Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS19280 and DZA65_RS19285 are separated by 193 nucleotides DZA65_RS19285 and DZA65_RS19290 are separated by 6 nucleotides DZA65_RS19290 and DZA65_RS19295 are separated by 1 nucleotides
DZA65_RS19280: DZA65_RS19280 - DedA family protein, at 4,167,490 to 4,168,257
_RS19280
DZA65_RS19285: DZA65_RS19285 - DUF3380 domain-containing protein, at 4,168,451 to 4,169,302
_RS19285
DZA65_RS19290: DZA65_RS19290 - hypothetical protein, at 4,169,309 to 4,169,875
_RS19290
DZA65_RS19295: DZA65_RS19295 - hypothetical protein, at 4,169,877 to 4,170,644
_RS19295
Position (kb) 4168
4169
4170 Strain fitness (log2 ratio) -2
-1
0
1 at 4167.491 kb on + strand at 4167.491 kb on + strand at 4167.491 kb on + strand at 4167.491 kb on + strand at 4167.491 kb on + strand at 4167.492 kb on - strand at 4167.524 kb on + strand at 4167.524 kb on + strand at 4167.524 kb on + strand at 4167.525 kb on - strand at 4167.702 kb on + strand, within DZA65_RS19280 at 4167.702 kb on + strand, within DZA65_RS19280 at 4167.703 kb on - strand, within DZA65_RS19280 at 4167.703 kb on - strand, within DZA65_RS19280 at 4167.703 kb on - strand, within DZA65_RS19280 at 4167.726 kb on + strand, within DZA65_RS19280 at 4167.726 kb on + strand, within DZA65_RS19280 at 4167.726 kb on + strand, within DZA65_RS19280 at 4167.727 kb on - strand, within DZA65_RS19280 at 4167.727 kb on - strand, within DZA65_RS19280 at 4167.727 kb on - strand, within DZA65_RS19280 at 4167.727 kb on - strand, within DZA65_RS19280 at 4167.727 kb on - strand, within DZA65_RS19280 at 4167.795 kb on - strand, within DZA65_RS19280 at 4167.795 kb on - strand, within DZA65_RS19280 at 4167.795 kb on - strand, within DZA65_RS19280 at 4167.795 kb on - strand, within DZA65_RS19280 at 4167.810 kb on + strand, within DZA65_RS19280 at 4167.930 kb on + strand, within DZA65_RS19280 at 4167.930 kb on + strand, within DZA65_RS19280 at 4167.962 kb on + strand, within DZA65_RS19280 at 4167.968 kb on + strand, within DZA65_RS19280 at 4167.968 kb on + strand, within DZA65_RS19280 at 4167.968 kb on + strand, within DZA65_RS19280 at 4167.968 kb on + strand, within DZA65_RS19280 at 4167.969 kb on - strand, within DZA65_RS19280 at 4167.969 kb on - strand, within DZA65_RS19280 at 4167.969 kb on - strand, within DZA65_RS19280 at 4167.969 kb on - strand, within DZA65_RS19280 at 4167.969 kb on - strand, within DZA65_RS19280 at 4167.969 kb on - strand, within DZA65_RS19280 at 4167.999 kb on + strand, within DZA65_RS19280 at 4167.999 kb on + strand, within DZA65_RS19280 at 4167.999 kb on + strand, within DZA65_RS19280 at 4168.000 kb on - strand, within DZA65_RS19280 at 4168.000 kb on - strand at 4168.034 kb on + strand, within DZA65_RS19280 at 4168.034 kb on + strand, within DZA65_RS19280 