Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS20885 and DZA65_RS20890 are separated by 44 nucleotides DZA65_RS20890 and DZA65_RS20895 are separated by 143 nucleotides DZA65_RS20895 and DZA65_RS20900 are separated by 155 nucleotides DZA65_RS20900 and DZA65_RS20905 are separated by 343 nucleotides
DZA65_RS20885: DZA65_RS20885 - maltodextrin phosphorylase, at 4,509,527 to 4,511,950
_RS20885
DZA65_RS20890: DZA65_RS20890 - DeoR/GlpR family transcriptional regulator, at 4,511,995 to 4,512,753
_RS20890
DZA65_RS20895: DZA65_RS20895 - rhomboid family intramembrane serine protease GlpG, at 4,512,897 to 4,513,721
_RS20895
DZA65_RS20900: DZA65_RS20900 - thiosulfate sulfurtransferase GlpE, at 4,513,877 to 4,514,197
_RS20900
DZA65_RS20905: DZA65_RS20905 - glycerol-3-phosphate dehydrogenase, at 4,514,541 to 4,516,040
_RS20905
Position (kb) 4512
4513
4514 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4511.966 kb on + strand at 4511.966 kb on + strand at 4511.967 kb on - strand at 4512.019 kb on - strand at 4512.055 kb on + strand at 4512.198 kb on - strand, within DZA65_RS20890 at 4512.226 kb on - strand, within DZA65_RS20890 at 4512.475 kb on - strand, within DZA65_RS20890 at 4512.698 kb on + strand at 4512.699 kb on - strand at 4512.796 kb on + strand at 4512.796 kb on + strand at 4512.797 kb on - strand at 4512.797 kb on - strand at 4512.840 kb on + strand at 4512.841 kb on - strand at 4512.848 kb on - strand at 4512.866 kb on + strand at 4512.866 kb on + strand at 4512.867 kb on - strand at 4512.867 kb on - strand at 4512.867 kb on - strand at 4512.880 kb on + strand at 4512.881 kb on - strand at 4512.887 kb on + strand at 4512.888 kb on - strand at 4512.888 kb on - strand at 4512.888 kb on - strand at 4512.918 kb on - strand at 4513.000 kb on + strand, within DZA65_RS20895 at 4513.093 kb on + strand, within DZA65_RS20895 at 4513.093 kb on + strand, within DZA65_RS20895 at 4513.093 kb on + strand, within DZA65_RS20895 at 4513.093 kb on + strand, within DZA65_RS20895 at 4513.094 kb on - strand, within DZA65_RS20895 at 4513.094 kb on - strand, within DZA65_RS20895 at 4513.094 kb on - strand, within DZA65_RS20895 at 4513.094 kb on - strand, within DZA65_RS20895 at 4513.094 kb on - strand, within DZA65_RS20895 at 4513.108 kb on + strand at 4513.108 kb on + strand, within DZA65_RS20895 at 4513.108 kb on + strand, within DZA65_RS20895 at 4513.108 kb on + strand, within DZA65_RS20895 at 4513.108 kb on + strand, within DZA65_RS20895 at 4513.109 kb on - strand, within DZA65_RS20895 at 4513.109 kb on - strand, within DZA65_RS20895 at 4513.109 kb on - strand, within DZA65_RS20895 at 4513.135 kb on + strand, within DZA65_RS20895 at 4513.135 kb on + strand, within DZA65_RS20895 at 4513.135 kb on + strand, within DZA65_RS20895 at 4513.136 kb on - strand, within DZA65_RS20895 