Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12740

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,724,613	+		DZA65_RS12735	0.19	+0.9
2,724,614	-		DZA65_RS12735	0.19	+0.8
2,724,628	-		DZA65_RS12735	0.21	-0.7
2,724,719	-		DZA65_RS12735	0.29	-1.5
2,724,719	-		DZA65_RS12735	0.29	-1.5
2,724,744	-		DZA65_RS12735	0.32	-0.3
2,724,896	-		DZA65_RS12735	0.46	-1.1
2,724,896	-		DZA65_RS12735	0.46	-1.2
2,724,901	+		DZA65_RS12735	0.47	-0.1
2,724,901	+		DZA65_RS12735	0.47	-1.9
2,724,901	+		DZA65_RS12735	0.47	+0.1
2,724,902	-		DZA65_RS12735	0.47	-0.5
2,724,902	-		DZA65_RS12735	0.47	+0.7
2,724,902	-		DZA65_RS12735	0.47	-0.9
2,724,902	-		DZA65_RS12735	0.47	-0.6
2,724,902	-		DZA65_RS12735	0.47	-0.6
2,724,902	-		DZA65_RS12735	0.47	-0.6
2,724,905	+		DZA65_RS12735	0.47	+0.5
2,724,905	+		DZA65_RS12735	0.47	-1.4
2,724,905	+		DZA65_RS12735	0.47	-0.7
2,724,905	+		DZA65_RS12735	0.47	-0.5
2,724,905	+		DZA65_RS12735	0.47	+0.7
2,724,906	-		DZA65_RS12735	0.47	+0.5
2,724,906	-		DZA65_RS12735	0.47	-0.4
2,724,906	-		DZA65_RS12735	0.47	+0.6
2,724,906	-		DZA65_RS12735	0.47	-0.2
2,724,906	-		DZA65_RS12735	0.47	-0.8
2,724,906	-		DZA65_RS12735	0.47	+1.3
2,724,906	-		DZA65_RS12735	0.47	+0.5
2,724,949	+		DZA65_RS12735	0.51	-0.2
2,724,950	-		DZA65_RS12735	0.51	+0.5
2,724,950	-		DZA65_RS12735	0.51	+0.1
2,724,950	-		DZA65_RS12735	0.51	-0.3
2,724,950	-		DZA65_RS12735	0.51	+0.5
2,725,028	-		DZA65_RS12735	0.59	-0.0
2,725,198	-		DZA65_RS12735	0.75	-0.9
2,725,213	+		DZA65_RS12735	0.77	+0.2
2,725,263	+		DZA65_RS12735	0.82	+0.7
2,725,263	+		DZA65_RS12735	0.82	-0.3
2,725,264	-		DZA65_RS12735	0.82	+1.3
2,725,264	-		DZA65_RS12735	0.82	+1.1
2,725,264	-		DZA65_RS12735	0.82	-0.7
2,725,273	+		DZA65_RS12735	0.83	-1.9
2,725,273	+		DZA65_RS12735	0.83	+1.1
2,725,273	+		DZA65_RS12735	0.83	+0.1
2,725,273	+				+0.8
2,725,274	-		DZA65_RS12735	0.83	-1.2
2,725,274	-		DZA65_RS12735	0.83	+0.6
2,725,274	-		DZA65_RS12735	0.83	+0.2
2,725,338	+		DZA65_RS12735	0.89	+0.3
2,725,349	+		DZA65_RS12735	0.90	+0.8
2,725,432	-				-1.9
2,725,441	+				-0.3
2,725,441	+				-0.4
2,725,442	-				+0.3
2,725,513	+				-1.9
2,725,513	+				-0.3
2,725,514	-				+1.7
2,725,514	-				-2.1
2,725,514	-				-0.4
2,725,536	+				+0.2
2,725,537	-				-0.5
2,725,538	+				-0.9
2,725,538	+				-0.5
2,725,538	+				-0.5
2,725,539	-				-1.4
2,725,539	-				-0.8
2,725,539	-				-0.5
2,725,679	+		DZA65_RS12740	0.12	-0.3
2,725,680	-		DZA65_RS12740	0.12	-1.2
