Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14880

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,242,216	-		DZA65_RS14870	0.49	+0.0
3,242,225	+		DZA65_RS14870	0.50	+1.2
3,242,225	+		DZA65_RS14870	0.50	+0.3
3,242,225	+		DZA65_RS14870	0.50	-0.1
3,242,226	-		DZA65_RS14870	0.50	-0.1
3,242,226	-		DZA65_RS14870	0.50	-1.0
3,242,345	+		DZA65_RS14870	0.60	-0.3
3,242,346	-		DZA65_RS14870	0.60	-0.1
3,242,346	-		DZA65_RS14870	0.60	-0.4
3,242,346	-		DZA65_RS14870	0.60	-1.1
3,242,407	-		DZA65_RS14870	0.66	-1.5
3,242,571	+		DZA65_RS14870	0.80	+1.0
3,242,598	+		DZA65_RS14870	0.83	+0.7
3,242,598	+		DZA65_RS14870	0.83	-2.1
3,242,598	+		DZA65_RS14870	0.83	-1.8
3,242,599	-		DZA65_RS14870	0.83	-0.9
3,242,599	-		DZA65_RS14870	0.83	+0.2
3,242,599	-		DZA65_RS14870	0.83	+0.8
3,242,599	-				-0.4
3,242,599	-		DZA65_RS14870	0.83	+0.0
3,242,601	+		DZA65_RS14870	0.83	-1.2
3,242,601	+		DZA65_RS14870	0.83	-1.3
3,242,601	+		DZA65_RS14870	0.83	+0.5
3,242,601	+		DZA65_RS14870	0.83	+0.2
3,242,601	+		DZA65_RS14870	0.83	-1.1
3,242,601	+		DZA65_RS14870	0.83	-1.4
3,242,601	+		DZA65_RS14870	0.83	+0.9
3,242,601	+		DZA65_RS14870	0.83	+0.4
3,242,602	-		DZA65_RS14870	0.83	+0.6
3,242,602	-		DZA65_RS14870	0.83	-0.1
3,242,602	-		DZA65_RS14870	0.83	+0.2
3,242,602	-		DZA65_RS14870	0.83	+0.5
3,242,602	-		DZA65_RS14870	0.83	-0.2
3,242,602	-		DZA65_RS14870	0.83	-1.8
3,242,602	-		DZA65_RS14870	0.83	-2.1
3,242,602	-		DZA65_RS14870	0.83	-1.6
3,242,602	-		DZA65_RS14870	0.83	-0.7
3,242,602	-		DZA65_RS14870	0.83	+0.3
3,242,602	-				-0.8
3,242,602	-		DZA65_RS14870	0.83	-0.9
3,242,602	-		DZA65_RS14870	0.83	-2.1
3,242,602	-		DZA65_RS14870	0.83	-0.8
3,242,604	+		DZA65_RS14870	0.83	+0.2
3,242,604	+		DZA65_RS14870	0.83	-0.6
3,242,604	+		DZA65_RS14870	0.83	-0.2
3,242,604	+		DZA65_RS14870	0.83	+0.2
3,242,605	-		DZA65_RS14870	0.83	-0.8
3,242,605	-		DZA65_RS14870	0.83	+0.5
3,242,642	+		DZA65_RS14870	0.87	-0.1
3,242,643	-		DZA65_RS14870	0.87	-0.3
3,242,643	-		DZA65_RS14870	0.87	-0.2
3,242,710	+				+1.2
3,242,711	-				+0.2
3,242,750	+				-0.2
3,242,751	-				+0.1
3,242,751	-				-0.7
3,242,751	-				+0.4
3,242,785	+				-0.4
3,242,795	+				+0.1
3,242,825	+				-0.1
3,242,825	+				-0.8
3,242,857	+				-0.5
3,242,912	+		DZA65_RS14875	0.16	+0.2
3,242,912	+		DZA65_RS14875	0.16	-0.1
