Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17925

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,857,629	-		DZA65_RS17915	0.82	-0.6
3,857,632	-		DZA65_RS17915	0.83	+0.1
3,857,643	+		DZA65_RS17915	0.84	+0.9
3,857,643	+		DZA65_RS17915	0.84	-0.6
3,857,644	-		DZA65_RS17915	0.84	-0.9
3,857,644	-		DZA65_RS17915	0.84	+0.3
3,857,644	-		DZA65_RS17915	0.84	-0.8
3,857,646	+		DZA65_RS17915	0.84	-1.3
3,857,646	+		DZA65_RS17915	0.84	-0.6
3,857,646	+		DZA65_RS17915	0.84	-1.1
3,857,646	+		DZA65_RS17915	0.84	-1.6
3,857,646	+		DZA65_RS17915	0.84	+0.1
3,857,646	+		DZA65_RS17915	0.84	+0.6
3,857,646	+				-0.2
3,857,646	+		DZA65_RS17915	0.84	-0.7
3,857,646	+		DZA65_RS17915	0.84	-0.3
3,857,646	+		DZA65_RS17915	0.84	-0.3
3,857,646	+		DZA65_RS17915	0.84	-0.8
3,857,646	+		DZA65_RS17915	0.84	+0.4
3,857,647	-		DZA65_RS17915	0.84	+0.2
3,857,647	-		DZA65_RS17915	0.84	-0.4
3,857,647	-		DZA65_RS17915	0.84	-1.4
3,857,647	-		DZA65_RS17915	0.84	-0.4
3,857,688	+		DZA65_RS17915	0.88	+0.1
3,857,688	+		DZA65_RS17915	0.88	+0.3
3,857,743	-				-1.0
3,857,748	+				-0.4
3,857,748	+				+0.3
3,857,749	-				-1.1
3,857,777	+				-0.2
3,857,777	+				+2.2
3,857,777	+				-2.5
3,857,777	+				+0.7
3,857,777	+				+0.0
3,857,777	+				+0.2
3,857,777	+				-0.4
3,857,777	+				+0.1
3,857,777	+				+0.3
3,857,777	+				+0.4
3,857,777	+				-0.2
3,857,777	+				+0.8
3,857,777	+				-1.1
3,857,778	-				+0.4
3,857,778	-				-0.8
3,857,778	-				+0.1
3,857,778	-				+0.8
3,857,778	-				+0.4
3,857,778	-				-0.8
3,857,778	-				-0.6
3,857,778	-				-1.2
3,857,778	-				-0.2
3,857,778	-				-0.2
3,857,778	-				-0.2
3,857,778	-				+0.2
3,857,778	-				+0.1
3,857,778	-				-0.1
3,857,778	-				-2.1
3,857,778	-				+0.1
3,857,778	-				-0.9
3,857,809	+				-1.3
3,857,809	+				+0.7
3,857,809	+				-1.2
3,857,810	-				+1.9
3,857,810	-				+0.9
3,857,810	-				-1.9
3,857,837	+				+1.1
3,857,838	-				-0.4
3,857,857	+				+0.8
3,857,857	+				+0.6
3,857,858	-				-0.2
3,857,858	-				+0.7
3,857,858	-				-1.1
3,857,862	+				-1.4
3,857,862	+				-0.1
3,857,862	+				-2.3
3,857,862	+				+0.6
3,857,862	+				-0.7
3,857,862	+				-0.2
3,857,862	+				-0.2
3,857,863	-				-0.3
3,857,863	-				-0.0
3,857,863	-				+0.1
3,857,863	-				-0.0
3,857,863	-				+0.2
3,857,863	-				-0.1
3,857,863	-				+0.3
3,857,863	-				-0.8
