Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19850

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS19845 and DZA65_RS19850 overlap by 4 nucleotidesDZA65_RS19850 and DZA65_RS19855 are separated by 46 nucleotides DZA65_RS19845: DZA65_RS19845 - LLM class flavin-dependent oxidoreductase, at 4,294,035 to 4,295,411 _RS19845 DZA65_RS19850: DZA65_RS19850 - ABC transporter substrate-binding protein, at 4,295,408 to 4,296,328 _RS19850 DZA65_RS19855: DZA65_RS19855 - ABC transporter substrate-binding protein, at 4,296,375 to 4,297,322 _RS19855 Position (kb) 4295 4296 4297Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4294.685 kb on + strand, within DZA65_RS19845at 4294.706 kb on + strand, within DZA65_RS19845at 4294.706 kb on + strand, within DZA65_RS19845at 4294.706 kb on + strand, within DZA65_RS19845at 4294.707 kb on - strand, within DZA65_RS19845at 4294.707 kb on - strand, within DZA65_RS19845at 4294.707 kb on - strand, within DZA65_RS19845at 4294.821 kb on - strand, within DZA65_RS19845at 4294.866 kb on - strand, within DZA65_RS19845at 4294.866 kb on - strand, within DZA65_RS19845at 4294.866 kb on - strand, within DZA65_RS19845at 4294.923 kb on + strand, within DZA65_RS19845at 4294.923 kb on + strand, within DZA65_RS19845at 4294.968 kb on + strand, within DZA65_RS19845at 4294.968 kb on + strand, within DZA65_RS19845at 4294.968 kb on + strand, within DZA65_RS19845at 4294.969 kb on - strand, within DZA65_RS19845at 4294.969 kb on - strand, within DZA65_RS19845at 4294.981 kb on - strand, within DZA65_RS19845at 4294.992 kb on + strand, within DZA65_RS19845at 4294.992 kb on + strand, within DZA65_RS19845at 4294.992 kb on + strand, within DZA65_RS19845at 4294.993 kb on - strand, within DZA65_RS19845at 4294.993 kb on - strand, within DZA65_RS19845at 4294.993 kb on - strand, within DZA65_RS19845at 4295.081 kb on + strand, within DZA65_RS19845at 4295.081 kb on + strand, within DZA65_RS19845at 4295.082 kb on - strand, within DZA65_RS19845at 4295.082 kb on - strand, within DZA65_RS19845at 4295.138 kb on + strand, within DZA65_RS19845at 4295.139 kb on - strand, within DZA65_RS19845at 4295.606 kb on - strand, within DZA65_RS19850at 4295.795 kb on - strand, within DZA65_RS19850at 4295.851 kb on + strand, within DZA65_RS19850at 4295.865 kb on - strand, within DZA65_RS19850at 4295.865 kb on - strand, within DZA65_RS19850at 4295.865 kb on - strand, within DZA65_RS19850at 4296.020 kb on + strand, within DZA65_RS19850at 4296.020 kb on + strand, within DZA65_RS19850at 4296.020 kb on + strand, within DZA65_RS19850at 4296.020 kb on + strand, within DZA65_RS19850at 4296.020 kb on + strand, within DZA65_RS19850at 4296.020 kb on + strand, within DZA65_RS19850at 4296.020 kb on + strand, within DZA65_RS19850at 4296.020 kb on + strand, within DZA65_RS19850at 4296.020 kb on + strand, within DZA65_RS19850at 4296.020 kb on + strand, within DZA65_RS19850at 4296.020 kb on + strand, within DZA65_RS19850at 4296.021 kb on - strandat 4296.021 kb on - strand, within DZA65_RS19850at 4296.021 kb on - strand, within DZA65_RS19850at 4296.021 kb on - strand, within DZA65_RS19850at 4296.021 kb on - strand, within DZA65_RS19850at 4296.021 kb on - strand, within DZA65_RS19850at 4296.021 kb on - strand, within DZA65_RS19850at 4296.021 kb on - strand, within DZA65_RS19850at 4296.104 kb on + strand, within DZA65_RS19850at 4296.105 kb on - strand, within DZA65_RS19850at 4296.246 kb on - strandat 4296.304 kb on + strandat 4296.304 kb on + strandat 4296.326 kb on + strandat 4296.327 