Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11325

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,406,784	+		DZA65_RS11320	0.22	+0.8
2,406,784	+		DZA65_RS11320	0.22	-1.9
2,406,785	-		DZA65_RS11320	0.22	+0.3
2,406,807	+		DZA65_RS11320	0.24	-0.1
2,406,808	-		DZA65_RS11320	0.24	-0.3
2,406,808	-		DZA65_RS11320	0.24	+0.9
2,406,808	-		DZA65_RS11320	0.24	-0.4
2,406,851	+		DZA65_RS11320	0.28	-3.1
2,406,851	+		DZA65_RS11320	0.28	-0.1
2,406,851	+		DZA65_RS11320	0.28	-1.5
2,406,852	-		DZA65_RS11320	0.28	+0.2
2,406,852	-		DZA65_RS11320	0.28	-0.8
2,406,907	-		DZA65_RS11320	0.33	-0.0
2,406,907	-		DZA65_RS11320	0.33	+1.5
2,406,907	-		DZA65_RS11320	0.33	+0.5
2,406,907	-		DZA65_RS11320	0.33	-0.9
2,406,943	+		DZA65_RS11320	0.36	+1.6
2,406,944	-		DZA65_RS11320	0.36	+1.1
2,406,948	+		DZA65_RS11320	0.36	-0.7
2,406,948	+		DZA65_RS11320	0.36	-0.4
2,406,948	+		DZA65_RS11320	0.36	-0.5
2,406,948	+		DZA65_RS11320	0.36	+0.8
2,406,948	+		DZA65_RS11320	0.36	-0.0
2,406,949	-				+0.1
2,406,949	-		DZA65_RS11320	0.36	-1.6
2,406,949	-		DZA65_RS11320	0.36	+0.7
2,406,949	-		DZA65_RS11320	0.36	-0.9
2,406,949	-		DZA65_RS11320	0.36	-1.9
2,406,994	+		DZA65_RS11320	0.40	-0.2
2,407,177	+		DZA65_RS11320	0.57	-1.1
2,407,188	+		DZA65_RS11320	0.58	-0.4
2,407,188	+		DZA65_RS11320	0.58	+0.2
2,407,192	+		DZA65_RS11320	0.58	-0.9
2,407,192	+		DZA65_RS11320	0.58	+0.6
2,407,193	-		DZA65_RS11320	0.58	+0.1
2,407,193	-		DZA65_RS11320	0.58	-0.6
2,407,273	+		DZA65_RS11320	0.65	-1.9
2,407,273	+		DZA65_RS11320	0.65	-0.1
2,407,273	+		DZA65_RS11320	0.65	-0.5
2,407,273	+		DZA65_RS11320	0.65	-0.5
2,407,273	+		DZA65_RS11320	0.65	-1.0
2,407,274	-		DZA65_RS11320	0.65	-0.4
2,407,276	-		DZA65_RS11320	0.65	-0.8
2,407,276	-		DZA65_RS11320	0.65	-0.2
2,407,330	-		DZA65_RS11320	0.70	-0.7
2,407,413	-		DZA65_RS11320	0.78	+1.3
2,407,558	+				-1.0
2,407,558	+				-1.1
2,407,576	+				-1.7
2,407,654	+				-0.2
2,407,655	-				-0.7
2,407,655	-				-0.1
2,407,655	-				-0.2
2,407,655	-				-0.6
2,407,655	-				+0.6
2,407,655	-				-0.1
2,407,709	+				-0.9
2,407,709	+				+0.1
2,407,746	-				-1.2
2,407,832	+				+0.6
2,407,832	+				-0.2
2,407,832	+				+0.5
2,407,832	+				+0.9
2,407,832	+				+0.1
2,407,833	-		DZA65_RS11325	0.10	-1.1
2,407,833	-		DZA65_RS11325	0.10	+0.1
2,407,833	-		DZA65_RS11325	0.10	+0.7
2,407,843	-		DZA65_RS11325	0.11	+0.6
2,407,957	+		DZA65_RS11325	0.24	-0.4
2,407,958	-		DZA65_RS11325	0.24	-0.5
2,407,958	-		DZA65_RS11325	0.24	-0.9
2,407,970	-		DZA65_RS11325	0.25	+0.5
2,407,970	-		DZA65_RS11325	0.25	-0.8
2,408,236	-		DZA65_RS11325	0.55	-0.8
2,408,266	-		DZA65_RS11325	0.59	+0.7
2,408,325	+				+0.3
2,408,325	+		DZA65_RS11325	0.65	-0.1
2,408,325	+		DZA65_RS11325	0.65	-0.3
2,408,326	-		DZA65_RS11325	0.65	-1.1
2,408,326	-		DZA65_RS11325	0.65	+0.1
2,408,326	-		DZA65_RS11325	0.65	-0.5
2,408,372	-		DZA65_RS11325	0.70	+0.3
2,408,431	+		DZA65_RS11325	0.77	+0.9
2,408,431	+		DZA65_RS11325	0.77	+0.3
2,408,432	-		DZA65_RS11325	0.77	-1.4
2,408,633	-				+0.3
2,408,655	+				+0.5
2,408,655	+				+0.3
2,408,655	+				+0.4
2,408,655	+				-0.9
2,408,655	+				+0.7
2,408,656	-				-0.4
2,408,656	-				-0.9
2,408,656	-				-0.5
