Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS14305 and DZA65_RS14310 are separated by 75 nucleotides DZA65_RS14310 and DZA65_RS14315 are separated by 384 nucleotides DZA65_RS14315 and DZA65_RS14320 are separated by 161 nucleotides
DZA65_RS14305: DZA65_RS14305 - D-serine/D-alanine/glycine transporter, at 3,123,452 to 3,124,855
_RS14305
DZA65_RS14310: DZA65_RS14310 - LysR family transcriptional regulator, at 3,124,931 to 3,125,197
_RS14310
DZA65_RS14315: DZA65_RS14315 - tRNA-Asn, at 3,125,582 to 3,125,657
_RS14315
DZA65_RS14320: DZA65_RS14320 - integrase arm-type DNA-binding domain-containing protein, at 3,125,819 to 3,127,090
_RS14320
Position (kb) 3125
3126 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3124.609 kb on + strand, within DZA65_RS14305 at 3124.609 kb on + strand, within DZA65_RS14305 at 3124.610 kb on - strand, within DZA65_RS14305 at 3124.625 kb on + strand, within DZA65_RS14305 at 3124.625 kb on + strand, within DZA65_RS14305 at 3124.625 kb on + strand, within DZA65_RS14305 at 3124.625 kb on + strand, within DZA65_RS14305 at 3124.626 kb on - strand, within DZA65_RS14305 at 3124.626 kb on - strand, within DZA65_RS14305 at 3124.626 kb on - strand, within DZA65_RS14305 at 3124.673 kb on + strand, within DZA65_RS14305 at 3124.674 kb on - strand, within DZA65_RS14305 at 3124.674 kb on - strand, within DZA65_RS14305 at 3124.692 kb on + strand, within DZA65_RS14305 at 3124.692 kb on + strand, within DZA65_RS14305 at 3124.692 kb on + strand, within DZA65_RS14305 at 3124.692 kb on + strand, within DZA65_RS14305 at 3124.692 kb on + strand, within DZA65_RS14305 at 3124.692 kb on + strand, within DZA65_RS14305 at 3124.695 kb on + strand, within DZA65_RS14305 at 3124.695 kb on + strand, within DZA65_RS14305 at 3124.695 kb on + strand, within DZA65_RS14305 at 3124.695 kb on + strand, within DZA65_RS14305 at 3124.696 kb on - strand, within DZA65_RS14305 at 3124.696 kb on - strand, within DZA65_RS14305 at 3124.696 kb on - strand, within DZA65_RS14305 at 3124.696 kb on - strand, within DZA65_RS14305 at 3124.708 kb on - strand, within DZA65_RS14305 at 3124.738 kb on - strand at 3124.759 kb on + strand at 3124.780 kb on + strand at 3124.823 kb on - strand at 3124.858 kb on + strand at 3124.858 kb on + strand at 3124.858 kb on + strand at 3124.858 kb on + strand at 3124.858 kb on + strand at 3124.858 kb on + strand at 3124.858 kb on + strand at 3124.858 kb on + strand at 3124.859 kb on - strand at 3124.859 kb on - strand at 3124.859 kb on - strand at 3124.859 kb on - strand at 3124.859 kb on - strand at 3124.859 kb on - strand at 3124.859 kb on - strand at 3124.882 kb on - strand at 3124.892 kb on - strand at 3124.892 kb on - strand at 3124.892 kb on - strand at 3124.924 kb on - strand at 3124.924 kb on - strand at 3125.014 kb on + strand, within DZA65_RS14310 at 3125.047 kb