kb on - strandat 4296.327 kb on - strandat 4296.356 kb on + strandat 4296.356 kb on + strandat 4296.357 kb on - strandat 4296.369 kb on + strandat 4296.369 kb on + strandat 4296.369 kb on + strandat 4296.369 kb on + strandat 4296.369 kb on + strandat 4296.369 kb on + strandat 4296.369 kb on + strandat 4296.369 kb on + strandat 4296.369 kb on + strandat 4296.369 kb on + strandat 4296.370 kb on - strandat 4296.370 kb on - strandat 4296.370 kb on - strandat 4296.370 kb on - strandat 4296.370 kb on - strandat 4296.370 kb on - strandat 4296.370 kb on - strandat 4296.437 kb on - strandat 4296.586 kb on + strand, within DZA65_RS19855at 4296.586 kb on + strand, within DZA65_RS19855at 4296.586 kb on + strand, within DZA65_RS19855at 4296.586 kb on + strand, within DZA65_RS19855at 4296.586 kb on + strand, within DZA65_RS19855at 4296.587 kb on - strand, within DZA65_RS19855at 4296.587 kb on - strand, within DZA65_RS19855at 4296.587 kb on - strand, within DZA65_RS19855at 4296.747 kb on + strand, within DZA65_RS19855at 4296.747 kb on + strand, within DZA65_RS19855at 4296.747 kb on + strand, within DZA65_RS19855at 4296.747 kb on + strand, within DZA65_RS19855at 4296.747 kb on + strand, within DZA65_RS19855at 4296.747 kb on + strand, within DZA65_RS19855at 4296.747 kb on + strand, within DZA65_RS19855at 4296.747 kb on + strand, within DZA65_RS19855at 4296.747 kb on + strand, within DZA65_RS19855at 4296.747 kb on + strand, within DZA65_RS19855at 4296.747 kb on + strand, within DZA65_RS19855at 4296.748 kb on - strand, within DZA65_RS19855at 4296.748 kb on - strand, within DZA65_RS19855at 4296.748 kb on - strand, within DZA65_RS19855at 4296.748 kb on - strand, within DZA65_RS19855at 4296.748 kb on - strand, within DZA65_RS19855at 4296.813 kb on + strand, within DZA65_RS19855at 4296.813 kb on + strand, within DZA65_RS19855at 4296.813 kb on + strand, within DZA65_RS19855at 4296.837 kb on + strand, within DZA65_RS19855at 4296.837 kb on + strand, within DZA65_RS19855at 4296.878 kb on + strand, within DZA65_RS19855at 4296.878 kb on + strand, within DZA65_RS19855at 4296.878 kb on + strand, within DZA65_RS19855at 4296.878 kb on + strand, within DZA65_RS19855at 4296.885 kb on - strand, within DZA65_RS19855at 4296.993 kb on + strand, within DZA65_RS19855at 4296.993 kb on + strand, within DZA65_RS19855at 4296.993 kb on + strand, within DZA65_RS19855at 4296.993 kb on + strand, within DZA65_RS19855at 4296.994 kb on - strand, within DZA65_RS19855at 4296.994 kb on - strand, within DZA65_RS19855at 4296.994 kb on - strand, within DZA65_RS19855at 4297.077 kb on + strand, within DZA65_RS19855at 4297.078 kb on - strand, within DZA65_RS19855at 4297.230 kb on + strandat 4297.231 kb on - strandat 4297.321 kb on - strandat 4297.321 kb on - strandat 4297.321 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,294,685 + DZA65_RS19845 0.47 -1.5
4,294,706 + DZA65_RS19845 0.49 -2.2
4,294,706 + DZA65_RS19845 0.49 +0.0
4,294,706 + DZA65_RS19845 0.49 -0.9
4,294,707 - DZA65_RS19845 0.49 -0.7
4,294,707 - DZA65_RS19845 0.49 +0.1
4,294,707 - DZA65_RS19845 0.49 -0.8
4,294,821 - DZA65_RS19845 0.57 +0.5
4,294,866 - DZA65_RS19845 0.60 -0.2
4,294,866 - DZA65_RS19845 0.60 -1.2
4,294,866 - DZA65_RS19845 0.60 -0.6
4,294,923 + DZA65_RS19845 0.64 -0.8
4,294,923 + DZA65_RS19845 0.64 -0.3
4,294,968 + DZA65_RS19845 0.68 -1.1
4,294,968 + DZA65_RS19845 0.68 -0.1
4,294,968 + DZA65_RS19845 0.68 -0.4
4,294,969 - DZA65_RS19845 0.68 -0.2
4,294,969 - DZA65_RS19845 0.68 +1.2
4,294,981 - DZA65_RS19845 0.69 +0.8
