Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00620 and DZA65_RS00625 are separated by 588 nucleotides DZA65_RS00625 and DZA65_RS00630 are separated by 537 nucleotides
DZA65_RS00620: DZA65_RS00620 - FkbM family methyltransferase, at 143,523 to 144,584
_RS00620
DZA65_RS00625: DZA65_RS00625 - acyltransferase, at 145,173 to 146,162
_RS00625
DZA65_RS00630: DZA65_RS00630 - sulfotransferase family 2 domain-containing protein, at 146,700 to 148,025
_RS00630
Position (kb) 145
146
147 Strain fitness (log2 ratio) -2
-1
0
1
2 at 144.193 kb on - strand, within DZA65_RS00620 at 144.228 kb on + strand, within DZA65_RS00620 at 144.261 kb on + strand, within DZA65_RS00620 at 144.262 kb on - strand, within DZA65_RS00620 at 144.463 kb on - strand, within DZA65_RS00620 at 144.480 kb on - strand at 144.525 kb on + strand at 144.617 kb on + strand at 144.623 kb on - strand at 144.648 kb on + strand at 144.649 kb on - strand at 144.650 kb on + strand at 144.654 kb on + strand at 144.664 kb on + strand at 144.665 kb on - strand at 144.734 kb on + strand at 144.734 kb on + strand at 144.734 kb on + strand at 144.734 kb on + strand at 144.734 kb on + strand at 144.735 kb on - strand at 144.735 kb on - strand at 144.738 kb on + strand at 144.738 kb on + strand at 144.739 kb on - strand at 144.739 kb on - strand at 144.739 kb on - strand at 144.744 kb on + strand at 144.760 kb on - strand at 144.762 kb on + strand at 144.763 kb on - strand at 144.779 kb on - strand at 144.779 kb on - strand at 144.779 kb on - strand at 144.779 kb on - strand at 144.779 kb on - strand at 144.779 kb on - strand at 144.779 kb on - strand at 144.779 kb on - strand at 144.781 kb on - strand at 144.781 kb on - strand at 144.781 kb on - strand at 144.781 kb on - strand at 144.781 kb on - strand at 144.781 kb on - strand at 144.781 kb on - strand at 144.781 kb on - strand at 144.781 kb on - strand at 144.781 kb on - strand at 144.781 kb on - strand at 144.781 kb on - strand at 144.783 kb on - strand at 144.807 kb on + strand at 144.839 kb on + strand at 144.839 kb on + strand at 144.839 kb on + strand at 144.839 kb on + strand at 144.839 kb on + strand at 144.847 kb on + strand at 144.847 kb on + strand at 144.847 kb on + strand at 144.869 kb on + strand at 144.870 kb on - strand at 144.889 kb on - strand at 144.941 kb on + strand at 144.947 kb on - strand at 144.947 kb on - strand at 144.948 kb on + strand at 144.948 kb on + strand at 144.948 kb on + strand at 144.948 kb on + strand at 144.949 kb on - strand at 144.952 kb on + strand at 144.959 kb on - strand at 145.067 kb on + strand at 145.068 kb on - strand at 145.167 kb on - strand at 145.317 kb on + strand, within DZA65_RS00625 at 145.327 kb on - strand, within DZA65_RS00625 at 145.341 kb on + strand, within DZA65_RS00625 at 145.348 kb on - strand, within DZA65_RS00625 at 145.348 kb on - strand, within DZA65_RS00625 at 145.387 