at 4168.214 kb on + strand at 4168.214 kb on + strand at 4168.214 kb on + strand at 4168.214 kb on + strand at 4168.214 kb on + strand at 4168.215 kb on - strand at 4168.215 kb on - strand at 4168.215 kb on - strand at 4168.215 kb on - strand at 4168.257 kb on + strand at 4168.265 kb on + strand at 4168.265 kb on + strand at 4168.265 kb on + strand at 4168.266 kb on - strand at 4168.270 kb on + strand at 4168.270 kb on + strand at 4168.270 kb on + strand at 4168.270 kb on + strand at 4168.270 kb on + strand at 4168.270 kb on + strand at 4168.270 kb on + strand at 4168.270 kb on + strand at 4168.271 kb on - strand at 4168.271 kb on - strand at 4168.271 kb on - strand at 4168.271 kb on - strand at 4168.271 kb on - strand at 4168.271 kb on - strand at 4168.271 kb on - strand at 4168.307 kb on + strand at 4168.307 kb on + strand at 4168.308 kb on - strand at 4168.342 kb on - strand at 4168.401 kb on + strand at 4168.412 kb on + strand at 4168.412 kb on + strand at 4168.413 kb on - strand at 4168.414 kb on + strand at 4168.415 kb on - strand at 4168.415 kb on - strand at 4168.415 kb on - strand at 4168.428 kb on + strand at 4168.428 kb on + strand at 4168.437 kb on - strand at 4168.530 kb on + strand at 4168.531 kb on - strand at 4168.531 kb on - strand at 4168.537 kb on + strand, within DZA65_RS19285 at 4168.570 kb on + strand, within DZA65_RS19285 at 4168.571 kb on - strand, within DZA65_RS19285 at 4168.571 kb on - strand, within DZA65_RS19285 at 4168.571 kb on - strand, within DZA65_RS19285 at 4168.571 kb on - strand, within DZA65_RS19285 at 4168.620 kb on + strand, within DZA65_RS19285 at 4168.620 kb on + strand, within DZA65_RS19285 at 4168.623 kb on + strand, within DZA65_RS19285 at 4168.624 kb on - strand, within DZA65_RS19285 at 4168.624 kb on - strand, within DZA65_RS19285 at 4168.624 kb on - strand, within DZA65_RS19285 at 4168.645 kb on + strand, within DZA65_RS19285 at 4168.645 kb on + strand, within DZA65_RS19285 at 4168.645 kb on + strand, within DZA65_RS19285 at 4168.666 kb on + strand, within DZA65_RS19285 at 4168.666 kb on + strand, within DZA65_RS19285 at 4168.666 kb on + strand, within DZA65_RS19285 at 4168.666 kb on + strand, within DZA65_RS19285 at 4168.666 kb on + strand, within DZA65_RS19285 at 4168.667 kb on - strand, within DZA65_RS19285 at 4168.680 kb on + strand, within DZA65_RS19285 at 4168.681 kb on - strand, within DZA65_RS19285 at 4168.681 kb on - strand, within DZA65_RS19285 at 4168.763 kb on + strand, within DZA65_RS19285 at 4168.820 kb on - strand, within DZA65_RS19285 at 4168.840 kb on + strand, within DZA65_RS19285 at 4168.840 kb on + strand, within DZA65_RS19285 at 4168.872 kb on + strand, within DZA65_RS19285 at 4168.872 kb on + strand, within DZA65_RS19285 at 4168.872 kb on + strand, within