Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14435

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,146,640	+		DZA65_RS14430	0.11	-0.3
3,146,740	+		DZA65_RS14430	0.21	+0.9
3,146,740	+		DZA65_RS14430	0.21	+0.8
3,146,740	+		DZA65_RS14430	0.21	+1.1
3,146,740	+		DZA65_RS14430	0.21	-0.6
3,146,741	-		DZA65_RS14430	0.21	-0.3
3,146,741	-		DZA65_RS14430	0.21	-0.0
3,146,741	-		DZA65_RS14430	0.21	-1.4
3,146,741	-		DZA65_RS14430	0.21	-0.4
3,146,741	-		DZA65_RS14430	0.21	+0.4
3,146,741	-		DZA65_RS14430	0.21	-0.4
3,146,741	-		DZA65_RS14430	0.21	-0.4
3,146,761	+		DZA65_RS14430	0.23	+1.3
3,146,761	+		DZA65_RS14430	0.23	-1.8
3,146,766	+		DZA65_RS14430	0.24	-0.4
3,146,766	+		DZA65_RS14430	0.24	-1.1
3,146,766	+		DZA65_RS14430	0.24	+1.0
3,146,766	+		DZA65_RS14430	0.24	-0.1
3,146,767	-		DZA65_RS14430	0.24	-0.1
3,146,767	-		DZA65_RS14430	0.24	-0.4
3,146,767	-		DZA65_RS14430	0.24	+0.9
3,146,767	-		DZA65_RS14430	0.24	+1.5
3,146,818	+		DZA65_RS14430	0.29	+0.6
3,146,819	-		DZA65_RS14430	0.29	-0.8
3,146,830	+		DZA65_RS14430	0.30	+1.9
3,146,831	-		DZA65_RS14430	0.30	+0.5
3,146,891	+		DZA65_RS14430	0.36	-0.9
3,146,926	+		DZA65_RS14430	0.39	-0.2
3,146,926	+		DZA65_RS14430	0.39	+0.8
3,146,951	+		DZA65_RS14430	0.42	-0.1
3,146,951	+		DZA65_RS14430	0.42	-0.2
3,146,951	+		DZA65_RS14430	0.42	+1.5
3,146,951	+		DZA65_RS14430	0.42	+0.7
3,146,951	+		DZA65_RS14430	0.42	-0.7
3,146,951	+		DZA65_RS14430	0.42	-0.0
3,146,951	+		DZA65_RS14430	0.42	+0.6
3,146,951	+		DZA65_RS14430	0.42	-0.3
3,146,952	-		DZA65_RS14430	0.42	-1.9
3,146,952	-		DZA65_RS14430	0.42	+0.6
3,146,952	-		DZA65_RS14430	0.42	-2.7
3,146,952	-		DZA65_RS14430	0.42	+1.1
3,146,953	+		DZA65_RS14430	0.42	-2.6
3,146,954	-		DZA65_RS14430	0.42	-1.0
3,146,954	-		DZA65_RS14430	0.42	-0.2
3,147,013	+		DZA65_RS14430	0.48	+0.3
3,147,014	-		DZA65_RS14430	0.48	+0.1
3,147,038	-		DZA65_RS14430	0.50	+0.8
3,147,047	+		DZA65_RS14430	0.51	+0.6
3,147,047	+		DZA65_RS14430	0.51	-0.4
3,147,047	+		DZA65_RS14430	0.51	-0.3
3,147,047	+		DZA65_RS14430	0.51	-0.5
3,147,047	+		DZA65_RS14430	0.51	-0.3
3,147,047	+		DZA65_RS14430	0.51	-0.3
3,147,047	+		DZA65_RS14430	0.51	+0.2
3,147,047	+		DZA65_RS14430	0.51	+0.8
3,147,047	+		DZA65_RS14430	0.51	-0.1
3,147,047	+		DZA65_RS14430	0.51	+0.3
3,147,047	+		DZA65_RS14430	0.51	+1.2
3,147,047	+		DZA65_RS14430	0.51	+0.0
3,147,047	+		DZA65_RS14430	0.51	-0.2
3,147,047	+		DZA65_RS14430	0.51	-0.0
3,147,048	-		DZA65_RS14430	0.51	-0.1
3,147,048	-		DZA65_RS14430	0.51	-0.7
3,147,048	-		DZA65_RS14430	0.51	-0.7
3,147,048	-		DZA65_RS14430	0.51	-0.5
3,147,048	-		DZA65_RS14430	0.51	+0.1