4,294,992 + DZA65_RS19845 0.69 +0.3
4,294,992 + DZA65_RS19845 0.69 -0.3
4,294,992 + DZA65_RS19845 0.69 +0.5
4,294,993 - DZA65_RS19845 0.70 -1.6
4,294,993 - DZA65_RS19845 0.70 +0.5
4,294,993 - DZA65_RS19845 0.70 -1.1
4,295,081 + DZA65_RS19845 0.76 -1.5
4,295,081 + DZA65_RS19845 0.76 -0.2
4,295,082 - DZA65_RS19845 0.76 +0.2
4,295,082 - DZA65_RS19845 0.76 +0.1
4,295,138 + DZA65_RS19845 0.80 -0.7
4,295,139 - DZA65_RS19845 0.80 +0.1
4,295,606 - DZA65_RS19850 0.21 -1.2
4,295,795 - DZA65_RS19850 0.42 -0.1
4,295,851 + DZA65_RS19850 0.48 +0.5
4,295,865 - DZA65_RS19850 0.50 -0.2
4,295,865 - DZA65_RS19850 0.50 -0.9
4,295,865 - DZA65_RS19850 0.50 -3.0
4,296,020 + DZA65_RS19850 0.66 +0.4
4,296,020 + DZA65_RS19850 0.66 -1.3
4,296,020 + DZA65_RS19850 0.66 +0.7
4,296,020 + DZA65_RS19850 0.66 -1.5
4,296,020 + DZA65_RS19850 0.66 -0.4
4,296,020 + DZA65_RS19850 0.66 +0.8
4,296,020 + DZA65_RS19850 0.66 -0.6
4,296,020 + DZA65_RS19850 0.66 +0.5
4,296,020 + DZA65_RS19850 0.66 +0.4
4,296,020 + DZA65_RS19850 0.66 -0.4
4,296,020 + DZA65_RS19850 0.66 +0.7
4,296,021 - -0.5
4,296,021 - DZA65_RS19850 0.67 -0.1
4,296,021 - DZA65_RS19850 0.67 -0.5
4,296,021 - DZA65_RS19850 0.67 +1.0
4,296,021 - DZA65_RS19850 0.67 +1.4
4,296,021 - DZA65_RS19850 0.67 +0.2
4,296,021 - DZA65_RS19850 0.67 +1.1
4,296,021 - DZA65_RS19850 0.67 +0.5
4,296,104 + DZA65_RS19850 0.76 +0.1
4,296,105 - DZA65_RS19850 0.76 +0.0
4,296,246 - +0.5
4,296,304 + -1.1
4,296,304 + +0.7
4,296,326 + -0.5
4,296,327 - -0.8
4,296,327 - -0.1
4,296,356 + +0.4
4,296,356 + -0.1
4,296,357 - +0.2
4,296,369 + +0.1
4,296,369 + -0.2
4,296,369 + -0.2
4,296,369 + +0.1
4,296,369 + +0.1
4,296,369 + -1.9
4,296,369 + -1.4
4,296,369 + -1.1
4,296,369 + -0.4
4,296,369 + -0.7
4,296,370 - -0.0
4,296,370 - +0.3
4,296,370 - +0.5
4,296,370 - -0.6
4,296,370 - -0.7
4,296,370 - -0.3
4,296,370 - -1.6
4,296,437 - -0.5
4,296,586 + DZA65_RS19855 0.22 -0.2
4,296,586 + DZA65_RS19855 0.22 -0.7
4,296,586 + DZA65_RS19855 0.22 +0.1
4,296,586 + DZA65_RS19855 0.22 -0.7
4,296,586 + DZA65_RS19855 0.22 -0.8
4,296,587 - DZA65_RS19855 0.22 +1.5
4,296,587 - DZA65_RS19855 0.22 -0.8
4,296,587 - DZA65_RS19855 0.22 +0.0
4,296,747 + DZA65_RS19855 0.39 -0.1
4,296,747 + DZA65_RS19855 0.39 +1.5
4,296,747 + DZA65_RS19855 0.39 +0.9
4,296,747 + DZA65_RS19855 0.39 -0.3
4,296,747 + DZA65_RS19855 0.39 -0.1
4,296,747 + DZA65_RS19855 0.39 -1.2
4,296,747 + DZA65_RS19855 0.39 -0.7
4,296,747 + DZA65_RS19855 0.39 +0.1
4,296,747 + DZA65_RS19855 0.39 +0.5
4,296,747 + DZA65_RS19855 0.39 +1.4
4,296,747 + DZA65_RS19855 0.39 +0.7
4,296,748 - DZA65_RS19855 0.39 +0.8
4,296,748 - DZA65_RS19855 0.39 -0.4
4,296,748 - DZA65_RS19855 0.39 +0.3
4,296,748 - DZA65_RS19855 0.39 -0.3
4,296,748 - DZA65_RS19855 0.39 -0.1
4,296,813 + DZA65_RS19855 0.46 -0.7
4,296,813 + DZA65_RS19855 0.46 -0.1
4,296,813 + DZA65_RS19855 0.46 -0.1
4,296,837 + DZA65_RS19855 0.49 +0.7
4,296,837 + DZA65_RS19855 0.49 -1.5
4,296,878 + DZA65_RS19855 0.53 +2.1
4,296,878 + DZA65_RS19855 0.53 -0.0
4,296,878 + DZA65_RS19855 0.53 -1.1
4,296,878 + DZA65_RS19855 0.53 -0.6
4,296,885 - DZA65_RS19855 0.54 -1.1
4,296,993 + DZA65_RS19855 0.65 -0.5
4,296,993 + DZA65_RS19855 0.65 -0.2
4,296,993 + DZA65_RS19855 0.65 -0.3
4,296,993 + DZA65_RS19855 0.65 -0.8
4,296,994 - DZA65_RS19855 0.65 -0.9
4,296,994 - DZA65_RS19855 0.65 -1.0
4,296,994 - DZA65_RS19855 0.65 +0.2
4,297,077 + DZA65_RS19855 0.74 +0.5
4,297,078 - DZA65_RS19855 0.74 -0.1
4,297,230 + -0.1
4,297,231 - +1.3
4,297,321 - +0.1
4,297,321 - +0.2
4,297,321 - -2.4

Or see this region's nucleotide sequence