Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18955

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,093,027	+		DZA65_RS18945	0.73	-1.7
4,093,027	+		DZA65_RS18945	0.73	+1.1
4,093,028	-		DZA65_RS18945	0.73	+0.5
4,093,028	-		DZA65_RS18945	0.73	-2.1
4,093,241	-				+0.4
4,093,287	+				-1.7
4,093,287	+				-0.3
4,093,287	+				-0.8
4,093,287	+				-0.9
4,093,291	+				+0.6
4,093,291	+				-0.2
4,093,291	+				+1.0
4,093,291	+				-0.1
4,093,292	-				-0.1
4,093,292	-				+0.1
4,093,292	-				-1.6
4,093,312	+				-1.1
4,093,312	+				-1.0
4,093,312	+				-0.3
4,093,312	+				+0.4
4,093,312	+				-0.8
4,093,312	+				+0.3
4,093,313	-				+0.3
4,093,313	-				+0.3
4,093,313	-				-1.1
4,093,313	-				+0.4
4,093,430	+				-0.2
4,093,430	+				+1.2
4,093,430	+				+0.4
4,093,431	-				+0.1
4,093,431	-				+1.0
4,093,431	-				-1.3
4,093,431	-				-0.1
4,093,431	-				+1.1
4,093,431	-				+0.0
4,093,439	+				-1.1
4,093,440	-				-0.2
4,093,448	+				-1.4
4,093,472	-				-0.5
4,093,488	+				-1.1
4,093,488	+				-1.0
4,093,489	-				+0.1
4,093,489	-				+1.1
4,093,489	-				+1.4
4,093,507	+				-0.0
4,093,507	+				+1.3
4,093,507	+				-0.0
4,093,508	-				-0.1
4,093,508	-				-0.9
4,093,519	+				-0.9
4,093,519	+				+0.4
4,093,520	-				-0.5
4,093,520	-				-0.3
4,093,567	+		DZA65_RS18950	0.12	+0.2
4,093,567	+		DZA65_RS18950	0.12	-0.6
4,093,567	+		DZA65_RS18950	0.12	-0.7
4,093,567	+		DZA65_RS18950	0.12	+0.3
4,093,568	-		DZA65_RS18950	0.13	-0.3
4,093,597	-		DZA65_RS18950	0.19	+0.0
4,093,597	-		DZA65_RS18950	0.19	-0.1
4,093,619	+		DZA65_RS18950	0.23	-0.1
4,093,619	+		DZA65_RS18950	0.23	-0.8
4,093,619	+		DZA65_RS18950	0.23	+0.2
4,093,619	+		DZA65_RS18950	0.23	-0.6
4,093,620	-		DZA65_RS18950	0.24	+0.0
4,093,620	-		DZA65_RS18950	0.24	-0.6
4,093,620	-		DZA65_RS18950	0.24	-0.7
4,093,620	-		DZA65_RS18950	0.24	-0.1
4,093,620	-		DZA65_RS18950	0.24	+0.3
4,093,620	-		DZA65_RS18950	0.24	-1.1
4,093,620	-		DZA65_RS18950	0.24	+0.4
4,093,647	-		DZA65_RS18950	0.29	-0.7
4,093,647	-		DZA65_RS18950	0.29	+0.6
4,093,647	-		DZA65_RS18950	0.29	+0.3
4,093,647	-		DZA65_RS18950	0.29	+0.2
4,093,691	-		DZA65_RS18950	0.39	-0.1
4,093,747	-		DZA65_RS18950	0.50	-0.1
4,093,806	+		DZA65_RS18950	0.63	-0.5
4,093,806	+		DZA65_RS18950	0.63	-0.5
4,093,806	+		DZA65_RS18950	0.63	+0.4
4,093,807	-		DZA65_RS18950	0.63	-0.4
4,093,807	-		DZA65_RS18950	0.63	+0.2
4,093,807	-		DZA65_RS18950	0.63	-0.4
4,093,807	-		DZA65_RS18950	0.63	-0.6
4,093,807	-		DZA65_RS18950	0.63	+0.6
4,093,907	-		DZA65_RS18950	0.84	-1.3
4,093,963	-				+0.4
4,093,963	-				-0.1
4,093,963	-				-2.3
4,093,963	-				-1.1
4,093,987	+				-0.7
4,093,987	+				-0.4
4,093,987	+				-0.4
4,093,987	+				-0.2
4,093,987	+				-1.0
4,093,987	+				+1.0
4,093,988	-				-0.6
4,094,284	+		DZA65_RS18955	0.43	-1.1
4,094,284	+				+0.1
4,094,285	-		DZA65_RS18955	0.43	+0.4
4,094,389	+		DZA65_RS18955	0.59	+1.4
4,094,390	-		DZA65_RS18955	0.59	+0.0
4,094,396	+		DZA65_RS18955	0.60	+0.4
4,094,397	-		DZA65_RS18955	0.60	-0.6
4,094,397	-		DZA65_RS18955	0.60	+0.3
4,094,397	-		DZA65_RS18955	0.60	+0.7
4,094,407	+		DZA65_RS18955	0.61	-0.6
4,094,425	+		DZA65_RS18955	0.64	+0.2
4,094,425	+		DZA65_RS18955	0.64	+0.1
4,094,426	-		DZA65_RS18955	0.64	+0.4
4,094,426	-		DZA65_RS18955	0.64	+1.2
4,094,467	+		DZA65_RS18955	0.70	+0.5
4,094,467	+		DZA65_RS18955	0.70	+0.7
4,094,567	-		DZA65_RS18955	0.85	-0.8