3,857,876	+				-0.5
3,857,894	+				-0.8
3,857,895	-				-1.6
3,857,905	-				-1.2
3,857,908	+				-0.4
3,857,908	+				-1.2
3,857,908	+				+0.6
3,857,908	+				-1.1
3,857,908	+				+0.1
3,857,908	+				+0.1
3,857,908	+				-1.0
3,857,908	+				-1.8
3,857,908	+				-0.4
3,857,908	+				+0.2
3,857,908	+				-0.4
3,857,908	+				-0.2
3,857,908	+				+1.2
3,857,908	+				-1.6
3,857,909	-				-1.1
3,857,909	-				-0.5
3,857,909	-				+0.7
3,857,909	-				-0.9
3,857,909	-				+0.4
3,857,909	-				-0.1
3,857,909	-				+0.8
3,857,909	-				-1.8
3,857,909	-				-0.4
3,857,909	-				-0.4
3,857,909	-				+0.2
3,857,909	-				-0.4
3,857,909	-				-1.8
3,857,911	+				+0.1
3,857,911	+				+0.2
3,857,911	+				+0.8
3,857,911	+				-1.9
3,857,912	-				-0.4
3,857,912	-				+0.2
3,857,912	-				-0.5
3,857,912	-				-2.6
3,857,912	-				+1.4
3,857,912	-				-0.6
3,857,912	-				-2.0
3,857,912	-				+0.1
3,857,912	-				-1.4
3,857,913	+				-0.2
3,857,913	+				+0.1
3,857,913	+				-0.7
3,857,913	+				-0.0
3,857,913	+				+0.2
3,857,913	+				+0.6
3,857,913	+				-0.3
3,857,913	+				-0.8
3,857,914	-				+0.4
3,857,925	-				-0.5
3,857,958	+				-1.4
3,857,958	+				-1.5
3,857,958	+				+1.1
3,857,958	+				-1.4
3,857,958	+				+0.1
3,857,958	+				+0.3
3,857,958	+				-0.2
3,857,958	+				+0.6
3,857,958	+				-0.7
3,857,958	+				+0.6
3,857,958	+				+0.4
3,857,958	+				+1.2
3,857,958	+				-0.2
3,857,958	+				+1.6
3,857,958	+				+0.0
3,857,958	+				-0.8
3,857,959	-				-0.2
3,857,959	-				-0.3
3,857,959	-				+0.2
3,857,959	-				-1.2
3,857,959	-				-0.5
3,857,959	-				+0.6
3,857,959	-				-0.2
3,857,959	-				-0.9
3,857,959	-				+0.9
3,858,002	-				-0.0
3,858,027	+				-0.9
3,858,027	+				-0.8
3,858,027	+				+0.4
3,858,027	+				-0.6
3,858,027	+				-0.4
3,858,027	+				-1.0
3,858,028	-				-0.4
3,858,028	-				-2.3
3,858,028	-				+0.4
3,858,065	+				-0.4
3,858,066	-				-0.4
3,858,071	+				+0.5
3,858,071	+				-1.8
3,858,076	+				-0.5
3,858,076	+				+1.2
3,858,076	+				+0.0
3,858,076	+				-1.2
3,858,076	+				-1.7
3,858,076	+				-1.3
3,858,076	+				+0.6
3,858,076	+				-0.1
3,858,077	-				-1.1
3,858,077	-				-0.3
3,858,077	-				+0.4
3,858,077	-				-0.7
3,858,077	-				-0.6
3,858,122	+		DZA65_RS17920	0.13	-0.0
3,858,122	+		DZA65_RS17920	0.13	+2.0
3,858,122	+		DZA65_RS17920	0.13	+0.8
3,858,123	-		DZA65_RS17920	0.13	+1.4