kb on - strand, within DZA65_RS00625 at 145.446 kb on + strand, within DZA65_RS00625 at 145.567 kb on - strand, within DZA65_RS00625 at 145.567 kb on - strand, within DZA65_RS00625 at 145.705 kb on + strand, within DZA65_RS00625 at 145.743 kb on + strand, within DZA65_RS00625 at 145.750 kb on - strand, within DZA65_RS00625 at 145.750 kb on - strand, within DZA65_RS00625 at 145.753 kb on - strand, within DZA65_RS00625 at 145.813 kb on - strand, within DZA65_RS00625 at 145.813 kb on - strand, within DZA65_RS00625 at 145.888 kb on - strand, within DZA65_RS00625 at 145.920 kb on - strand, within DZA65_RS00625 at 145.920 kb on - strand, within DZA65_RS00625 at 145.920 kb on - strand, within DZA65_RS00625 at 146.033 kb on - strand, within DZA65_RS00625 at 146.126 kb on + strand at 146.126 kb on + strand at 146.127 kb on - strand at 146.127 kb on - strand at 146.127 kb on - strand at 146.127 kb on - strand at 146.128 kb on + strand at 146.128 kb on + strand at 146.128 kb on + strand at 146.128 kb on + strand at 146.128 kb on + strand at 146.129 kb on - strand at 146.155 kb on - strand at 146.160 kb on + strand at 146.161 kb on - strand at 146.161 kb on - strand at 146.164 kb on + strand at 146.164 kb on + strand at 146.165 kb on - strand at 146.245 kb on + strand at 146.246 kb on - strand at 146.246 kb on - strand at 146.255 kb on + strand at 146.289 kb on - strand at 146.307 kb on + strand at 146.308 kb on - strand at 146.308 kb on - strand at 146.308 kb on - strand at 146.308 kb on - strand at 146.311 kb on + strand at 146.312 kb on - strand at 146.312 kb on - strand at 146.340 kb on + strand at 146.341 kb on - strand at 146.341 kb on - strand at 146.389 kb on + strand at 146.417 kb on + strand at 146.418 kb on - strand at 146.421 kb on + strand at 146.422 kb on - strand at 146.422 kb on - strand at 146.422 kb on - strand at 146.442 kb on + strand at 146.442 kb on + strand at 146.442 kb on + strand at 146.443 kb on - strand at 146.443 kb on - strand at 146.444 kb on + strand at 146.444 kb on + strand at 146.444 kb on + strand at 146.444 kb on + strand at 146.445 kb on - strand at 146.446 kb on + strand at 146.446 kb on + strand at 146.446 kb on + strand at 146.446 kb on + strand at 146.447 kb on - strand at 146.447 kb on - strand at 146.447 kb on - strand at 146.458 kb on - strand at 146.458 kb on - strand at 146.458 kb on - strand at 146.509 kb on - strand at 146.591 kb on + strand at 146.591 kb on + strand at 146.591 kb on + strand at 146.591 kb on + strand at 146.591 kb on + strand at 146.591 kb on + strand at 146.592 kb on - strand at 146.592 kb on - strand at 146.592 kb on - strand at 146.592 kb on - strand at 146.592 kb on - strand at 146.592 kb on - strand at 146.592 kb on - strand at 146.592 kb on - strand at 146.593 kb on + strand at 146.593 kb on + strand at 146.593 kb on + strand at 146.593 kb on + strand at 146.593 kb on + strand