 + -0.7 231,033 + -1.0 231,033 + +0.5 231,033 + -0.2 231,033 + +1.2 231,034 - -1.1 231,034 - -0.7 231,034 - -0.2 231,065 - +0.5 231,098 + +0.0 231,183 + -0.2 231,438 + DZA65_RS01015 0.80 +1.7 231,439 - DZA65_RS01015 0.80 +1.3 231,468 + DZA65_RS01015 0.89 +0.1 231,468 + DZA65_RS01015 0.89 +1.9 231,468 + DZA65_RS01015 0.89 +1.3 231,468 + DZA65_RS01015 0.89 +1.2 231,469 - DZA65_RS01015 0.90 -0.7 231,469 - DZA65_RS01015 0.90 -0.9 231,469 - DZA65_RS01015 0.90 +0.0 231,469 - DZA65_RS01015 0.90 +0.1 231,469 - DZA65_RS01015 0.90 -0.2 231,471 + -0.8 231,471 + +0.8 231,471 + -0.1 231,471 + -0.1 231,472 - -0.7 231,472 - -1.0 231,472 - -2.7 231,472 - +1.3 231,472 - -0.7 231,478 + -1.4 231,478 + -0.8 231,478 + -1.4 231,479 - +1.1 231,479 - +1.7 231,479 - -3.0 231,479 - +0.2 231,479 - -0.5 231,487 + +0.6 231,487 + +0.2 231,487 + +0.6 231,487 + -3.0 231,487 + +1.1 231,487 + -0.7 231,487 + -0.3 231,488 - +0.8 231,488 - -1.5 231,488 - -0.8 231,488 - -0.2 231,488 - +0.8 231,488 - +0.6 231,488 - +0.2 231,488 - -0.7 231,488 - +0.9 231,499 + +0.1 231,499 + +0.5 231,499 + -0.4 231,500 - -0.6 231,500 - +0.2 231,500 - +0.3 231,549 + -0.2 231,550 - -0.2 231,550 - +0.2 231,588 + DZA65_RS01020 0.12 +0.5 231,589 - DZA65_RS01020 0.12 -0.1 231,624 - DZA65_RS01020 0.20 +0.3 231,776 + DZA65_RS01020 0.55 +0.3 232,002 + -2.0 232,002 + -1.6 232,002 + +0.8 232,002 + -0.2 232,003 - +0.0 232,003 - -0.0 232,003 - +1.2 232,091 - DZA65_RS01025 0.23 -0.6 232,219 - DZA65_RS01025 0.53 -1.2 232,234 + DZA65_RS01025 0.56 -1.6 232,323 - DZA65_RS01025 0.77 +1.5 232,323 - DZA65_RS01025 0.77 -0.2 232,379 + -0.6 232,379 + -0.5 232,379 + -0.5 232,379 + +1.1 232,379 + -0.2 232,379 + +0.3 232,380 - +1.3 232,380 - +0.0 232,380 - -0.2 232,380 - -0.9 232,380 - -1.0 232,380 - +0.0 232,393 + +1.2 232,474 + +0.7 232,475 - -0.2 232,476 + +0.3 232,477 - -1.5
Or see this region's nucleotide sequence