Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18875

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,074,890	+		DZA65_RS18870	0.32	+0.1
4,075,037	-		DZA65_RS18870	0.46	-0.3
4,075,067	-		DZA65_RS18870	0.48	-0.4
4,075,080	+		DZA65_RS18870	0.49	-0.4
4,075,080	+		DZA65_RS18870	0.49	+0.3
4,075,080	+		DZA65_RS18870	0.49	-0.1
4,075,081	-		DZA65_RS18870	0.50	+0.3
4,075,081	-		DZA65_RS18870	0.50	-1.6
4,075,091	-		DZA65_RS18870	0.50	+1.6
4,075,091	-		DZA65_RS18870	0.50	+0.4
4,075,161	-		DZA65_RS18870	0.57	+0.2
4,075,161	-		DZA65_RS18870	0.57	-0.6
4,075,161	-		DZA65_RS18870	0.57	-0.0
4,075,390	+		DZA65_RS18870	0.78	+0.2
4,075,514	+		DZA65_RS18870	0.89	-1.1
4,075,577	+				+0.2
4,075,577	+				-0.6
4,075,578	-				+0.1
4,075,589	+				-0.4
4,075,589	+				+0.0
4,075,589	+				-0.1
4,075,590	-				-0.4
4,075,640	+				-0.9
4,075,662	+				-1.1
4,075,662	+				+0.6
4,075,662	+				+1.2
4,075,662	+				-0.3
4,075,663	-				-1.1
4,075,666	+				+1.0
4,075,666	+				-1.1
4,075,666	+				-1.9
4,075,666	+				-1.7
4,075,666	+				-0.2
4,075,666	+				-0.2
4,075,690	+				-0.4
4,075,865	+				-0.5
4,075,865	+				+1.4
4,075,865	+				-1.0
4,075,875	+				-0.7
4,075,875	+				-0.1
4,075,875	+				-0.2
4,075,875	+				+1.1
4,075,875	+				-0.4
4,075,875	+				-0.7
4,075,876	-				+1.1
4,075,876	-				+0.2
4,075,876	-				-0.0
4,075,876	-				-0.6
4,075,951	-		DZA65_RS18875	0.13	-1.0
4,075,964	+		DZA65_RS18875	0.13	-0.4
4,075,994	+				-0.1
4,075,994	+		DZA65_RS18875	0.14	+0.9
4,075,995	-		DZA65_RS18875	0.14	+0.2
4,076,036	+		DZA65_RS18875	0.16	+0.7
4,076,036	+		DZA65_RS18875	0.16	+0.8
4,076,036	+		DZA65_RS18875	0.16	+0.6
4,076,036	+		DZA65_RS18875	0.16	+0.4
4,076,037	-		DZA65_RS18875	0.16	-0.3
4,076,138	+		DZA65_RS18875	0.20	+1.7
4,076,152	+		DZA65_RS18875	0.21	+0.2
4,076,152	+		DZA65_RS18875	0.21	+0.2
4,076,153	-		DZA65_RS18875	0.21	-0.1
4,076,153	-		DZA65_RS18875	0.21	-0.1
4,076,387	+		DZA65_RS18875	0.30	-0.1
4,076,388	-		DZA65_RS18875	0.30	-0.7
4,076,388	-		DZA65_RS18875	0.30	-1.1
4,076,472	+		DZA65_RS18875	0.34	-1.4
4,076,472	+		DZA65_RS18875	0.34	-0.7
4,076,472	+		DZA65_RS18875	0.34	-0.3
4,076,529	-		DZA65_RS18875	0.36	+0.1
4,076,592	+		DZA65_RS18875	0.38	-0.5
4,076,592	+		DZA65_RS18875	0.38	-0.8
4,076,593	-		DZA65_RS18875	0.38	+0.1
4,076,681	+		DZA65_RS18875	0.42	+0.0
4,076,682	-		DZA65_RS18875	0.42	+0.0
4,076,682	-		DZA65_RS18875	0.42	-0.4
4,076,684	+		DZA65_RS18875	0.42	+1.1
4,076,684	+		DZA65_RS18875	0.42	+1.3
4,076,685	-		DZA65_RS18875	0.42	+0.2
4,076,800	+		DZA65_RS18875	0.47	-0.6
4,076,832	-		DZA65_RS18875	0.48	-0.3
4,076,832	-		DZA65_RS18875	0.48	-2.0
4,077,102	+		DZA65_RS18875	0.59	+0.2
4,077,103	-				+0.7
4,077,103	-		DZA65_RS18875	0.59	-1.7