DZA65_RS19285 at 4168.872 kb on + strand, within DZA65_RS19285 at 4168.872 kb on + strand, within DZA65_RS19285 at 4168.877 kb on + strand, within DZA65_RS19285 at 4168.912 kb on + strand, within DZA65_RS19285 at 4168.912 kb on + strand, within DZA65_RS19285 at 4168.912 kb on + strand, within DZA65_RS19285 at 4168.912 kb on + strand, within DZA65_RS19285 at 4168.913 kb on - strand, within DZA65_RS19285 at 4168.913 kb on - strand, within DZA65_RS19285 at 4168.913 kb on - strand, within DZA65_RS19285 at 4168.913 kb on - strand, within DZA65_RS19285 at 4168.913 kb on - strand, within DZA65_RS19285 at 4168.913 kb on - strand, within DZA65_RS19285 at 4168.916 kb on + strand, within DZA65_RS19285 at 4168.916 kb on + strand, within DZA65_RS19285 at 4168.916 kb on + strand, within DZA65_RS19285 at 4168.917 kb on - strand, within DZA65_RS19285 at 4168.917 kb on - strand, within DZA65_RS19285 at 4168.937 kb on - strand, within DZA65_RS19285 at 4168.954 kb on + strand, within DZA65_RS19285 at 4168.955 kb on - strand, within DZA65_RS19285 at 4168.961 kb on + strand, within DZA65_RS19285 at 4169.072 kb on + strand, within DZA65_RS19285 at 4169.072 kb on + strand, within DZA65_RS19285 at 4169.073 kb on - strand, within DZA65_RS19285 at 4169.073 kb on - strand, within DZA65_RS19285 at 4169.073 kb on - strand, within DZA65_RS19285 at 4169.073 kb on - strand, within DZA65_RS19285 at 4169.075 kb on - strand, within DZA65_RS19285 at 4169.075 kb on - strand, within DZA65_RS19285 at 4169.126 kb on - strand, within DZA65_RS19285 at 4169.153 kb on - strand, within DZA65_RS19285 at 4169.225 kb on + strand at 4169.226 kb on - strand at 4169.227 kb on + strand at 4169.227 kb on + strand at 4169.228 kb on - strand at 4169.256 kb on - strand at 4169.304 kb on - strand at 4169.306 kb on + strand at 4169.383 kb on - strand, within DZA65_RS19290 at 4169.419 kb on - strand, within DZA65_RS19290 at 4169.709 kb on + strand, within DZA65_RS19290 at 4169.775 kb on + strand, within DZA65_RS19290 at 4169.776 kb on - strand, within DZA65_RS19290 at 4169.887 kb on + strand at 4169.923 kb on + strand at 4169.924 kb on - strand at 4169.924 kb on - strand at 4169.966 kb on - strand, within DZA65_RS19295 at 4169.966 kb on - strand, within DZA65_RS19295 at 4169.968 kb on + strand, within DZA65_RS19295 at 4169.969 kb on - strand, within DZA65_RS19295 at 4169.971 kb on + strand, within DZA65_RS19295 at 4169.972 kb on - strand, within DZA65_RS19295 at 4170.005 kb on - strand, within DZA65_RS19295 at 4170.060 kb on + strand, within DZA65_RS19295 at 4170.073 kb on + strand, within DZA65_RS19295 at 4170.094 kb on - strand, within DZA65_RS19295 at 4170.168 kb on - strand, within DZA65_RS19295 at 4170.262 kb on - strand, within DZA65_RS19295 at 4170.292 kb on - strand, within DZA65_RS19295