at 146.593 kb on + strand at 146.593 kb on + strand at 146.593 kb on + strand at 146.594 kb on - strand at 146.594 kb on - strand at 146.594 kb on - strand at 146.594 kb on - strand at 146.594 kb on - strand at 146.594 kb on - strand at 146.641 kb on + strand at 146.641 kb on + strand at 146.646 kb on + strand at 146.646 kb on + strand at 146.646 kb on + strand at 146.646 kb on + strand at 146.646 kb on + strand at 146.647 kb on - strand at 146.647 kb on - strand at 146.648 kb on + strand at 146.648 kb on + strand at 146.648 kb on + strand at 146.648 kb on + strand at 146.648 kb on + strand at 146.649 kb on - strand at 146.649 kb on - strand at 146.649 kb on - strand at 146.693 kb on + strand at 146.693 kb on + strand at 146.693 kb on + strand at 146.693 kb on + strand at 146.693 kb on + strand at 146.693 kb on + strand at 146.694 kb on - strand at 146.694 kb on - strand at 146.694 kb on - strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.696 kb on + strand at 146.697 kb on - strand at 146.697 kb on - strand at 146.697 kb on - strand at 146.697 kb on - strand at 146.697 kb on - strand at 146.697 kb on - strand at 146.697 kb on - strand at 146.697 kb on - strand at 146.697 kb on - strand at 146.697 kb on - strand at 146.697 kb on - strand at 146.697 kb on - strand at 146.705 kb on + strand at 146.706 kb on - strand at 146.706 kb on - strand at 146.706 kb on - strand at 146.769 kb on + strand at 146.769 kb on + strand at 146.769 kb on + strand at 146.769 kb on + strand at 146.770 kb on - strand at 146.770 kb on - strand at 146.770 kb on - strand at 146.770 kb on - strand at 146.849 kb on + strand, within DZA65_RS00630 at 146.849 kb on + strand, within DZA65_RS00630 at 146.917 kb on - strand, within DZA65_RS00630 at 146.917 kb on - strand, within DZA65_RS00630 at 146.964 kb on + strand, within DZA65_RS00630 at 146.964 kb on + strand, within DZA65_RS00630 at 146.965 kb on - strand, within DZA65_RS00630 at 146.965 kb on - strand, within DZA65_RS00630 at 146.965 kb on - strand, within DZA65_RS00630 at 146.977 kb on + strand, within DZA65_RS00630 at 146.977 kb on + strand, within DZA65_RS00630 at 146.978 kb on - strand, within DZA65_RS00630 at 146.978 kb on - strand, within DZA65_RS00630 at 147.024 kb on + strand, within DZA65_RS00630 at 147.024 kb on + strand, within DZA65_RS00630 at 147.024 kb on + strand, within DZA65_RS00630 at 147.024 kb on + strand, within DZA65_RS00630 at 147.024 kb on + strand, within DZA65_RS00630 at 147.024 kb on + strand, within DZA65_RS00630 at 147.024 kb on + strand, within DZA65_RS00630 at 147.025 kb on - strand, within DZA65_RS00630 at 147.025 kb on - strand, within DZA65_RS00630 at 147.025 kb on - strand, within DZA65_RS00630 at 147.025 kb on - strand, within DZA65_RS00630 at 147.025 kb on - strand, within DZA65_RS00630 at 147.025 kb on - strand, within DZA65_RS00630 at 147.025 kb on - strand, within DZA65_RS00630 at 147.025 kb on - strand, within DZA65_RS00630 at 147.025 kb on - strand, within DZA65_RS00630 at 147.025 kb on - strand, within DZA65_RS00630 at 147.025 kb on - strand, within DZA65_RS00630 at 147.066 kb on - strand, within DZA65_RS00630 at 147.162 kb on + strand, within DZA65_RS00630