on + strand, within DZA65_RS14310 at 3125.048 kb on - strand, within DZA65_RS14310 at 3125.119 kb on + strand, within DZA65_RS14310 at 3125.175 kb on + strand at 3125.176 kb on - strand at 3125.176 kb on - strand at 3125.176 kb on - strand at 3125.201 kb on + strand at 3125.202 kb on - strand at 3125.212 kb on + strand at 3125.216 kb on + strand at 3125.217 kb on - strand at 3125.286 kb on - strand at 3125.301 kb on - strand at 3125.304 kb on + strand at 3125.304 kb on + strand at 3125.332 kb on - strand at 3125.337 kb on + strand at 3125.337 kb on + strand at 3125.337 kb on + strand at 3125.338 kb on - strand at 3125.340 kb on + strand at 3125.340 kb on + strand at 3125.340 kb on + strand at 3125.340 kb on + strand at 3125.340 kb on + strand at 3125.340 kb on + strand at 3125.340 kb on + strand at 3125.341 kb on - strand at 3125.341 kb on - strand at 3125.411 kb on + strand at 3125.478 kb on + strand at 3125.478 kb on + strand at 3125.521 kb on + strand at 3125.559 kb on + strand at 3125.576 kb on - strand at 3125.602 kb on - strand, within DZA65_RS14315 at 3125.625 kb on - strand, within DZA65_RS14315 at 3125.692 kb on + strand at 3125.714 kb on - strand at 3125.818 kb on + strand at 3125.818 kb on + strand at 3125.818 kb on + strand at 3125.818 kb on + strand at 3125.818 kb on + strand at 3125.818 kb on + strand at 3125.818 kb on + strand at 3125.818 kb on + strand at 3125.818 kb on + strand at 3125.818 kb on + strand at 3125.818 kb on + strand at 3125.818 kb on + strand at 3125.818 kb on + strand at 3125.819 kb on - strand at 3125.819 kb on - strand at 3125.819 kb on - strand at 3125.819 kb on - strand at 3125.819 kb on - strand at 3125.819 kb on - strand at 3125.819 kb on - strand at 3125.819 kb on - strand at 3125.851 kb on - strand at 3125.864 kb on - strand at 3125.877 kb on + strand at 3125.897 kb on + strand at 3125.897 kb on + strand at 3125.898 kb on - strand at 3125.914 kb on + strand at 3125.914 kb on + strand at 3125.942 kb on + strand at 3125.942 kb on + strand at 3125.943 kb on - strand at 3125.943 kb on - strand at 3125.943 kb on - strand at 3125.943 kb on - strand at 3126.052 kb on + strand, within DZA65_RS14320 at 3126.104 kb on - strand, within DZA65_RS14320 at 3126.104 kb on - strand, within DZA65_RS14320 at 3126.199 kb on + strand, within DZA65_RS14320 at 3126.199 kb on + strand, within DZA65_RS14320 at 3126.199 kb on + strand, within DZA65_RS14320 at 3126.199 kb on + strand, within DZA65_RS14320 at 3126.199 kb on + strand, within DZA65_RS14320 at 3126.200 kb on - strand, within DZA65_RS14320 at 3126.200 kb on - strand, within DZA65_RS14320 at 3126.200 kb on - strand, within DZA65_RS14320 at 3126.200 kb on - strand, within DZA65_RS14320 at 3126.200 kb on - strand, within DZA65_RS14320 at 3126.319 kb on + strand, within DZA65_RS14320 at 3126.319 kb on + strand, within