3,242,912	+		DZA65_RS14875	0.16	+0.3
3,243,175	+				+0.5
3,243,175	+				-0.5
3,243,175	+				-1.0
3,243,368	+		DZA65_RS14880	0.31	-1.8
3,243,368	+		DZA65_RS14880	0.31	-0.7
3,243,369	-		DZA65_RS14880	0.32	-0.4
3,243,369	-		DZA65_RS14880	0.32	-1.8
3,243,484	+		DZA65_RS14880	0.52	-0.9
3,243,546	+		DZA65_RS14880	0.63	-0.3
3,243,547	-		DZA65_RS14880	0.63	-1.0
3,243,547	-		DZA65_RS14880	0.63	-2.1
3,243,600	+		DZA65_RS14880	0.72	-0.1
3,243,600	+		DZA65_RS14880	0.72	+0.6
3,243,601	-		DZA65_RS14880	0.72	-0.8
3,243,601	-		DZA65_RS14880	0.72	-0.1
3,243,601	-		DZA65_RS14880	0.72	-2.1
3,243,601	-		DZA65_RS14880	0.72	+0.1
3,243,697	+		DZA65_RS14880	0.89	-0.5
3,243,711	+				+0.1
3,243,711	+				-1.0
3,243,712	-				-0.6
3,243,712	-				-0.5
3,243,712	-				-1.3
3,243,756	+				-0.2
3,243,756	+				-1.4
3,243,756	+				-0.4
3,243,756	+				-0.4
3,243,756	+				+0.2
3,243,756	+				+0.1
3,243,756	+				-0.1
3,243,756	+				+1.3
3,243,756	+				-0.5
3,243,756	+				-0.9
3,243,756	+				-0.8
3,243,757	-				-0.4
3,243,757	-				+1.2
3,243,757	-				-0.8
3,243,757	-				-0.4
3,243,757	-				-1.1
3,243,757	-				-0.1
3,243,757	-				+0.5
3,243,757	-				+1.8
3,243,757	-				+0.3
3,243,757	-				-0.6
3,243,757	-				+0.3
3,243,757	-				-0.1
3,243,817	+		DZA65_RS14885	0.14	-0.7
3,243,818	-		DZA65_RS14885	0.14	-0.2
3,243,818	-		DZA65_RS14885	0.14	-0.0
3,243,818	-		DZA65_RS14885	0.14	+0.2
3,244,238	+				-2.1
3,244,238	+				-0.5
3,244,238	+				-0.2
3,244,238	+				-1.1
3,244,238	+				+0.7
3,244,238	+				-2.8
3,244,238	+				-1.4
3,244,238	+				-0.4
3,244,238	+				+0.5
3,244,239	-				+0.2
3,244,239	-				-0.9
3,244,239	-				-0.5
3,244,239	-				+0.6
3,244,239	-				-0.5
3,244,239	-				+0.3
3,244,239	-				+0.0
3,244,359	+				+0.9
3,244,360	-				-0.4
3,244,360	-				-0.8
3,244,413	+				+0.8
3,244,466	+		DZA65_RS14890	0.13	-0.3
3,244,466	+		DZA65_RS14890	0.13	-1.8
3,244,466	+		DZA65_RS14890	0.13	-0.9
3,244,466	+		DZA65_RS14890	0.13	+0.1
3,244,467	-		DZA65_RS14890	0.13	-0.7
3,244,467	-		DZA65_RS14890	0.13	+0.3
3,244,475	-		DZA65_RS14890	0.13	-0.0
3,244,475	-		DZA65_RS14890	0.13	+0.5
3,244,488	+		DZA65_RS14890	0.14	-0.8
3,244,651	+		DZA65_RS14890	0.24	-0.5
3,244,652	-		DZA65_RS14890	0.24	-0.2
3,244,669	-		DZA65_RS14890	0.25	-0.0
3,244,750	+		DZA65_RS14890	0.30	-1.7