4,077,120	+		DZA65_RS18875	0.60	+0.6
4,077,145	-		DZA65_RS18875	0.61	+0.2
4,077,158	+		DZA65_RS18875	0.61	-0.7
4,077,158	+		DZA65_RS18875	0.61	+1.6
4,077,159	-		DZA65_RS18875	0.61	-0.1
4,077,159	-		DZA65_RS18875	0.61	-0.1
4,077,204	+		DZA65_RS18875	0.63	+1.2
4,077,205	-		DZA65_RS18875	0.63	-0.8
4,077,280	+		DZA65_RS18875	0.66	+0.0
4,077,281	-		DZA65_RS18875	0.66	-0.5
4,077,281	-		DZA65_RS18875	0.66	+0.1
4,077,281	-				+0.4
4,077,290	+		DZA65_RS18875	0.67	-0.6
4,077,290	+		DZA65_RS18875	0.67	-0.5
4,077,290	+		DZA65_RS18875	0.67	-0.1
4,077,290	+		DZA65_RS18875	0.67	-0.3
4,077,291	-		DZA65_RS18875	0.67	-0.0
4,077,291	-		DZA65_RS18875	0.67	-2.8
4,077,291	-		DZA65_RS18875	0.67	+0.4
4,077,291	-		DZA65_RS18875	0.67	+0.6
4,077,291	-		DZA65_RS18875	0.67	-0.4
4,077,293	+		DZA65_RS18875	0.67	-0.1
4,077,294	-		DZA65_RS18875	0.67	+0.8
4,077,493	-		DZA65_RS18875	0.75	+1.2
4,077,596	+		DZA65_RS18875	0.79	-1.0
4,077,699	+		DZA65_RS18875	0.83	+0.2
4,077,700	-		DZA65_RS18875	0.83	-0.7
4,077,760	-		DZA65_RS18875	0.85	+1.4
4,077,760	-		DZA65_RS18875	0.85	+1.2
4,077,804	-		DZA65_RS18875	0.87	+1.8
4,077,823	+		DZA65_RS18875	0.88	+0.0
4,077,823	+		DZA65_RS18875	0.88	+0.1
4,077,823	+		DZA65_RS18875	0.88	-0.3
4,077,823	+		DZA65_RS18875	0.88	+1.2
4,077,823	+		DZA65_RS18875	0.88	+0.1
4,077,823	+		DZA65_RS18875	0.88	+0.0
4,077,823	+		DZA65_RS18875	0.88	+0.2
4,077,823	+		DZA65_RS18875	0.88	-1.6
4,077,823	+		DZA65_RS18875	0.88	-0.4
4,077,823	+		DZA65_RS18875	0.88	-1.4
4,077,823	+		DZA65_RS18875	0.88	-1.7
4,077,824	-		DZA65_RS18875	0.88	-0.1
4,077,824	-		DZA65_RS18875	0.88	+0.4
4,077,824	-		DZA65_RS18875	0.88	-0.4
4,077,824	-		DZA65_RS18875	0.88	-0.3
4,077,824	-				-1.1
4,077,824	-		DZA65_RS18875	0.88	+0.0
4,077,824	-		DZA65_RS18875	0.88	-0.1
4,077,824	-		DZA65_RS18875	0.88	+0.3
4,077,824	-		DZA65_RS18875	0.88	+0.1
4,077,894	+				-0.6
4,077,894	+				+1.4
4,077,946	+				+0.4
4,077,993	+				-0.6
4,077,996	+				+0.2
4,078,008	+				+0.2
4,078,008	+				-0.1
4,078,008	+				+0.3
4,078,008	+				+0.1
4,078,009	-				-0.4
4,078,009	-				+0.3
4,078,046	+				-0.6
4,078,046	+				+1.0
4,078,046	+				-0.6
4,078,046	+				-1.1
4,078,046	+				+0.5
4,078,046	+				-0.1
4,078,047	-				+0.1
4,078,047	-				+0.3
4,078,047	-				+0.1
4,078,047	-				+0.6
4,078,047	-				-1.5
4,078,071	+				+0.1
4,078,071	+				-1.4
4,078,072	-				-0.4
4,078,072	-				-0.7
4,078,201	+				-0.7
4,078,205	+				-0.7
4,078,205	+				-0.6
4,078,215	-				+0.7
4,078,246	+				-0.6
4,078,246	+				+0.0
4,078,264	+				+1.1
4,078,372	-				-1.4
4,078,382	-				-0.6
4,078,396	-				-1.0
4,078,443	+				-0.3
4,078,443	+				+0.4
4,078,445	+				-1.9
4,078,445	+				-0.3
4,078,446	-				-0.9
4,078,446	-				+1.8
4,078,446	-				-1.2
4,078,446	-				-0.0