DZA65_RS14320 at 3126.319 kb on + strand, within DZA65_RS14320 at 3126.319 kb on + strand, within DZA65_RS14320 at 3126.319 kb on + strand, within DZA65_RS14320 at 3126.319 kb on + strand, within DZA65_RS14320 at 3126.319 kb on + strand, within DZA65_RS14320 at 3126.319 kb on + strand, within DZA65_RS14320 at 3126.319 kb on + strand, within DZA65_RS14320 at 3126.319 kb on + strand, within DZA65_RS14320 at 3126.319 kb on + strand, within DZA65_RS14320 at 3126.319 kb on + strand, within DZA65_RS14320 at 3126.319 kb on + strand, within DZA65_RS14320 at 3126.319 kb on + strand, within DZA65_RS14320 at 3126.319 kb on + strand, within DZA65_RS14320 at 3126.319 kb on + strand, within DZA65_RS14320 at 3126.319 kb on + strand, within DZA65_RS14320 at 3126.319 kb on + strand, within DZA65_RS14320 at 3126.319 kb on + strand, within DZA65_RS14320 at 3126.319 kb on + strand, within DZA65_RS14320 at 3126.319 kb on + strand, within DZA65_RS14320 at 3126.319 kb on + strand, within DZA65_RS14320 at 3126.320 kb on - strand, within DZA65_RS14320 at 3126.320 kb on - strand, within DZA65_RS14320 at 3126.320 kb on - strand, within DZA65_RS14320 at 3126.320 kb on - strand, within DZA65_RS14320 at 3126.320 kb on - strand, within DZA65_RS14320 at 3126.320 kb on - strand, within DZA65_RS14320 at 3126.320 kb on - strand, within DZA65_RS14320 at 3126.320 kb on - strand, within DZA65_RS14320 at 3126.320 kb on - strand, within DZA65_RS14320 at 3126.320 kb on - strand, within DZA65_RS14320 at 3126.320 kb on - strand, within DZA65_RS14320 at 3126.320 kb on - strand, within DZA65_RS14320 at 3126.320 kb on - strand, within DZA65_RS14320 at 3126.320 kb on - strand, within DZA65_RS14320 at 3126.320 kb on - strand, within DZA65_RS14320 at 3126.320 kb on - strand, within DZA65_RS14320 at 3126.320 kb on - strand, within DZA65_RS14320 at 3126.320 kb on - strand, within DZA65_RS14320 at 3126.320 kb on - strand, within DZA65_RS14320 at 3126.320 kb on - strand, within DZA65_RS14320 at 3126.320 kb on - strand, within DZA65_RS14320 at 3126.320 kb on - strand, within DZA65_RS14320 at 3126.320 kb on - strand, within DZA65_RS14320 at 3126.360 kb on + strand, within DZA65_RS14320 at 3126.360 kb on + strand, within DZA65_RS14320 at 3126.360 kb on + strand, within DZA65_RS14320 at 3126.360 kb on + strand, within DZA65_RS14320 at 3126.360 kb on + strand, within DZA65_RS14320 at 3126.361 kb on - strand, within DZA65_RS14320 at 3126.432 kb on + strand, within DZA65_RS14320 at 3126.433 kb on - strand, within DZA65_RS14320 at 3126.473 kb on + strand, within DZA65_RS14320 at 3126.473 kb on + strand, within DZA65_RS14320 at 3126.473 kb on + strand, within DZA65_RS14320 at 3126.473 kb on + strand, within DZA65_RS14320 at 3126.492 kb on + strand, within DZA65_RS14320 at 3126.514 kb on + strand, within DZA65_RS14320 at 3126.515 kb on - strand, within DZA65_RS14320 at 3126.633 kb on - strand, within DZA65_RS14320
