Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14785

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,221,098	+		DZA65_RS14780	0.69	-1.0
3,221,110	+		DZA65_RS14780	0.69	-0.4
3,221,111	-		DZA65_RS14780	0.70	-1.1
3,221,111	-		DZA65_RS14780	0.70	-1.5
3,221,111	-		DZA65_RS14780	0.70	-0.4
3,221,248	+		DZA65_RS14780	0.74	+0.3
3,221,248	+		DZA65_RS14780	0.74	-0.8
3,221,248	+		DZA65_RS14780	0.74	-0.3
3,221,248	+		DZA65_RS14780	0.74	-0.0
3,221,248	+		DZA65_RS14780	0.74	+0.8
3,221,248	+		DZA65_RS14780	0.74	+0.9
3,221,249	-				-1.1
3,221,249	-		DZA65_RS14780	0.74	+0.2
3,221,483	+		DZA65_RS14780	0.81	+0.2
3,221,484	-		DZA65_RS14780	0.81	-0.2
3,221,484	-		DZA65_RS14780	0.81	+0.6
3,221,485	+		DZA65_RS14780	0.81	+0.9
3,221,486	-		DZA65_RS14780	0.81	-1.4
3,221,486	-		DZA65_RS14780	0.81	-0.1
3,221,547	+		DZA65_RS14780	0.83	-0.1
3,221,547	+		DZA65_RS14780	0.83	-0.5
3,221,547	+		DZA65_RS14780	0.83	+0.2
3,221,547	+		DZA65_RS14780	0.83	+1.6
3,221,548	-		DZA65_RS14780	0.83	-0.2
3,221,548	-		DZA65_RS14780	0.83	+0.9
3,221,548	-		DZA65_RS14780	0.83	-1.0
3,221,548	-		DZA65_RS14780	0.83	+0.3
3,221,548	-		DZA65_RS14780	0.83	-0.0
3,221,600	+		DZA65_RS14780	0.85	+0.2
3,221,600	+		DZA65_RS14780	0.85	-0.8
3,221,600	+		DZA65_RS14780	0.85	-0.4
3,221,600	+		DZA65_RS14780	0.85	-0.0
3,221,600	+		DZA65_RS14780	0.85	-1.5
3,221,600	+		DZA65_RS14780	0.85	+0.8
3,221,601	-		DZA65_RS14780	0.85	+0.9
3,221,601	-		DZA65_RS14780	0.85	-1.0
3,221,601	-		DZA65_RS14780	0.85	-0.8
3,221,601	-		DZA65_RS14780	0.85	-1.1
3,221,601	-		DZA65_RS14780	0.85	+0.2
3,221,601	-		DZA65_RS14780	0.85	+0.8
3,221,601	-		DZA65_RS14780	0.85	-0.3
3,221,601	-		DZA65_RS14780	0.85	+0.1
3,221,602	+		DZA65_RS14780	0.85	+0.6
3,221,602	+		DZA65_RS14780	0.85	-0.7
3,221,602	+		DZA65_RS14780	0.85	+0.3
3,221,602	+		DZA65_RS14780	0.85	-1.0
3,221,602	+		DZA65_RS14780	0.85	-0.6
3,221,602	+		DZA65_RS14780	0.85	+0.4
3,221,602	+		DZA65_RS14780	0.85	+0.9
3,221,603	-		DZA65_RS14780	0.85	+0.0
3,221,603	-		DZA65_RS14780	0.85	+0.4
3,221,603	-		DZA65_RS14780	0.85	+0.1
3,221,603	-		DZA65_RS14780	0.85	+0.1
3,221,630	+		DZA65_RS14780	0.86	-0.4
3,221,644	+		DZA65_RS14780	0.86	-0.5
3,221,644	+		DZA65_RS14780	0.86	-1.3
3,221,644	+		DZA65_RS14780	0.86	+0.1
3,221,644	+		DZA65_RS14780	0.86	+0.1
3,221,645	-		DZA65_RS14780	0.86	-0.7
3,221,645	-		DZA65_RS14780	0.86	-1.1
3,221,646	+		DZA65_RS14780	0.86	-0.5
3,221,647	-		DZA65_RS14780	0.86	-1.5
3,221,842	+				+0.5
3,221,843	-				+1.8
3,221,843	-				+0.9
3,221,843	-				-0.7
3,221,847	+				+0.2
3,221,847	+				+1.0
3,221,847	+				+0.4
3,221,848	-				+0.2
3,221,848	-				-1.3
3,221,848	-				-0.4
3,222,294	+		DZA65_RS14785	0.19	+1.2
3,222,295	-		DZA65_RS14785	0.19	-0.5
3,222,344	-		DZA65_RS14785	0.23	-0.6
3,222,403	+		DZA65_RS14785	0.28	-1.0
3,222,404	-		DZA65_RS14785	0.29	-0.8
3,222,404	-		DZA65_RS14785	0.29	-1.0
3,222,404	-		DZA65_RS14785	0.29	+0.9
3,222,527	+		DZA65_RS14785	0.39	-0.3
3,222,600	+		DZA65_RS14785	0.46	+0.3
3,222,600	+		DZA65_RS14785	0.46	-0.8
3,222,600	+		DZA65_RS14785	0.46	-0.4
3,222,600	+		DZA65_RS14785	0.46	-2.0