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,167,491 + +1.2 4,167,491 + -0.3 4,167,491 + -0.1 4,167,491 + +0.7 4,167,491 + +0.7 4,167,492 - -1.3 4,167,524 + -0.7 4,167,524 + -1.3 4,167,524 + +0.5 4,167,525 - +0.1 4,167,702 + DZA65_RS19280 0.28 -0.3 4,167,702 + DZA65_RS19280 0.28 -0.3 4,167,703 - DZA65_RS19280 0.28 -0.5 4,167,703 - DZA65_RS19280 0.28 +0.5 4,167,703 - DZA65_RS19280 0.28 +0.5 4,167,726 + DZA65_RS19280 0.31 -1.2 4,167,726 + DZA65_RS19280 0.31 +0.9 4,167,726 + DZA65_RS19280 0.31 +0.0 4,167,727 - DZA65_RS19280 0.31 -1.9 4,167,727 - DZA65_RS19280 0.31 -1.0 4,167,727 - DZA65_RS19280 0.31 -1.0 4,167,727 - DZA65_RS19280 0.31 +0.6 4,167,727 - DZA65_RS19280 0.31 +0.5 4,167,795 - DZA65_RS19280 0.40 -0.2 4,167,795 - DZA65_RS19280 0.40 +0.8 4,167,795 - DZA65_RS19280 0.40 -0.1 4,167,795 - DZA65_RS19280 0.40 -0.7 4,167,810 + DZA65_RS19280 0.42 -0.6 4,167,930 + DZA65_RS19280 0.57 -1.5 4,167,930 + DZA65_RS19280 0.57 +0.7 4,167,962 + DZA65_RS19280 0.61 +0.2 4,167,968 + DZA65_RS19280 0.62 +0.7 4,167,968 + DZA65_RS19280 0.62 -1.1 4,167,968 + DZA65_RS19280 0.62 +0.5 4,167,968 + DZA65_RS19280 0.62 +0.7 4,167,969 - DZA65_RS19280 0.62 -0.7 4,167,969 - DZA65_RS19280 0.62 +0.2 4,167,969 - DZA65_RS19280 0.62 -0.0 4,167,969 - DZA65_RS19280 0.62 -0.1 4,167,969 - DZA65_RS19280 0.62 +0.6 4,167,969 - DZA65_RS19280 0.62 +0.2 4,167,999 + DZA65_RS19280 0.66 -0.3 4,167,999 + DZA65_RS19280 0.66 -1.5 4,167,999 + DZA65_RS19280 0.66 +0.9 4,168,000 - DZA65_RS19280 0.66 -0.9 4,168,000 - -0.5 4,168,034 + DZA65_RS19280 0.71 +0.9 4,168,034 + DZA65_RS19280 0.71 +0.5 4,168,214 + -0.3 4,168,214 + +0.3 4,168,214 + -0.4 4,168,214 + -1.2 4,168,214 + -1.5 4,168,215 - +0.9 4,168,215 - -1.1 4,168,215 - -1.5 4,168,215 - -0.5 4,168,257 + -0.9 4,168,265 + -0.7 4,168,265 + -0.1 4,168,265 + +0.7 4,168,266 - +0.7 4,168,270 + -1.1 4,168,270 + -0.4 4,168,270 + +0.0 4,168,270 + -1.0 4,168,270 + -1.9 4,168,270 + -0.5 4,168,270 + +0.1 4,168,270 + +0.8 4,168,271 - -1.2 4,168,271 - -0.0 4,168,271 - -1.1 4,168,271 - -0.5 4,168,271 - +0.1 4,168,271 - -2.1 4,168,271 - -0.1 4,168,307 + -1.2 4,168,307 + +0.9 4,168,308 - -1.0 4,168,342 - -1.2 4,168,401 + +0.1 4,168,412 + -0.2 4,168,412 + +0.8 4,168,413 - -0.2 4,168,414 + -1.4 4,168,415 - -0.3 4,168,415 - +1.1 4,168,415 - -0.9 4,168,428 + +0.6 4,168,428 + -1.7 4,168,437 - -0.1 4,168,530 + -0.2 4,168,531 - +0.2 4,168,531 - -0.9 4,168,537 + DZA65_RS19285 0.10 +0.3 4,168,570 + DZA65_RS19285 0.14 +0.5 4,168,571 - DZA65_RS19285 0.14 +0.7 4,168,571 - DZA65_RS19285 0.14 +0.4 4,168,571 - DZA65_RS19285 0.14 -0.4 4,168,571 - DZA65_RS19285 0.14 +0.9 4,168,620 + DZA65_RS19285 0.20 -0.0 4,168,620 + DZA65_RS19285 0.20 -0.0 4,168,623 + DZA65_RS19285 0.20 -0.1 4,168,624 - DZA65_RS19285 0.20 +0.2 4,168,624 - DZA65_RS19285 