2,408,656	-				-1.2
2,408,656	-				+0.1
2,408,656	-				-0.3
2,408,657	+				-0.2
2,408,721	-				-1.1
2,408,743	+				+0.4
2,408,744	-				-2.1
2,408,744	-				-0.2
2,408,744	-				-1.1
2,408,744	-				-0.4
2,408,754	+				+0.7
2,408,776	+				+0.9
2,408,777	-				-0.9
2,408,782	+				-0.6
2,408,783	-				-0.4
2,408,783	-				-1.1
2,408,831	+		DZA65_RS11330	0.11	+0.9
2,408,831	+		DZA65_RS11330	0.11	-0.4
2,408,831	+		DZA65_RS11330	0.11	+0.5
2,408,831	+				-1.5
2,408,832	-		DZA65_RS11330	0.11	-1.0
2,408,832	-		DZA65_RS11330	0.11	+0.2
2,408,832	-		DZA65_RS11330	0.11	-0.0
2,408,832	-		DZA65_RS11330	0.11	+0.1
2,408,833	+		DZA65_RS11330	0.11	+0.5
2,408,833	+		DZA65_RS11330	0.11	+1.8
2,408,834	-		DZA65_RS11330	0.11	-0.3
2,408,856	-		DZA65_RS11330	0.16	+0.3
2,408,862	+		DZA65_RS11330	0.17	-1.7
2,408,863	-		DZA65_RS11330	0.17	-0.1
2,408,864	+		DZA65_RS11330	0.17	-0.7
2,408,864	+		DZA65_RS11330	0.17	-1.9
2,408,864	+		DZA65_RS11330	0.17	-0.1
2,408,864	+		DZA65_RS11330	0.17	-1.7
2,408,864	+		DZA65_RS11330	0.17	-0.2
2,408,864	+		DZA65_RS11330	0.17	-1.0
2,408,864	+		DZA65_RS11330	0.17	+1.1
2,408,864	+		DZA65_RS11330	0.17	+0.2
2,408,864	+		DZA65_RS11330	0.17	-0.8
2,408,864	+		DZA65_RS11330	0.17	+1.1
2,408,864	+		DZA65_RS11330	0.17	+0.4
2,408,864	+		DZA65_RS11330	0.17	-1.7
2,408,864	+		DZA65_RS11330	0.17	-2.5
2,408,864	+		DZA65_RS11330	0.17	-0.4
2,408,864	+		DZA65_RS11330	0.17	-1.5
2,408,864	+		DZA65_RS11330	0.17	+0.1
2,408,865	-		DZA65_RS11330	0.17	-0.5
2,408,865	-		DZA65_RS11330	0.17	+0.3
2,408,865	-		DZA65_RS11330	0.17	+1.3
2,408,865	-		DZA65_RS11330	0.17	-1.1
2,408,865	-		DZA65_RS11330	0.17	-1.0
2,408,865	-		DZA65_RS11330	0.17	-0.4
2,408,865	-		DZA65_RS11330	0.17	-0.9
2,408,865	-		DZA65_RS11330	0.17	+0.5
2,408,865	-		DZA65_RS11330	0.17	-0.4
2,408,865	-		DZA65_RS11330	0.17	-1.0
2,408,865	-		DZA65_RS11330	0.17	-0.4
2,408,865	-		DZA65_RS11330	0.17	+0.0
2,408,865	-				+0.5
2,408,865	-		DZA65_RS11330	0.17	+0.8
2,408,865	-		DZA65_RS11330	0.17	-0.1
2,408,865	-		DZA65_RS11330	0.17	+0.8
2,408,897	-		DZA65_RS11330	0.24	+1.1
2,408,972	+		DZA65_RS11330	0.38	-0.5
2,408,972	+		DZA65_RS11330	0.38	-0.5
2,408,972	+		DZA65_RS11330	0.38	-0.1
2,408,979	+		DZA65_RS11330	0.40	-0.1
2,408,979	+		DZA65_RS11330	0.40	+0.6
2,408,980	-		DZA65_RS11330	0.40	+0.1
2,409,134	+		DZA65_RS11330	0.70	+0.6
2,409,134	+		DZA65_RS11330	0.70	-0.5
2,409,187	+		DZA65_RS11330	0.81	-0.6
2,409,187	+		DZA65_RS11330	0.81	-0.8
2,409,188	-		DZA65_RS11330	0.81	+0.6
2,409,190	+		DZA65_RS11330	0.81	-0.8
2,409,190	+		DZA65_RS11330	0.81	-0.7
2,409,191	-		DZA65_RS11330	0.82	+0.4
2,409,221	-		DZA65_RS11330	0.88	-1.0
2,409,221	-		DZA65_RS11330	0.88	+0.3
2,409,232	+		DZA65_RS11330	0.90	+0.4
2,409,233	-				+0.6
2,409,233	-				-0.9
2,409,233	-				-0.7
2,409,233	-				-0.0
2,409,282	-				+0.1
2,409,282	-				+1.1
2,409,328	-				-0.8
2,409,328	-				-0.5
2,409,462	-				+1.1
2,409,517	-				+0.1
2,409,517	-				+0.8
2,409,567	+		DZA65_RS11335	0.11	+0.6
2,409,567	+		DZA65_RS11335	0.11	-0.7
2,409,567	+		DZA65_RS11335	0.11	-0.4
2,409,567	+		DZA65_RS11335	0.11	-0.4
2,409,568	-		DZA65_RS11335	0.11	-0.9
2,409,568	-		DZA65_RS11335	0.11	-2.0