3,858,123	-				+1.1
3,858,123	-		DZA65_RS17920	0.13	-0.6
3,858,123	-		DZA65_RS17920	0.13	+0.4
3,858,123	-				+1.4
3,858,177	-		DZA65_RS17920	0.26	+0.5
3,858,209	+		DZA65_RS17920	0.34	-1.0
3,858,289	+		DZA65_RS17920	0.52	-1.4
3,858,364	+		DZA65_RS17920	0.70	-0.9
3,858,365	-		DZA65_RS17920	0.70	-0.5
3,858,395	+		DZA65_RS17920	0.77	-0.0
3,858,395	+		DZA65_RS17920	0.77	+0.5
3,858,395	+		DZA65_RS17920	0.77	+0.1
3,858,395	+		DZA65_RS17920	0.77	-2.1
3,858,395	+		DZA65_RS17920	0.77	+0.0
3,858,396	-		DZA65_RS17920	0.77	-0.3
3,858,396	-		DZA65_RS17920	0.77	-0.1
3,858,396	-		DZA65_RS17920	0.77	+0.1
3,858,410	+		DZA65_RS17920	0.81	+0.6
3,858,431	+		DZA65_RS17920	0.86	+0.5
3,858,431	+		DZA65_RS17920	0.86	-0.4
3,858,431	+		DZA65_RS17920	0.86	-1.0
3,858,431	+		DZA65_RS17920	0.86	+1.4
3,858,432	-		DZA65_RS17920	0.86	+0.7
3,858,432	-		DZA65_RS17920	0.86	-0.5
3,858,432	-		DZA65_RS17920	0.86	-0.5
3,858,432	-		DZA65_RS17920	0.86	-0.5
3,858,432	-		DZA65_RS17920	0.86	+0.2
3,858,489	+				+0.4
3,858,489	+				+1.2
3,858,489	+				-0.2
3,858,530	+				-0.0
3,858,530	+				-0.9
3,858,531	-				-2.3
3,858,531	-				-0.3
3,858,551	+				+0.5
3,858,552	-				+0.7
3,858,628	+				+0.6
3,858,628	+				-0.7
3,858,629	-				-0.4
3,858,751	+		DZA65_RS17925	0.24	-0.4
3,858,751	+		DZA65_RS17925	0.24	-0.9
3,858,751	+		DZA65_RS17925	0.24	-1.6
3,858,752	-		DZA65_RS17925	0.24	-0.4
3,858,752	-		DZA65_RS17925	0.24	+0.8
3,858,752	-		DZA65_RS17925	0.24	-0.6
3,858,752	-		DZA65_RS17925	0.24	+0.7
3,858,752	-		DZA65_RS17925	0.24	-1.0
3,858,782	-		DZA65_RS17925	0.28	-0.2
3,858,782	-		DZA65_RS17925	0.28	-0.8
3,858,785	-		DZA65_RS17925	0.29	-1.7
3,858,887	+		DZA65_RS17925	0.43	+1.1
3,858,887	+				+1.8
3,858,888	-		DZA65_RS17925	0.43	+0.4
3,858,888	-		DZA65_RS17925	0.43	-0.8
3,858,903	+		DZA65_RS17925	0.45	-0.6
3,858,903	+		DZA65_RS17925	0.45	-1.7
3,858,903	+		DZA65_RS17925	0.45	-1.6
3,858,981	+		DZA65_RS17925	0.56	+0.4
3,858,981	+		DZA65_RS17925	0.56	+0.4
3,858,982	-		DZA65_RS17925	0.56	-0.6
3,858,982	-		DZA65_RS17925	0.56	+0.9
3,859,025	-		DZA65_RS17925	0.62	-0.2
3,859,025	-		DZA65_RS17925	0.62	-1.9
3,859,042	+		DZA65_RS17925	0.65	-1.4
3,859,042	+		DZA65_RS17925	0.65	-1.0
3,859,042	+		DZA65_RS17925	0.65	+0.6
3,859,042	+		DZA65_RS17925	0.65	+1.4
3,859,043	-		DZA65_RS17925	0.65	-0.5