0.20 +1.0 4,168,624 - DZA65_RS19285 0.20 -0.3 4,168,645 + DZA65_RS19285 0.23 +0.8 4,168,645 + DZA65_RS19285 0.23 -0.3 4,168,645 + DZA65_RS19285 0.23 +1.1 4,168,666 + DZA65_RS19285 0.25 -0.2 4,168,666 + DZA65_RS19285 0.25 -0.5 4,168,666 + DZA65_RS19285 0.25 +0.5 4,168,666 + DZA65_RS19285 0.25 -2.2 4,168,666 + DZA65_RS19285 0.25 +0.1 4,168,667 - DZA65_RS19285 0.25 -0.6 4,168,680 + DZA65_RS19285 0.27 -0.2 4,168,681 - DZA65_RS19285 0.27 -0.2 4,168,681 - DZA65_RS19285 0.27 +1.0 4,168,763 + DZA65_RS19285 0.37 -0.7 4,168,820 - DZA65_RS19285 0.43 +0.2 4,168,840 + DZA65_RS19285 0.46 +0.0 4,168,840 + DZA65_RS19285 0.46 -1.4 4,168,872 + DZA65_RS19285 0.49 +0.5 4,168,872 + DZA65_RS19285 0.49 -0.5 4,168,872 + DZA65_RS19285 0.49 +0.1 4,168,872 + DZA65_RS19285 0.49 -0.4 4,168,872 + DZA65_RS19285 0.49 +0.5 4,168,877 + DZA65_RS19285 0.50 -0.4 4,168,912 + DZA65_RS19285 0.54 +0.3 4,168,912 + DZA65_RS19285 0.54 -1.7 4,168,912 + DZA65_RS19285 0.54 +1.5 4,168,912 + DZA65_RS19285 0.54 -0.1 4,168,913 - DZA65_RS19285 0.54 -1.0 4,168,913 - DZA65_RS19285 0.54 -1.3 4,168,913 - DZA65_RS19285 0.54 +0.1 4,168,913 - DZA65_RS19285 0.54 -1.0 4,168,913 - DZA65_RS19285 0.54 +0.7 4,168,913 - DZA65_RS19285 0.54 +0.5 4,168,916 + DZA65_RS19285 0.55 -0.4 4,168,916 + DZA65_RS19285 0.55 -0.2 4,168,916 + DZA65_RS19285 0.55 +0.5 4,168,917 - DZA65_RS19285 0.55 +1.7 4,168,917 - DZA65_RS19285 0.55 -0.8 4,168,937 - DZA65_RS19285 0.57 -1.3 4,168,954 + DZA65_RS19285 0.59 +0.5 4,168,955 - DZA65_RS19285 0.59 -0.1 4,168,961 + DZA65_RS19285 0.60 +0.0 4,169,072 + DZA65_RS19285 0.73 +1.1 4,169,072 + DZA65_RS19285 0.73 -0.3 4,169,073 - DZA65_RS19285 0.73 +1.5 4,169,073 - DZA65_RS19285 0.73 +0.7 4,169,073 - DZA65_RS19285 0.73 +1.2 4,169,073 - DZA65_RS19285 0.73 +0.5 4,169,075 - DZA65_RS19285 0.73 -0.8 4,169,075 - DZA65_RS19285 0.73 +1.3 4,169,126 - DZA65_RS19285 0.79 +0.2 4,169,153 - DZA65_RS19285 0.82 +0.3 4,169,225 + -0.1 4,169,226 - +0.0 4,169,227 + -0.1 4,169,227 + -0.5 4,169,228 - +0.7 4,169,256 - -2.0 4,169,304 - -0.5 4,169,306 + -0.6 4,169,383 - DZA65_RS19290 0.13 -0.1 4,169,419 - DZA65_RS19290 0.19 -0.2 4,169,709 + DZA65_RS19290 0.71 +0.8 4,169,775 + DZA65_RS19290 0.82 -0.0 4,169,776 - DZA65_RS19290 0.82 -1.7 4,169,887 + -0.3 4,169,923 + -1.6 4,169,924 - +1.5 4,169,924 - +0.6 4,169,966 - DZA65_RS19295 0.12 -0.9 4,169,966 - DZA65_RS19295 0.12 -0.4 4,169,968 + DZA65_RS19295 0.12 -0.4 4,169,969 - DZA65_RS19295 0.12 -0.1 4,169,971 + DZA65_RS19295 0.12 -1.0 4,169,972 - DZA65_RS19295 0.12 +0.0 4,170,005 - DZA65_RS19295 0.17 -1.1 4,170,060 + DZA65_RS19295 0.24 -0.4 4,170,073 + DZA65_RS19295 0.26 +0.1 4,170,094 - DZA65_RS19295 0.28 -1.5 4,170,168 - DZA65_RS19295 0.38 +0.0 4,170,262 - DZA65_RS19295 0.50 -0.2 4,170,292 - DZA65_RS19295 0.54 -0.9
Or see this region's nucleotide sequence