3,147,048	-		DZA65_RS14430	0.51	+0.1
3,147,048	-		DZA65_RS14430	0.51	-1.4
3,147,048	-		DZA65_RS14430	0.51	+0.9
3,147,048	-		DZA65_RS14430	0.51	-0.8
3,147,048	-		DZA65_RS14430	0.51	-0.6
3,147,048	-		DZA65_RS14430	0.51	+1.9
3,147,048	-		DZA65_RS14430	0.51	+0.2
3,147,049	+		DZA65_RS14430	0.51	+0.1
3,147,049	+		DZA65_RS14430	0.51	-0.9
3,147,049	+		DZA65_RS14430	0.51	-0.9
3,147,049	+		DZA65_RS14430	0.51	-0.7
3,147,050	-		DZA65_RS14430	0.51	+0.7
3,147,050	-		DZA65_RS14430	0.51	+0.6
3,147,050	-		DZA65_RS14430	0.51	+0.9
3,147,050	-		DZA65_RS14430	0.51	-0.1
3,147,050	-		DZA65_RS14430	0.51	+0.6
3,147,068	+		DZA65_RS14430	0.53	-0.8
3,147,068	+		DZA65_RS14430	0.53	+0.0
3,147,068	+		DZA65_RS14430	0.53	-2.0
3,147,069	-		DZA65_RS14430	0.53	+0.9
3,147,069	-		DZA65_RS14430	0.53	-0.4
3,147,069	-		DZA65_RS14430	0.53	-2.0
3,147,070	+		DZA65_RS14430	0.53	+0.3
3,147,070	+		DZA65_RS14430	0.53	-0.4
3,147,070	+		DZA65_RS14430	0.53	+0.1
3,147,070	+		DZA65_RS14430	0.53	-0.7
3,147,070	+		DZA65_RS14430	0.53	-0.4
3,147,070	+		DZA65_RS14430	0.53	-1.4
3,147,070	+		DZA65_RS14430	0.53	-1.4
3,147,071	-		DZA65_RS14430	0.53	-0.1
3,147,071	-		DZA65_RS14430	0.53	+1.1
3,147,071	-		DZA65_RS14430	0.53	-0.3
3,147,071	-		DZA65_RS14430	0.53	+1.1
3,147,071	-		DZA65_RS14430	0.53	-0.3
3,147,071	-		DZA65_RS14430	0.53	-0.3
3,147,071	-		DZA65_RS14430	0.53	-1.2
3,147,091	-		DZA65_RS14430	0.55	+0.3
3,147,106	+		DZA65_RS14430	0.57	-0.6
3,147,107	-		DZA65_RS14430	0.57	+0.1
3,147,140	+		DZA65_RS14430	0.60	-1.2
3,147,140	+		DZA65_RS14430	0.60	-2.7
3,147,140	+		DZA65_RS14430	0.60	-0.9
3,147,140	+		DZA65_RS14430	0.60	-0.0
3,147,140	+		DZA65_RS14430	0.60	-0.6
3,147,140	+		DZA65_RS14430	0.60	-0.2
3,147,140	+		DZA65_RS14430	0.60	-0.3
3,147,140	+		DZA65_RS14430	0.60	-0.5
3,147,141	-		DZA65_RS14430	0.60	+1.4
3,147,141	-		DZA65_RS14430	0.60	+0.8
3,147,141	-		DZA65_RS14430	0.60	-0.3
3,147,141	-		DZA65_RS14430	0.60	+0.1
3,147,141	-		DZA65_RS14430	0.60	+0.3
3,147,141	-		DZA65_RS14430	0.60	+0.7
3,147,141	-		DZA65_RS14430	0.60	+0.4
3,147,141	-		DZA65_RS14430	0.60	-0.5
3,147,310	+		DZA65_RS14430	0.77	-0.2
3,147,310	+		DZA65_RS14430	0.77	-0.4
3,147,310	+		DZA65_RS14430	0.77	-0.7
3,147,311	-		DZA65_RS14430	0.77	-0.4
3,147,346	+		DZA65_RS14430	0.80	-0.5
3,147,346	+		DZA65_RS14430	0.80	-1.9
3,147,347	-		DZA65_RS14430	0.80	+0.7
3,147,347	-		DZA65_RS14430	0.80	-0.9
3,147,347	-		DZA65_RS14430	0.80	-0.7
3,147,347	-		DZA65_RS14430	0.80	-2.0
3,147,371	+		DZA65_RS14430	0.83	+0.9
3,147,371	+		DZA65_RS14430	0.83	-0.7
3,147,371	+		DZA65_RS14430	0.83	+0.3
3,147,372	-		DZA65_RS14430	0.83	+0.6