2,725,713	-		DZA65_RS12740	0.17	+0.9
2,725,713	-		DZA65_RS12740	0.17	+0.3
2,725,713	-		DZA65_RS12740	0.17	-0.9
2,725,713	-		DZA65_RS12740	0.17	-1.6
2,725,713	-		DZA65_RS12740	0.17	-1.5
2,725,764	+		DZA65_RS12740	0.25	-2.2
2,725,764	+		DZA65_RS12740	0.25	-0.5
2,725,765	-		DZA65_RS12740	0.25	-0.7
2,725,765	-		DZA65_RS12740	0.25	-0.9
2,725,765	-		DZA65_RS12740	0.25	-1.5
2,725,765	-		DZA65_RS12740	0.25	-0.5
2,725,765	-		DZA65_RS12740	0.25	-0.1
2,725,765	-		DZA65_RS12740	0.25	+0.3
2,725,765	-		DZA65_RS12740	0.25	-1.2
2,725,771	+		DZA65_RS12740	0.26	-0.0
2,725,771	+		DZA65_RS12740	0.26	-0.3
2,725,771	+		DZA65_RS12740	0.26	-1.2
2,725,772	-		DZA65_RS12740	0.26	+0.1
2,725,772	-		DZA65_RS12740	0.26	-0.6
2,726,028	+		DZA65_RS12740	0.64	-1.2
2,726,073	+		DZA65_RS12740	0.70	+1.1
2,726,074	-		DZA65_RS12740	0.70	+0.8
2,726,165	-		DZA65_RS12740	0.84	-0.0
2,726,238	+				-0.6
2,726,239	-				-0.6
2,726,239	-				+0.4
2,726,239	-				-0.4
2,726,239	-				-0.7
2,726,292	-				-0.4
2,726,366	-				-0.2
2,726,373	-				+1.1
2,726,379	-				-0.7
2,726,388	+				-0.9
2,726,388	+				-0.5
2,726,441	+				-0.7
2,726,441	+				+1.1
2,726,442	-				-1.0
2,726,442	-				-2.3
2,726,532	-				+0.1
2,726,831	+				-0.1
2,726,831	+				+0.5
2,726,831	+				-0.7
2,726,832	-				-0.3
2,726,832	-				+0.6
2,726,832	-				+1.1
2,726,832	-				-0.9
2,726,833	+				-0.6
2,726,833	+				-0.2
2,726,833	+				+0.0
2,726,833	+				-0.2
2,726,833	+				+0.1
2,726,833	+				+0.1
2,726,833	+				-0.3
2,726,833	+				+0.6
2,726,833	+				-1.9
2,726,833	+				-0.5
2,726,833	+				-0.5
2,726,833	+				-0.5
2,726,833	+				+0.2
2,726,833	+				-0.8
2,726,834	-				-1.0
2,726,834	-				+0.8
2,726,834	-				-0.5
2,726,834	-				+1.3
2,726,834	-				+0.4
2,726,834	-				-0.9
2,726,834	-				+0.7
2,726,834	-				+0.7
2,726,834	-				-1.9
2,726,890	+				-0.1
2,726,890	+				+0.8
2,726,890	+				-0.5
2,726,890	+				-2.3
2,726,890	+				+0.4
2,726,891	-				-2.6
2,726,891	-				+1.4
2,727,061	+		DZA65_RS12745	0.19	+1.5
2,727,062	-		DZA65_RS12745	0.19	+0.2
2,727,152	+		DZA65_RS12745	0.28	+0.8
2,727,169	+		DZA65_RS12745	0.29	-1.3
2,727,169	+		DZA65_RS12745	0.29	-0.0
2,727,169	+		DZA65_RS12745	0.29	+0.1
2,727,170	-		DZA65_RS12745	0.29	+0.2
2,727,174	+		DZA65_RS12745	0.30	+2.9
2,727,175	-		DZA65_RS12745	0.30	-0.5
2,727,175	-		DZA65_RS12745	0.30	+0.4
2,727,175	-		DZA65_RS12745	0.30	+1.1
2,727,247	+		DZA65_RS12745	0.36	-0.8
2,727,274	+		DZA65_RS12745	0.39	-0.5