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 144,193 - DZA65_RS00620 0.63 -0.3 144,228 + DZA65_RS00620 0.66 +0.5 144,261 + DZA65_RS00620 0.69 +0.2 144,262 - DZA65_RS00620 0.70 -2.2 144,463 - DZA65_RS00620 0.89 -0.8 144,480 - -0.9 144,525 + -0.6 144,617 + -0.0 144,623 - +0.6 144,648 + +0.2 144,649 - +0.4 144,650 + +0.4 144,654 + -0.4 144,664 + -0.3 144,665 - -0.5 144,734 + -0.8 144,734 + -0.4 144,734 + -0.2 144,734 + -1.6 144,734 + -0.8 144,735 - -0.7 144,735 - -0.7 144,738 + -0.5 144,738 + -1.4 144,739 - +0.1 144,739 - -0.1 144,739 - +0.8 144,744 + -0.1 144,760 - -0.1 144,762 + +0.0 144,763 - +1.2 144,779 - -0.2 144,779 - -0.9 144,779 - +0.3 144,779 - -2.3 144,779 - +0.5 144,779 - -0.0 144,779 - -2.1 144,779 - -0.2 144,781 - +0.4 144,781 - -0.4 144,781 - +0.5 144,781 - +0.5 144,781 - +2.4 144,781 - -0.6 144,781 - -2.2 144,781 - -1.2 144,781 - -2.3 144,781 - -0.5 144,781 - -0.2 144,781 - -1.9 144,783 - -0.8 144,807 + -0.9 144,839 + -1.3 144,839 + -0.3 144,839 + -0.3 144,839 + -0.2 144,839 + +0.5 144,847 + -0.1 144,847 + -0.9 144,847 + -0.3 144,869 + -1.8 144,870 - -0.7 144,889 - +0.6 144,941 + -0.4 144,947 - +1.2 144,947 - +0.7 144,948 + +0.2 144,948 + -0.8 144,948 + -0.4 144,948 + -0.6 144,949 - -0.6 144,952 + -0.1 144,959 - -0.1 145,067 + -0.0 145,068 - +0.5 145,167 - +1.8 145,317 + DZA65_RS00625 0.15 +0.7 145,327 - DZA65_RS00625 0.16 -1.6 145,341 + DZA65_RS00625 0.17 -0.6 145,348 - DZA65_RS00625 0.18 -0.2 145,348 - DZA65_RS00625 0.18 -0.7 145,387 - DZA65_RS00625 0.22 -0.5 145,446 + DZA65_RS00625 0.28 +0.5 145,567 - DZA65_RS00625 0.40 -0.3 145,567 - DZA65_RS00625 0.40 +0.5 145,705 + DZA65_RS00625 0.54 +0.4 145,743 + DZA65_RS00625 0.58 -0.6 145,750 - DZA65_RS00625 0.58 +0.6 145,750 - DZA65_RS00625 0.58 -1.8 145,753 - DZA65_RS00625 0.59 +0.5 145,813 - DZA65_RS00625 0.65 -1.2 145,813 - DZA65_RS00625 0.65 +1.3 145,888 - DZA65_RS00625 0.72 +0.1 145,920 - DZA65_RS00625 0.75 +0.4 145,920 - DZA65_RS00625 0.75 +0.5 145,920 - DZA65_RS00625 0.75 +0.0 146,033 - DZA65_RS00625 0.87 +0.4 146,126 + +0.5 146,126 + -0.9 146,127 - -0.3 146,127 - +1.2 146,127 - -0.1 146,127 - +0.2 146,128 + +0.1 146,128 + +1.8 146,128 + +0.6 146,128 + +1.4 146,128 + +1.7 146,129 - -1.2 146,155 - +1.4 146,160 + -0.1 146,161 - -0.0 146,161 - -0.0 146,164 + +0.1 146,164 + -1.9 146,165 - -1.6 146,245 + -0.9 146,246 - -1.2 146,246 - -0.2 146,255 + -1.2 146,289 - +0.2 146,307 + +0.2 146,308 - -2.6 146,308 - -0.4 146,308 - -0.0 146,308 - +0.3 146,311 + +0.0 146,312 - -0.7 146,312 - -1.9 146,340 + -1.6 146,341 - -1.7 146,341 - +0.2 146,389 + +0.6 146,417 + -0.8 146,418 - -1.4 