at 4513.136 kb on - strand, within DZA65_RS20895 at 4513.159 kb on - strand, within DZA65_RS20895 at 4513.159 kb on - strand, within DZA65_RS20895 at 4513.243 kb on + strand, within DZA65_RS20895 at 4513.243 kb on + strand, within DZA65_RS20895 at 4513.243 kb on + strand, within DZA65_RS20895 at 4513.244 kb on - strand, within DZA65_RS20895 at 4513.351 kb on - strand, within DZA65_RS20895 at 4513.371 kb on + strand, within DZA65_RS20895 at 4513.371 kb on + strand, within DZA65_RS20895 at 4513.396 kb on + strand, within DZA65_RS20895 at 4513.396 kb on + strand, within DZA65_RS20895 at 4513.396 kb on + strand, within DZA65_RS20895 at 4513.397 kb on - strand, within DZA65_RS20895 at 4513.465 kb on + strand, within DZA65_RS20895 at 4513.466 kb on - strand, within DZA65_RS20895 at 4513.529 kb on - strand, within DZA65_RS20895 at 4513.632 kb on - strand, within DZA65_RS20895 at 4513.664 kb on + strand at 4513.664 kb on + strand at 4513.664 kb on + strand at 4513.664 kb on + strand at 4513.664 kb on + strand at 4513.664 kb on + strand at 4513.664 kb on + strand at 4513.664 kb on + strand at 4513.664 kb on + strand at 4513.664 kb on + strand at 4513.664 kb on + strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.666 kb on + strand at 4513.666 kb on + strand at 4513.666 kb on + strand at 4513.666 kb on + strand at 4513.666 kb on + strand at 4513.667 kb on - strand at 4513.667 kb on - strand at 4513.667 kb on - strand at 4513.667 kb on - strand at 4513.667 kb on - strand at 4513.667 kb on - strand at 4513.667 kb on - strand at 4513.728 kb on - strand at 4513.728 kb on - strand at 4513.755 kb on - strand at 4513.755 kb on - strand at 4513.755 kb on - strand at 4513.768 kb on + strand at 4513.769 kb on - strand at 4513.778 kb on - strand at 4513.778 kb on - strand at 4513.819 kb on + strand at 4513.819 kb on + strand at 4513.820 kb on - strand at 4513.820 kb on - strand at 4513.828 kb on + strand at 4513.828 kb on + strand at 4513.828 kb on + strand at 4513.878 kb on + strand at 4513.941 kb on + strand, within DZA65_RS20900 at 4513.942 kb on - strand, within DZA65_RS20900 at 4513.942 kb on - strand, within DZA65_RS20900 at 4513.942 kb on - strand, within DZA65_RS20900 at 4513.942 kb on - strand, within DZA65_RS20900 at 4513.942 kb on - strand, within DZA65_RS20900 at 4513.942 kb on - strand, within DZA65_RS20900 at 4513.942 kb on - strand, within DZA65_RS20900 at 4513.944 kb on - strand, within DZA65_RS20900 at 4513.963 kb on + strand, within DZA65_RS20900 at 4513.964 kb on - strand, within DZA65_RS20900 at 4513.964 kb on - strand, within DZA65_RS20900 at 4513.984 kb on + strand, within DZA65_RS20900 at 4514.004 kb on + strand, within DZA65_RS20900 at 4514.004 kb on + strand, within DZA65_RS20900 at 4514.004 kb on + strand, within DZA65_RS20900 at 4514.005 kb on - strand, within