3,859,043	-		DZA65_RS17925	0.65	-0.9
3,859,085	+		DZA65_RS17925	0.71	+1.0
3,859,085	+		DZA65_RS17925	0.71	-0.4
3,859,085	+		DZA65_RS17925	0.71	-0.5
3,859,085	+		DZA65_RS17925	0.71	-0.6
3,859,085	+		DZA65_RS17925	0.71	-0.3
3,859,086	-		DZA65_RS17925	0.71	+0.1
3,859,086	-		DZA65_RS17925	0.71	-1.4
3,859,086	-		DZA65_RS17925	0.71	-0.4
3,859,093	-		DZA65_RS17925	0.72	-0.8
3,859,124	-		DZA65_RS17925	0.76	-1.1
3,859,124	-		DZA65_RS17925	0.76	+1.1
3,859,149	+		DZA65_RS17925	0.80	-1.2
3,859,218	-		DZA65_RS17925	0.89	-0.2
3,859,292	+				-1.0
3,859,293	-				-0.1
3,859,293	-				-0.9
3,859,293	-				-1.6
3,859,322	+				-0.5
3,859,322	+				-0.2
3,859,322	+				+0.3
3,859,322	+				-0.5
3,859,322	+				-1.4
3,859,322	+				+0.2
3,859,322	+				-0.5
3,859,323	-				-0.1
3,859,323	-				+0.5
3,859,323	-				+0.6
3,859,323	-				-0.9
3,859,344	+				+1.4
3,859,345	-				-0.6
3,859,478	+				+0.4
3,859,478	+				+0.9
3,859,570	+				-0.2
3,859,610	-		DZA65_RS17930	0.11	+0.1
3,859,683	+		DZA65_RS17930	0.13	-0.1
3,859,784	-		DZA65_RS17930	0.17	-0.6
3,859,784	-		DZA65_RS17930	0.17	-0.8
3,859,784	-		DZA65_RS17930	0.17	+0.0
3,859,816	-		DZA65_RS17930	0.18	-0.5
3,859,853	+		DZA65_RS17930	0.20	+0.7
3,859,853	+		DZA65_RS17930	0.20	-0.2
3,859,853	+		DZA65_RS17930	0.20	-0.3
3,859,854	-		DZA65_RS17930	0.20	-0.2
3,859,858	+		DZA65_RS17930	0.20	-0.5
3,859,957	+		DZA65_RS17930	0.24	-0.7
3,859,957	+		DZA65_RS17930	0.24	-0.6
3,859,957	+		DZA65_RS17930	0.24	-1.0
3,859,957	+				-1.2
3,859,957	+		DZA65_RS17930	0.24	+0.1
3,859,957	+		DZA65_RS17930	0.24	-0.0
3,859,957	+		DZA65_RS17930	0.24	-1.1
3,859,957	+		DZA65_RS17930	0.24	+0.6
3,859,957	+		DZA65_RS17930	0.24	-1.6
3,859,958	-		DZA65_RS17930	0.24	-0.0
3,859,958	-		DZA65_RS17930	0.24	+0.2
3,859,958	-		DZA65_RS17930	0.24	-0.2
3,859,958	-		DZA65_RS17930	0.24	+0.4
3,860,058	+		DZA65_RS17930	0.27	+0.4
3,860,058	+		DZA65_RS17930	0.27	+0.6
3,860,059	-		DZA65_RS17930	0.27	+0.8
3,860,059	-		DZA65_RS17930	0.27	+0.6
3,860,059	-		DZA65_RS17930	0.27	-1.7
3,860,059	-		DZA65_RS17930	0.27	-0.2
3,860,059	-		DZA65_RS17930	0.27	+0.2
3,860,059	-		DZA65_RS17930	0.27	+0.6
3,860,059	-		DZA65_RS17930	0.27	-0.0
3,860,094	-		DZA65_RS17930	0.29	-0.8
3,860,137	+		DZA65_RS17930	0.30	+0.5
3,860,253	+		DZA65_RS17930	0.35	+1.4
3,860,254	-		DZA65_RS17930	0.35	-1.1