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,124,609 + DZA65_RS14305 0.82 -0.7 3,124,609 + DZA65_RS14305 0.82 -0.1 3,124,610 - DZA65_RS14305 0.82 +0.7 3,124,625 + DZA65_RS14305 0.84 -0.1 3,124,625 + DZA65_RS14305 0.84 +0.3 3,124,625 + DZA65_RS14305 0.84 -0.2 3,124,625 + DZA65_RS14305 0.84 +0.9 3,124,626 - DZA65_RS14305 0.84 -0.8 3,124,626 - DZA65_RS14305 0.84 -0.4 3,124,626 - DZA65_RS14305 0.84 -0.1 3,124,673 + DZA65_RS14305 0.87 -0.7 3,124,674 - DZA65_RS14305 0.87 -0.4 3,124,674 - DZA65_RS14305 0.87 -0.0 3,124,692 + DZA65_RS14305 0.88 +0.4 3,124,692 + DZA65_RS14305 0.88 +2.7 3,124,692 + DZA65_RS14305 0.88 -0.1 3,124,692 + DZA65_RS14305 0.88 -1.6 3,124,692 + DZA65_RS14305 0.88 +0.3 3,124,692 + DZA65_RS14305 0.88 +0.7 3,124,695 + DZA65_RS14305 0.89 +0.6 3,124,695 + DZA65_RS14305 0.89 -0.4 3,124,695 + DZA65_RS14305 0.89 +0.4 3,124,695 + DZA65_RS14305 0.89 -0.1 3,124,696 - DZA65_RS14305 0.89 +0.2 3,124,696 - DZA65_RS14305 0.89 +0.9 3,124,696 - DZA65_RS14305 0.89 -1.4 3,124,696 - DZA65_RS14305 0.89 -0.2 3,124,708 - DZA65_RS14305 0.89 -1.4 3,124,738 - -0.9 3,124,759 + +0.4 3,124,780 + -0.7 3,124,823 - -1.3 3,124,858 + +0.6 3,124,858 + -1.6 3,124,858 + -0.3 3,124,858 + +1.1 3,124,858 + +0.9 3,124,858 + +0.1 3,124,858 + +0.3 3,124,858 + -0.4 3,124,859 - +1.0 3,124,859 - -0.9 3,124,859 - -0.0 3,124,859 - +0.1 3,124,859 - +1.7 3,124,859 - -0.7 3,124,859 - +1.0 3,124,882 - -1.4 3,124,892 - -0.2 3,124,892 - -0.7 3,124,892 - -1.9 3,124,924 - -0.8 3,124,924 - +0.3 3,125,014 + DZA65_RS14310 0.31 -0.1 3,125,047 + DZA65_RS14310 0.43 +1.3 3,125,048 - DZA65_RS14310 0.44 +0.4 3,125,119 + DZA65_RS14310 0.70 -0.1 3,125,175 + +0.0 3,125,176 - -0.3 3,125,176 - -0.6 3,125,176 - -0.7 3,125,201 + -0.4 3,125,202 - +0.1 3,125,212 + +0.3 3,125,216 + +0.8 3,125,217 - -0.4 3,125,286 - +0.9 3,125,301 - +0.4 3,125,304 + -0.4 3,125,304 + +0.3 3,125,332 - -1.6 3,125,337 + -2.2 3,125,337 + +0.4 3,125,337 + +0.6 3,125,338 - -1.0 3,125,340 + -0.6 3,125,340 + +1.3 3,125,340 + -0.1 3,125,340 + -0.7 3,125,340 + -0.1 3,125,340 + -0.6 3,125,340 + +0.1 3,125,341 - +0.6 3,125,341 - -0.7 3,125,411 + +0.2 3,125,478 + -2.2 3,125,478 + -0.9 3,125,521 + +0.7 3,125,559 + +0.3 3,125,576 - -0.4 3,125,602 - DZA65_RS14315 0.26 -0.4 3,125,625 - DZA65_RS14315 0.57 +1.5 3,125,692 + -1.1 3,125,714 - -0.4 3,125,818 + -0.4 3,125,818 + -0.9 3,125,818 + +1.1 3,125,818 + -1.3 3,125,818 + -1.8 3,125,818 + +1.4 3,125,818 + +1.4 3,125,818 + -1.1 3,125,818 + +0.0 3,125,818 + -1.1 3,125,818 + -0.9 3,125,818 + -1.1 3,125,818 + -0.1 3,125,819 - -0.3 3,125,819 - -0.4 3,125,819 - +0.1 3,125,819 - +0.4 3,125,819 - -0.7 3,125,819 - +0.7 3,125,819 - +0.0 3,125,819 - +0.1 3,125,851 - -1.2 3,125,864 - -0.1 3,125,877 + -0.2 3,125,897 + -0.1 3,125,897 + -0.4 3,125,898 - +0.4 