4,094,600	+		DZA65_RS18955	0.89	+0.4
4,094,600	+				+1.8
4,094,600	+		DZA65_RS18955	0.89	-0.7
4,094,600	+		DZA65_RS18955	0.89	-1.3
4,094,600	+		DZA65_RS18955	0.89	+0.2
4,094,601	-		DZA65_RS18955	0.90	-1.4
4,094,601	-		DZA65_RS18955	0.90	-0.3
4,094,604	+				-0.8
4,094,604	+				+1.2
4,094,604	+				-0.5
4,094,604	+				-1.2
4,094,604	+				-0.6
4,094,604	+				+1.4
4,094,605	-				+0.1
4,094,605	-				-1.5
4,094,667	+				+0.2
4,094,667	+				-1.2
4,094,668	-				-0.1
4,094,668	-				+0.7
4,094,669	+				+0.1
4,094,669	+				+0.2
4,094,670	-				-0.1
4,094,670	-				-0.5
4,094,670	-				+0.0
4,094,694	+				+1.2
4,094,714	-				-0.4
4,094,739	+				+1.2
4,094,739	+				-1.7
4,094,739	+				-1.6
4,094,740	-				+0.0
4,094,750	+				+0.6
4,094,750	+				+0.3
4,094,750	+				-0.3
4,094,750	+				-2.4
4,094,751	-				-2.3
4,094,751	-				+0.0
4,094,751	-				-0.6
4,094,751	-				-0.4
4,094,751	-				-0.3
4,094,751	-				+0.3
4,094,804	+				-0.3
4,094,804	+				+0.1
4,094,804	+				+0.2
4,094,804	+				+0.2
4,094,804	+				+0.6
4,094,805	-				+1.1
4,094,805	-				+0.2
4,094,805	-				-0.3
4,094,861	+				-0.9
4,094,862	-				-1.3
4,094,908	+				-1.6
4,094,908	+				+0.1
4,094,909	-				-0.6
4,094,909	-				+0.7
4,094,909	-				-0.2
4,094,909	-				-0.5
4,094,916	-				+0.2
4,095,023	+		DZA65_RS18960	0.16	-0.1
4,095,023	+		DZA65_RS18960	0.16	-0.6
4,095,041	+		DZA65_RS18960	0.17	+0.2
4,095,072	-		DZA65_RS18960	0.19	+0.3
4,095,113	-		DZA65_RS18960	0.21	+0.1
4,095,113	-		DZA65_RS18960	0.21	-0.8
4,095,146	+		DZA65_RS18960	0.23	-1.1
4,095,146	+		DZA65_RS18960	0.23	-0.2
4,095,146	+		DZA65_RS18960	0.23	+0.6
4,095,146	+		DZA65_RS18960	0.23	+0.5
4,095,147	-		DZA65_RS18960	0.23	-0.9
4,095,147	-		DZA65_RS18960	0.23	+1.7
4,095,147	-		DZA65_RS18960	0.23	-0.2
4,095,156	+		DZA65_RS18960	0.24	-1.4
4,095,156	+		DZA65_RS18960	0.24	-1.1
4,095,156	+		DZA65_RS18960	0.24	-1.6
4,095,156	+		DZA65_RS18960	0.24	-0.7
4,095,156	+		DZA65_RS18960	0.24	-0.1
4,095,156	+		DZA65_RS18960	0.24	-0.8
4,095,157	-		DZA65_RS18960	0.24	-0.1
4,095,255	+		DZA65_RS18960	0.30	+0.6
4,095,266	+		DZA65_RS18960	0.30	+0.0
4,095,266	+		DZA65_RS18960	0.30	+0.3
4,095,266	+		DZA65_RS18960	0.30	+0.9
4,095,266	+		DZA65_RS18960	0.30	+0.0
4,095,266	+		DZA65_RS18960	0.30	+1.1
4,095,266	+		DZA65_RS18960	0.30	-0.4
4,095,267	-		DZA65_RS18960	0.30	-0.5
4,095,267	-		DZA65_RS18960	0.30	+0.1
4,095,267	-		DZA65_RS18960	0.30	-0.4
4,095,267	-		DZA65_RS18960	0.30	-1.9
4,095,267	-		DZA65_RS18960	0.30	+2.3
4,095,278	+		DZA65_RS18960	0.31	-1.1
4,095,278	+		DZA65_RS18960	0.31	+0.4
4,095,278	+		DZA65_RS18960	0.31	+0.9
4,095,278	+		DZA65_RS18960	0.31	+0.9
4,095,279	-		DZA65_RS18960	0.31	+0.0
4,095,359	+		DZA65_RS18960	0.36	-0.3
4,095,372	-				+0.7
4,095,387	-		DZA65_RS18960	0.38	+0.7
4,095,420	+		DZA65_RS18960	0.40	-3.2
4,095,421	-		DZA65_RS18960	0.40	+0.4
4,095,421	-		DZA65_RS18960	0.40	+1.4
4,095,421	-		DZA65_RS18960	0.40	+0.1
4,095,518	+		DZA65_RS18960	0.46	+0.1
4,095,557	+		DZA65_RS18960	0.48	+1.0
4,095,558	-		DZA65_RS18960	0.48	-1.6
4,095,614	+		DZA65_RS18960	0.52	-1.0
4,095,614	+		DZA65_RS18960	0.52	-0.9
4,095,614	+		DZA65_RS18960	0.52	-0.0
4,095,614	+		DZA65_RS18960	0.52	+0.4
4,095,618	+		DZA65_RS18960	0.52	+0.9
4,095,619	-		DZA65_RS18960	0.52	-0.2
4,095,651	+		DZA65_RS18960	0.54	-0.6
4,095,651	+		DZA65_RS18960	0.54	-0.4
4,095,651	+		DZA65_RS18960	0.54	+0.6