4,078,501	+				-0.2
4,078,501	+				+0.7
4,078,501	+				-0.7
4,078,502	-				+0.4
4,078,505	+				-0.0
4,078,547	+				-0.4
4,078,548	-				-0.9
4,078,548	-				-1.5
4,078,548	-				-1.4
4,078,550	-				-0.7
4,078,559	-				-0.4
4,078,561	+				+0.6
4,078,566	+				-1.9
4,078,567	-				-1.9
4,078,567	-				-0.7
4,078,567	-				+0.6
4,078,605	+				+0.7
4,078,606	-				-1.9
4,078,607	+				+0.6
4,078,607	+				-2.5
4,078,607	+				-0.9
4,078,607	+				-0.5
4,078,607	+				+0.5
4,078,607	+				-0.7
4,078,607	+				-1.0
4,078,607	+				-0.1
4,078,607	+				-0.9
4,078,607	+				-0.9
4,078,607	+				-1.1
4,078,608	-				+0.2
4,078,608	-				+1.0
4,078,608	-				-0.7
4,078,608	-				-0.6
4,078,608	-				-0.6
4,078,608	-				+1.4
4,078,608	-				+0.4
4,078,608	-				-1.6
4,078,609	+				-0.1
4,078,609	+				+0.1
4,078,609	+				-0.6
4,078,609	+				-0.1
4,078,609	+				-0.5
4,078,609	+				-0.8
4,078,609	+				+0.3
4,078,609	+				-0.1
4,078,609	+				+0.2
4,078,609	+				-0.4
4,078,609	+				-0.9
4,078,609	+				-1.7
4,078,609	+				+0.6
4,078,609	+				+2.4
4,078,609	+				-2.3
4,078,609	+				-1.8
4,078,609	+				-0.7
4,078,609	+				-1.1
4,078,609	+				-1.3
4,078,609	+				-0.6
4,078,610	-				-0.7
4,078,610	-				+0.9
4,078,610	-				+1.6
4,078,610	-				-0.1
4,078,610	-				+1.0
4,078,610	-				-0.4
4,078,610	-				-0.1
4,078,610	-				-0.3
4,078,610	-				+0.1
4,078,610	-				-0.1
4,078,610	-				+1.4
4,078,610	-				+1.4
4,078,610	-				+0.9
4,078,610	-				+0.0
4,078,610	-				+1.1
4,078,610	-				-0.2
4,078,610	-				-0.4
4,078,611	+				+0.7
4,078,611	+				+0.4
4,078,611	+				+0.3
4,078,611	+				-0.7
4,078,612	-				+0.1
4,078,612	-				-0.1
4,078,612	-				-0.2
4,078,612	-				-0.3
4,078,612	-				-0.8
4,078,612	-				-1.0
4,078,670	+				+0.4
4,078,725	-				+1.7
4,078,725	-				-0.4
4,078,732	+				-0.1
4,078,732	+				-0.4
4,078,733	-				-0.4
4,078,734	+				-0.1
4,078,766	+		DZA65_RS18880	0.10	-0.9
4,078,926	+		DZA65_RS18880	0.22	-0.2
4,078,926	+		DZA65_RS18880	0.22	-2.8
4,078,927	-		DZA65_RS18880	0.22	-0.3
4,078,947	+		DZA65_RS18880	0.24	+0.6
4,078,947	+		DZA65_RS18880	0.24	+0.4
4,078,947	+		DZA65_RS18880	0.24	+0.1
4,078,947	+		DZA65_RS18880	0.24	-0.6
4,078,948	-		DZA65_RS18880	0.24	-1.5
4,078,948	-		DZA65_RS18880	0.24	+0.5
4,078,948	-		DZA65_RS18880	0.24	-1.7
4,078,948	-		DZA65_RS18880	0.24	-0.6
4,079,020	+		DZA65_RS18880	0.29	-0.9
4,079,020	+		DZA65_RS18880	0.29	-1.6
4,079,024	+		DZA65_RS18880	0.30	+1.1
4,079,024	+		DZA65_RS18880	0.30	+1.3
4,079,024	+		DZA65_RS18880	0.30	+0.1
4,079,024	+		DZA65_RS18880	0.30	+0.2
4,079,024	+		DZA65_RS18880	0.30	-0.3
4,079,024	+		DZA65_RS18880	0.30	+0.7
4,079,025	-		DZA65_RS18880	0.30	-0.3
4,079,025	-		DZA65_RS18880	0.30	+0.1
4,079,025	-		DZA65_RS18880	0.30	-0.4