3,125,914 + +0.4 3,125,914 + -0.5 3,125,942 + -0.5 3,125,942 + +1.9 3,125,943 - -1.2 3,125,943 - +0.9 3,125,943 - +0.5 3,125,943 - -0.2 3,126,052 + DZA65_RS14320 0.18 -0.1 3,126,104 - DZA65_RS14320 0.22 -0.0 3,126,104 - DZA65_RS14320 0.22 -0.4 3,126,199 + DZA65_RS14320 0.30 -0.3 3,126,199 + DZA65_RS14320 0.30 -0.3 3,126,199 + DZA65_RS14320 0.30 -0.2 3,126,199 + DZA65_RS14320 0.30 -0.1 3,126,199 + DZA65_RS14320 0.30 +1.0 3,126,200 - DZA65_RS14320 0.30 -1.4 3,126,200 - DZA65_RS14320 0.30 +1.6 3,126,200 - DZA65_RS14320 0.30 +0.3 3,126,200 - DZA65_RS14320 0.30 +0.9 3,126,200 - DZA65_RS14320 0.30 +0.1 3,126,319 + DZA65_RS14320 0.39 +0.2 3,126,319 + DZA65_RS14320 0.39 +0.3 3,126,319 + DZA65_RS14320 0.39 +0.4 3,126,319 + DZA65_RS14320 0.39 -0.3 3,126,319 + DZA65_RS14320 0.39 -1.9 3,126,319 + DZA65_RS14320 0.39 -1.8 3,126,319 + DZA65_RS14320 0.39 -0.7 3,126,319 + DZA65_RS14320 0.39 -0.1 3,126,319 + DZA65_RS14320 0.39 +0.5 3,126,319 + DZA65_RS14320 0.39 -0.4 3,126,319 + DZA65_RS14320 0.39 -1.7 3,126,319 + DZA65_RS14320 0.39 +2.1 3,126,319 + DZA65_RS14320 0.39 -1.2 3,126,319 + DZA65_RS14320 0.39 -0.9 3,126,319 + DZA65_RS14320 0.39 -0.4 3,126,319 + DZA65_RS14320 0.39 -0.4 3,126,319 + DZA65_RS14320 0.39 +0.5 3,126,319 + DZA65_RS14320 0.39 +0.3 3,126,319 + DZA65_RS14320 0.39 +0.5 3,126,319 + DZA65_RS14320 0.39 -0.4 3,126,319 + DZA65_RS14320 0.39 -1.4 3,126,319 + DZA65_RS14320 0.39 -1.6 3,126,320 - DZA65_RS14320 0.39 -0.0 3,126,320 - DZA65_RS14320 0.39 +0.6 3,126,320 - DZA65_RS14320 0.39 -0.4 3,126,320 - DZA65_RS14320 0.39 -1.4 3,126,320 - DZA65_RS14320 0.39 -0.9 3,126,320 - DZA65_RS14320 0.39 +0.5 3,126,320 - DZA65_RS14320 0.39 -2.2 3,126,320 - DZA65_RS14320 0.39 -0.0 3,126,320 - DZA65_RS14320 0.39 -0.4 3,126,320 - DZA65_RS14320 0.39 +0.0 3,126,320 - DZA65_RS14320 0.39 -0.9 3,126,320 - DZA65_RS14320 0.39 -0.3 3,126,320 - DZA65_RS14320 0.39 +0.7 3,126,320 - DZA65_RS14320 0.39 -1.9 3,126,320 - DZA65_RS14320 0.39 -0.1 3,126,320 - DZA65_RS14320 0.39 +1.4 3,126,320 - DZA65_RS14320 0.39 -1.6 3,126,320 - DZA65_RS14320 0.39 +0.9 3,126,320 - DZA65_RS14320 0.39 -0.2 3,126,320 - DZA65_RS14320 0.39 -1.4 3,126,320 - DZA65_RS14320 0.39 +2.0 3,126,320 - DZA65_RS14320 0.39 +0.6 3,126,320 - DZA65_RS14320 0.39 -0.3 3,126,360 + DZA65_RS14320 0.43 -0.3 3,126,360 + DZA65_RS14320 0.43 -0.0 3,126,360 + DZA65_RS14320 0.43 -0.4 3,126,360 + DZA65_RS14320 0.43 -1.0 3,126,360 + DZA65_RS14320 0.43 -0.4 3,126,361 - DZA65_RS14320 0.43 -0.3 3,126,432 + DZA65_RS14320 0.48 +0.6 3,126,433 - DZA65_RS14320 0.48 -0.4 3,126,473 + DZA65_RS14320 0.51 +2.1 3,126,473 + DZA65_RS14320 0.51 +0.0 3,126,473 + DZA65_RS14320 0.51 +0.5 3,126,473 + DZA65_RS14320 0.51 -0.7 3,126,492 + DZA65_RS14320 0.53 -0.5 3,126,514 + DZA65_RS14320 0.55 -0.1 3,126,515 - DZA65_RS14320 0.55 -0.7 3,126,633 - DZA65_RS14320 0.64 +0.1
Or see this region's nucleotide sequence