3,147,395	-		DZA65_RS14430	0.85	+0.1
3,147,409	-		DZA65_RS14430	0.86	-0.0
3,147,492	-				+0.6
3,147,496	+				+0.1
3,147,497	-				-0.0
3,147,533	-				+0.4
3,147,553	+				-0.0
3,147,553	+				+0.4
3,147,553	+				+1.1
3,147,554	-				+0.2
3,147,554	-				+0.1
3,147,554	-				+0.6
3,147,554	-				+0.1
3,147,558	+				-1.4
3,147,558	+				-0.4
3,147,558	+				-1.3
3,147,559	-				+1.1
3,147,559	-				-0.3
3,147,559	-				+0.6
3,147,629	+		DZA65_RS14435	0.23	-0.6
3,147,630	-		DZA65_RS14435	0.24	+0.0
3,147,630	-		DZA65_RS14435	0.24	-0.1
3,147,630	-		DZA65_RS14435	0.24	-0.4
3,147,680	+		DZA65_RS14435	0.36	-0.8
3,147,680	+		DZA65_RS14435	0.36	+0.4
3,147,748	+		DZA65_RS14435	0.53	-0.3
3,147,748	+		DZA65_RS14435	0.53	+0.3
3,147,748	+				-0.2
3,147,748	+		DZA65_RS14435	0.53	-0.2
3,147,748	+		DZA65_RS14435	0.53	-1.4
3,147,749	-		DZA65_RS14435	0.53	-0.4
3,147,749	-		DZA65_RS14435	0.53	-0.2
3,147,749	-		DZA65_RS14435	0.53	+0.9
3,147,749	-		DZA65_RS14435	0.53	+0.9
3,147,749	-		DZA65_RS14435	0.53	-0.6
3,147,750	+		DZA65_RS14435	0.53	+0.8
3,147,750	+		DZA65_RS14435	0.53	+0.4
3,147,750	+		DZA65_RS14435	0.53	+0.4
3,147,750	+		DZA65_RS14435	0.53	+0.6
3,147,750	+		DZA65_RS14435	0.53	-1.2
3,147,750	+		DZA65_RS14435	0.53	+0.7
3,147,822	+		DZA65_RS14435	0.71	-0.6
3,147,822	+		DZA65_RS14435	0.71	+0.7
3,147,822	+		DZA65_RS14435	0.71	+1.1
3,147,822	+		DZA65_RS14435	0.71	+0.0
3,147,823	-		DZA65_RS14435	0.71	-0.1
3,147,876	+		DZA65_RS14435	0.84	-1.6
3,147,876	+		DZA65_RS14435	0.84	-0.4
3,147,876	+		DZA65_RS14435	0.84	-1.4
3,147,877	-		DZA65_RS14435	0.85	-0.4
3,147,877	-		DZA65_RS14435	0.85	+0.5
3,147,884	+		DZA65_RS14435	0.86	+0.4
3,147,885	-		DZA65_RS14435	0.87	+0.3
3,147,977	+				-0.4
3,147,977	+				-1.4
3,147,977	+				-0.7
3,147,986	+				-0.6
3,147,989	+				-0.8
3,147,989	+				-0.4
3,148,000	+				+2.1
3,148,000	+				+0.3
3,148,000	+				+0.3
3,148,000	+				-0.2
3,148,001	-				-0.4
3,148,001	-				+0.7
3,148,103	+		DZA65_RS14440	0.32	+1.1
3,148,103	+		DZA65_RS14440	0.32	+0.1
3,148,103	+		DZA65_RS14440	0.32	+1.3
3,148,103	+		DZA65_RS14440	0.32	-1.8
3,148,103	+		DZA65_RS14440	0.32	-0.4
3,148,103	+		DZA65_RS14440	0.32	-0.2
3,148,103	+		DZA65_RS14440	0.32	-1.2
3,148,103	+		DZA65_RS14440	0.32	-0.4
3,148,103	+				+0.1
3,148,104	-		DZA65_RS14440	0.33	-0.4
3,148,104	-		DZA65_RS14440	0.33	-2.3
3,148,104	-		DZA65_RS14440	0.33	+0.1
3,148,104	-		DZA65_RS14440	0.33	+0.5
3,148,104	-		DZA65_RS14440	0.33	+0.1
3,148,104	-		DZA65_RS14440	0.33	-1.1
3,148,278	+		DZA65_RS14440	0.90	+0.6
3,148,278	+		DZA65_RS14440	0.90	+1.1
3,148,278	+		DZA65_RS14440	0.90	-0.4