DZA65_RS20900 at 4514.126 kb on - strand, within DZA65_RS20900 at 4514.126 kb on - strand, within DZA65_RS20900 at 4514.126 kb on - strand, within DZA65_RS20900 at 4514.161 kb on - strand, within DZA65_RS20900 at 4514.161 kb on - strand, within DZA65_RS20900 at 4514.209 kb on + strand at 4514.220 kb on - strand at 4514.241 kb on + strand at 4514.242 kb on - strand at 4514.264 kb on + strand at 4514.264 kb on + strand at 4514.264 kb on + strand at 4514.264 kb on + strand at 4514.265 kb on - strand at 4514.308 kb on + strand at 4514.309 kb on - strand at 4514.309 kb on - strand at 4514.309 kb on - strand at 4514.309 kb on - strand at 4514.348 kb on - strand at 4514.356 kb on + strand at 4514.356 kb on + strand at 4514.356 kb on + strand at 4514.356 kb on + strand at 4514.356 kb on + strand at 4514.357 kb on - strand at 4514.357 kb on - strand at 4514.357 kb on - strand at 4514.357 kb on - strand at 4514.357 kb on - strand at 4514.357 kb on - strand at 4514.362 kb on + strand at 4514.412 kb on - strand at 4514.412 kb on - strand at 4514.508 kb on + strand at 4514.508 kb on + strand at 4514.508 kb on + strand at 4514.508 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,511,966 + -0.5 4,511,966 + +0.6 4,511,967 - +0.4 4,512,019 - -1.4 4,512,055 + -0.4 4,512,198 - DZA65_RS20890 0.27 -1.4 4,512,226 - DZA65_RS20890 0.30 -0.4 4,512,475 - DZA65_RS20890 0.63 +0.0 4,512,698 + -0.2 4,512,699 - -0.2 4,512,796 + -0.1 4,512,796 + -1.2 4,512,797 - -0.7 4,512,797 - +0.3 4,512,840 + -0.6 4,512,841 - +0.0 4,512,848 - -0.5 4,512,866 + +0.1 4,512,866 + +0.0 4,512,867 - -0.6 4,512,867 - +0.6 4,512,867 - -0.6 4,512,880 + +1.3 4,512,881 - -0.6 4,512,887 + +0.6 4,512,888 - -0.1 4,512,888 - -0.4 4,512,888 - -0.8 4,512,918 - -1.0 4,513,000 + DZA65_RS20895 0.12 +0.3 4,513,093 + DZA65_RS20895 0.24 +0.1 4,513,093 + DZA65_RS20895 0.24 -0.7 4,513,093 + DZA65_RS20895 0.24 -1.4 4,513,093 + DZA65_RS20895 0.24 -1.2 4,513,094 - DZA65_RS20895 0.24 -2.5 4,513,094 - DZA65_RS20895 0.24 +0.4 4,513,094 - DZA65_RS20895 0.24 -0.6 4,513,094 - DZA65_RS20895 0.24 +1.4 4,513,094 - DZA65_RS20895 0.24 +0.9 4,513,108 + +1.3 4,513,108 + DZA65_RS20895 0.26 -1.8 4,513,108 + DZA65_RS20895 0.26 -1.2 4,513,108 + DZA65_RS20895 0.26 -0.4 4,513,108 + DZA65_RS20895 0.26 -0.4 4,513,109 - DZA65_RS20895 0.26 -0.7 4,513,109 - DZA65_RS20895 0.26 +0.1 4,513,109 - DZA65_RS20895 0.26 +0.9 4,513,135 + DZA65_RS20895 0.29 +1.1 4,513,135 + DZA65_RS20895 0.29 +1.1 4,513,135 + DZA65_RS20895 0.29 +0.5 4,513,136 - DZA65_RS20895 0.29 +0.0 4,513,136 - DZA65_RS20895 0.29 -0.1 4,513,159 - DZA65_RS20895 0.32 +0.4 4,513,159 - DZA65_RS20895 0.32 -0.2 4,513,243 + DZA65_RS20895 0.42 -1.4 4,513,243 + DZA65_RS20895 0.42 -0.2 4,513,243 + DZA65_RS20895 0.42 +0.4 4,513,244 - DZA65_RS20895 0.42 +0.7 4,513,351 - DZA65_RS20895 0.55 -2.0 4,513,371 + DZA65_RS20895 0.57 -0.7 4,513,371 + DZA65_RS20895 0.57 -1.6 4,513,396 + DZA65_RS20895 0.60 -1.0 4,513,396 + DZA65_RS20895 0.60 -1.6 4,513,396 + DZA65_RS20895 0.60 -0.4 4,513,397 - DZA65_RS20895 0.61 -1.4 4,513,465 + DZA65_RS20895 0.69 -0.4 4,513,466 - DZA65_RS20895 0.69 -1.6 4,513,529 - DZA65_RS20895 0.77 +0.4 4,513,632 - DZA65_RS20895 0.89 -0.6 4,513,664 + -0.4 4,513,664 + +0.5 4,513,664 + -1.4 4,513,664 + +0.2 4,513,664 + -0.7 4,513,664 + -0.7 4,513,664 + -0.4 4,513,664 + -0.9 4,513,664 + +0.4 4,513,664 + -1.4 4,513,664 + -1.5 4,513,665 - +0.1 4,513,665 - +1.6 4,513,665 - -0.9 4,513,665 - -0.5 4,513,665 - -2.1 4,513,665 - -0.1 4,513,665 - +0.6 4,513,665 - -1.7 4,513,665 - -0.5 4,513,665 - +0.0 4,513,665 - -0.2 4,513,665 - +1.3 4,513,665 - -1.2 4,513,665 - -0.1 4,513,665 - +0.5 4,513,665 - -0.3 4,513,665 - +0.7 4,513,665 - +0.8 4,513,665 - -0.8 4,513,665 - -0.2 4,513,665 - +0.3 4,513,665 - -0.9 4,513,665 - -1.1 4,513,666 + -2.1 4,513,666 + +0.6 4,513,666 + +0.0 4,513,666 + +0.5 4,513,666 + +1.6 4,513,667 - -0.3 4,513,667 - +0.4 4,513,667 - +0.8 4,513,667 - -0.5 4,513,667 - -1.6 4,513,667 - +0.7 4,513,667 - -0.4 4,513,728 - -0.7 4,513,728 - -0.2 4,513,755 - -0.3 4,513,755 - +0.9 4,513,755 - +0.4 4,513,768 + +0.9 4,513,769 - -1.0 4,513,778 - -0.9 4,513,778 - +1.0 4,513,819 + +0.6 4,513,819 + -0.4 4,513,820 - +0.1 4,513,820 - -0.1 4,513,828 + +0.0 4,513,828 + -1.7 4,513,828 + +0.1 4,513,878 + +1.2 4,513,941 + DZA65_RS20900 0.20 +0.6 4,513,942 - DZA65_RS20900 0.20 +0.2 4,513,942 - DZA65_RS20900 0.20 -3.1 4,513,942 - DZA65_RS20900 0.20 -0.5 4,513,942 - DZA65_RS20900 0.20 -1.6 4,513,942 - DZA65_RS20900 0.20 -0.3 4,513,942 - DZA65_RS20900 0.20 -0.6 4,513,942 - DZA65_RS20900 0.20 -0.4 4,513,944 - DZA65_RS20900 0.21 -1.2 4,513,963 + DZA65_RS20900 0.27 -0.4 4,513,964 - DZA65_RS20900 0.27 +0.8 4,513,964 - DZA65_RS20900 0.27 -0.1 4,513,984 + DZA65_RS20900 0.33 +0.6 4,514,004 + DZA65_RS20900 0.40 +0.1 4,514,004 + DZA65_RS20900 0.40 -2.0 4,514,004 + DZA65_RS20900 0.40 -0.4 4,514,005 - DZA65_RS20900 0.40 -0.2 4,514,126 - DZA65_RS20900 0.78 -0.9 4,514,126 - DZA65_RS20900 0.78 -0.3 4,514,126 - DZA65_RS20900 0.78 +0.9 4,514,161 - DZA65_RS20900 0.88 -0.1 4,514,161 - DZA65_RS20900 0.88 -1.0 4,514,209 + -1.9 4,514,220 - -0.8 4,514,241 + +1.3 4,514,242 - +0.8 4,514,264 + +0.5 4,514,264 + -0.2 4,514,264 + +0.6 4,514,264 + -0.4 4,514,265 - -1.3 4,514,308 + -1.7 4,514,309 - -0.5 4,514,309 - +1.4 4,514,309 - -0.1 4,514,309 - +0.8 4,514,348 - +0.6 4,514,356 + -1.4 4,514,356 + -2.9 4,514,356 + -1.7 4,514,356 + -0.7 4,514,356 + -1.1 4,514,357 - -0.3 4,514,357 - +1.6 4,514,357 - +0.1 4,514,357 - -0.8 4,514,357 - -0.5 4,514,357 - +1.6 4,514,362 + -1.2 4,514,412 - -0.1 4,514,412 - -0.2 4,514,508 + -0.8 4,514,508 + -2.0 4,514,508 + -0.5 4,514,508 + +0.3
Or see this region's nucleotide sequence