146,421 + +0.1 146,422 - -0.9 146,422 - +0.2 146,422 - +0.2 146,442 + -0.2 146,442 + +0.0 146,442 + +2.1 146,443 - +2.7 146,443 - +1.4 146,444 + -0.7 146,444 + -1.4 146,444 + -0.7 146,444 + -0.2 146,445 - +0.4 146,446 + -0.8 146,446 + -1.4 146,446 + -0.2 146,446 + -0.3 146,447 - +0.2 146,447 - +0.1 146,447 - -0.6 146,458 - -1.2 146,458 - -0.0 146,458 - -0.4 146,509 - -2.1 146,591 + +0.5 146,591 + +1.1 146,591 + -0.3 146,591 + +0.4 146,591 + +1.2 146,591 + -1.1 146,592 - -0.1 146,592 - -1.7 146,592 - -0.4 146,592 - -0.6 146,592 - +0.4 146,592 - +0.9 146,592 - -0.4 146,592 - -0.5 146,593 + -1.2 146,593 + -1.3 146,593 + +0.3 146,593 + -0.8 146,593 + +1.0 146,593 + -0.3 146,593 + -0.5 146,593 + -0.8 146,594 - -0.3 146,594 - -0.2 146,594 - -0.8 146,594 - -1.4 146,594 - +0.6 146,594 - -0.4 146,641 + -0.7 146,641 + +1.2 146,646 + -1.6 146,646 + -0.2 146,646 + -0.6 146,646 + +0.4 146,646 + +0.2 146,647 - +0.1 146,647 - +0.5 146,648 + +0.3 146,648 + -0.6 146,648 + +0.6 146,648 + -0.8 146,648 + +1.1 146,649 - -0.6 146,649 - -0.8 146,649 - +0.4 146,693 + -1.6 146,693 + +0.6 146,693 + -1.4 146,693 + +1.2 146,693 + -0.4 146,693 + +0.4 146,694 - -1.7 146,694 - -0.1 146,694 - -1.2 146,696 + +0.2 146,696 + -1.4 146,696 + -2.1 146,696 + +0.3 146,696 + -0.7 146,696 + +0.6 146,696 + +0.4 146,696 + -0.3 146,696 + -0.0 146,696 + +0.6 146,696 + -2.1 146,696 + +0.5 146,697 - +0.4 146,697 - +0.7 146,697 - -1.2 146,697 - +1.8 146,697 - -0.0 146,697 - +0.8 146,697 - +1.1 146,697 - -0.9 146,697 - -0.8 146,697 - -0.9 146,697 - -0.8 146,697 - -0.5 146,705 + +1.4 146,706 - -0.4 146,706 - -1.2 146,706 - -1.6 146,769 + -0.4 146,769 + -1.3 146,769 + +0.1 146,769 + -0.5 146,770 - +0.3 146,770 - -0.2 146,770 - -0.3 146,770 - +0.5 146,849 + DZA65_RS00630 0.11 -1.3 146,849 + DZA65_RS00630 0.11 -0.4 146,917 - DZA65_RS00630 0.16 +0.5 146,917 - DZA65_RS00630 0.16 +0.5 146,964 + DZA65_RS00630 0.20 -0.1 146,964 + DZA65_RS00630 0.20 +0.3 146,965 - DZA65_RS00630 0.20 -0.2 146,965 - DZA65_RS00630 0.20 +0.4 146,965 - DZA65_RS00630 0.20 -0.9 146,977 + DZA65_RS00630 0.21 -0.2 146,977 + DZA65_RS00630 0.21 -1.1 146,978 - DZA65_RS00630 0.21 -0.5 146,978 - DZA65_RS00630 0.21 +0.6 147,024 + DZA65_RS00630 0.24 +0.2 147,024 + DZA65_RS00630 0.24 +0.1 147,024 + DZA65_RS00630 0.24 -1.1 147,024 + DZA65_RS00630 0.24 +2.0 147,024 + DZA65_RS00630 0.24 +0.1 147,024 + DZA65_RS00630 0.24 -0.2 147,024 + DZA65_RS00630 0.24 +1.6 147,025 - DZA65_RS00630 0.25 +0.9 147,025 - DZA65_RS00630 0.25 -0.9 147,025 - DZA65_RS00630 0.25 -1.8 147,025 - DZA65_RS00630 0.25 +0.1 147,025 - DZA65_RS00630 0.25 -0.2 147,025 - DZA65_RS00630 0.25 -0.0 147,025 - DZA65_RS00630 0.25 +0.7 147,025 - DZA65_RS00630 0.25 +0.8 147,025 - DZA65_RS00630 0.25 -0.8 147,025 - DZA65_RS00630 0.25 -0.7 147,025 - DZA65_RS00630 0.25 -1.1 147,066 - DZA65_RS00630 0.28 -0.6 147,162 + DZA65_RS00630 0.35 -0.6
Or see this region's nucleotide sequence