3,148,417	-		DZA65_RS14445	0.26	+1.1
3,148,482	+		DZA65_RS14445	0.50	+0.2
3,148,482	+		DZA65_RS14445	0.50	+0.0
3,148,500	+		DZA65_RS14445	0.56	-0.2
3,148,529	+		DZA65_RS14445	0.67	+0.5
3,148,529	+		DZA65_RS14445	0.67	-1.0
3,148,530	-		DZA65_RS14445	0.67	+0.5
3,148,626	+				-1.2
3,148,626	+				-0.3
3,148,642	+				+1.6
3,148,642	+				+0.2
3,148,642	+				+1.4
3,148,649	+				-0.1
3,148,649	+				+0.2
3,148,649	+				-1.0
3,148,649	+				+0.1
3,148,649	+				-0.7
3,148,650	-				+1.4
3,148,650	-				-0.1
3,148,650	-				+1.4
3,148,650	-				+0.0
3,148,651	+				+0.6
3,148,651	+				-0.6
3,148,652	-				-0.9
3,148,652	-				-1.3
3,148,652	-				-0.3
3,148,652	-				+0.1
3,148,652	-				+0.3
3,148,652	-				-2.2
3,148,652	-				-0.4
3,148,652	-				-0.0
3,148,655	-				+1.3
3,148,678	+				-1.9
3,148,678	+				-1.7
3,148,679	-				-1.6
3,148,679	-				-1.9
3,148,679	-				-0.3
3,148,679	-				-0.3
3,148,679	-				-0.6
3,148,680	+				-0.2
3,148,680	+				+1.0
3,148,680	+				+0.6
3,148,681	-				-0.1
3,148,681	-				-1.9
3,148,734	-		DZA65_RS14450	0.15	+0.1
3,148,740	-		DZA65_RS14450	0.16	+0.1
3,148,740	-				+2.1
3,148,748	+		DZA65_RS14450	0.18	+0.1
3,148,749	-		DZA65_RS14450	0.18	-1.9
3,148,749	-		DZA65_RS14450	0.18	-0.9
3,148,761	+		DZA65_RS14450	0.20	+0.6
3,148,761	+		DZA65_RS14450	0.20	+0.1
3,148,762	-		DZA65_RS14450	0.20	+0.3
3,148,762	-		DZA65_RS14450	0.20	-1.0
3,148,770	-		DZA65_RS14450	0.22	-0.9
3,148,770	-		DZA65_RS14450	0.22	-0.1
3,148,770	-		DZA65_RS14450	0.22	-1.3
3,148,770	-		DZA65_RS14450	0.22	+1.1
3,148,820	+		DZA65_RS14450	0.31	+0.5
3,148,820	+		DZA65_RS14450	0.31	+0.5
3,148,845	+		DZA65_RS14450	0.35	-0.7
3,148,846	-		DZA65_RS14450	0.35	+1.1
3,148,876	+				+1.9
3,148,876	+		DZA65_RS14450	0.41	+0.7
3,148,876	+		DZA65_RS14450	0.41	-1.2
3,148,906	+		DZA65_RS14450	0.46	-0.4
3,148,906	+		DZA65_RS14450	0.46	-0.2
3,148,907	-				+1.9
3,148,912	-		DZA65_RS14450	0.47	-1.1
3,148,921	+		DZA65_RS14450	0.49	-1.3
3,148,921	+		DZA65_RS14450	0.49	-0.9
3,148,922	-		DZA65_RS14450	0.49	-0.2
3,148,922	-		DZA65_RS14450	0.49	-0.4
3,148,922	-		DZA65_RS14450	0.49	-0.8
3,148,925	+		DZA65_RS14450	0.50	+0.3
3,148,933	+		DZA65_RS14450	0.51	-0.8
3,148,933	+		DZA65_RS14450	0.51	+0.9
3,148,933	+		DZA65_RS14450	0.51	+0.4
3,148,933	+		DZA65_RS14450	0.51	+0.3
3,148,933	+		DZA65_RS14450	0.51	-0.9
3,148,933	+		DZA65_RS14450	0.51	-0.7
3,148,933	+		DZA65_RS14450	0.51	-0.8
3,148,934	-		DZA65_RS14450	0.51	-0.5
3,148,934	-		DZA65_RS14450	0.51	+0.6
3,148,934	-		DZA65_RS14450	0.51	-0.7
3,148,935	+		DZA65_RS14450	0.51	-0.8
3,148,936	-		DZA65_RS14450	0.52	-0.5