3,222,601	-		DZA65_RS14785	0.46	-0.4
3,222,601	-		DZA65_RS14785	0.46	-0.6
3,222,601	-		DZA65_RS14785	0.46	-2.1
3,222,682	+		DZA65_RS14785	0.53	-2.2
3,222,720	+		DZA65_RS14785	0.56	-0.6
3,222,720	+		DZA65_RS14785	0.56	+0.4
3,222,720	+		DZA65_RS14785	0.56	-0.2
3,222,720	+		DZA65_RS14785	0.56	+0.3
3,222,720	+		DZA65_RS14785	0.56	+0.6
3,222,720	+		DZA65_RS14785	0.56	-1.1
3,222,720	+		DZA65_RS14785	0.56	+1.2
3,222,721	-		DZA65_RS14785	0.56	+0.1
3,222,721	-		DZA65_RS14785	0.56	-0.2
3,222,789	+		DZA65_RS14785	0.62	-0.9
3,222,790	-		DZA65_RS14785	0.62	-0.7
3,222,839	+		DZA65_RS14785	0.66	-1.3
3,222,937	-		DZA65_RS14785	0.75	-0.4
3,222,950	+		DZA65_RS14785	0.76	-0.0
3,222,951	-		DZA65_RS14785	0.76	+1.0
3,222,951	-		DZA65_RS14785	0.76	+0.0
3,222,958	-		DZA65_RS14785	0.77	-0.9
3,222,995	-		DZA65_RS14785	0.80	-1.4
3,222,995	-		DZA65_RS14785	0.80	+0.1
3,222,999	-		DZA65_RS14785	0.80	-0.4
3,222,999	-		DZA65_RS14785	0.80	-0.6
3,223,013	-		DZA65_RS14785	0.82	-1.4
3,223,113	-				-0.6
3,223,199	+				+1.2
3,223,199	+				-0.5
3,223,200	-				-0.1
3,223,204	+				-1.1
3,223,205	-				-0.3
3,223,205	-				+1.0
3,223,213	+				+0.2
3,223,213	+				-0.0
3,223,213	+				+0.2
3,223,214	-				+1.2
3,223,214	-				-1.0
3,223,290	+				-0.5
3,223,290	+				-0.6
3,223,291	-				-1.6
3,223,292	+				-0.7
3,223,293	-				-0.5
3,223,313	+		DZA65_RS14790	0.10	-0.5
3,223,344	+		DZA65_RS14790	0.14	-0.0
3,223,344	+		DZA65_RS14790	0.14	+0.8
3,223,344	+		DZA65_RS14790	0.14	-0.2
3,223,344	+		DZA65_RS14790	0.14	-0.0
3,223,344	+		DZA65_RS14790	0.14	+0.0
3,223,344	+		DZA65_RS14790	0.14	+0.2
3,223,344	+		DZA65_RS14790	0.14	+0.2
3,223,344	+		DZA65_RS14790	0.14	+0.7
3,223,344	+		DZA65_RS14790	0.14	+1.2
3,223,344	+		DZA65_RS14790	0.14	-0.6
3,223,344	+		DZA65_RS14790	0.14	+0.3
3,223,345	-		DZA65_RS14790	0.15	+1.2
3,223,345	-		DZA65_RS14790	0.15	-0.6
3,223,345	-		DZA65_RS14790	0.15	+0.5
3,223,345	-		DZA65_RS14790	0.15	-1.2
3,223,345	-		DZA65_RS14790	0.15	+0.9
3,223,345	-		DZA65_RS14790	0.15	-0.1
3,223,360	-		DZA65_RS14790	0.17	-0.5
3,223,365	+		DZA65_RS14790	0.17	+0.9
3,223,365	+		DZA65_RS14790	0.17	-0.4
3,223,365	+		DZA65_RS14790	0.17	-1.3
3,223,365	+		DZA65_RS14790	0.17	-0.6
3,223,365	+		DZA65_RS14790	0.17	+0.7
3,223,366	-		DZA65_RS14790	0.17	+0.0
3,223,366	-		DZA65_RS14790	0.17	-0.5
3,223,366	-		DZA65_RS14790	0.17	-0.2
3,223,366	-		DZA65_RS14790	0.17	-0.4
3,223,366	-		DZA65_RS14790	0.17	+0.5
3,223,366	-		DZA65_RS14790	0.17	-0.2
3,223,366	-		DZA65_RS14790	0.17	+1.0
3,223,366	-		DZA65_RS14790	0.17	-0.8
3,223,530	+		DZA65_RS14790	0.40	-1.0
3,223,530	+		DZA65_RS14790	0.40	-1.4
3,223,564	-		DZA65_RS14790	0.45	-0.1
3,223,581	-		DZA65_RS14790	0.47	-0.6
3,223,717	-		DZA65_RS14790	0.66	-0.4
3,223,764	+		DZA65_RS14790	0.72	+0.6
3,223,848	-		DZA65_RS14790	0.84	-1.4
3,223,848	-		DZA65_RS14790	0.84	-1.1
3,223,951	-				-0.3
3,223,992	+				-0.6
3,223,992	+				-0.8
3,223,993	-				-1.6
3,223,993	-				-0.2
3,224,032	+				+1.2
3,224,046	+				-0.5
3,224,046	+				-0.8
3,224,046	+				+0.3
3,224,046	+				+0.4
3,224,047	-				+1.2
3,224,047	-				-0.1
3,224,047	-				+0.6