Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09395

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,976,549	+		DZA65_RS09385	0.90	-0.1
1,976,549	+		DZA65_RS09385	0.90	-0.3
1,976,549	+		DZA65_RS09385	0.90	+0.4
1,976,550	-		DZA65_RS09385	0.90	+0.1
1,976,550	-		DZA65_RS09385	0.90	-0.5
1,976,550	-		DZA65_RS09385	0.90	-0.0
1,976,550	-		DZA65_RS09385	0.90	-0.5
1,976,550	-		DZA65_RS09385	0.90	+0.5
1,976,550	-		DZA65_RS09385	0.90	+0.6
1,976,550	-		DZA65_RS09385	0.90	+0.6
1,976,555	+				+1.0
1,976,555	+				+1.0
1,976,556	-				-0.3
1,976,556	-				-0.5
1,976,556	-				+0.9
1,976,559	-				+0.0
1,976,564	+				+1.1
1,976,656	+				-0.9
1,976,657	-				-0.1
1,976,669	+				+1.0
1,976,669	+				+0.4
1,976,670	-				-1.7
1,976,729	+				+0.2
1,976,730	-				+0.2
1,976,738	-				-2.7
1,976,755	-				-0.1
1,976,764	+				-1.1
1,976,765	-				-0.4
1,976,770	+				+1.1
1,976,771	-				-0.8
1,976,773	+				+0.4
1,976,888	-				-0.8
1,976,893	-				+0.4
1,976,981	-				+0.4
1,976,992	+				-1.3
1,977,016	+				-0.9
1,977,026	+				+1.1
1,977,026	+				+0.1
1,977,026	+				+0.4
1,977,027	-				-1.6
1,977,027	-				+0.9
1,977,027	-				-0.1
1,977,027	-				+0.9
1,977,027	-				-0.1
1,977,028	+				-1.3
1,977,028	+				-0.6
1,977,029	-				-0.8
1,977,029	-				-0.9
1,977,029	-				+0.4
1,977,029	-				-0.9
1,977,042	+				-0.1
1,977,042	+				+0.5
1,977,043	-				-0.3
1,977,044	+				-0.4
1,977,044	+				+0.2
1,977,045	-				-0.7
1,977,045	-				+0.1
1,977,045	-				-0.5
1,977,080	-				-0.3
1,977,090	+				-0.9
1,977,118	-		DZA65_RS09390	0.17	+1.1
1,977,118	-		DZA65_RS09390	0.17	+0.2
1,977,150	+		DZA65_RS09390	0.26	+0.3
1,977,150	+		DZA65_RS09390	0.26	+0.2
1,977,150	+		DZA65_RS09390	0.26	+0.3
1,977,150	+		DZA65_RS09390	0.26	-0.0
1,977,151	-		DZA65_RS09390	0.27	-0.3
1,977,172	-		DZA65_RS09390	0.33	-0.9
1,977,172	-		DZA65_RS09390	0.33	+0.0
1,977,179	+		DZA65_RS09390	0.34	-0.4
1,977,232	+		DZA65_RS09390	0.49	-0.2
1,977,232	+		DZA65_RS09390	0.49	+1.4
1,977,239	-		DZA65_RS09390	0.51	-0.0
1,977,255	+		DZA65_RS09390	0.56	+1.0
1,977,255	+		DZA65_RS09390	0.56	-0.5
1,977,268	-		DZA65_RS09390	0.59	-2.5
1,977,268	-		DZA65_RS09390	0.59	-1.0
1,977,355	-		DZA65_RS09390	0.83	-1.6
1,977,429	+				+0.1
1,977,437	-				+0.7
1,977,439	-				-0.9
1,977,439	-				+0.5
1,977,445	+				-0.1
1,977,445	+				+0.6
1,977,446	-				-0.2
1,977,447	+				-1.0
1,977,448	-				-0.3
1,977,448	-				+1.1
1,977,480	-				-1.6
1,977,485	+				-1.9
1,977,485	+				-0.4
1,977,520	+				+0.1
1,977,520	+				+0.6
1,977,521	-				-2.0
1,977,521	-				-0.1
1,977,521	-				+1.1
1,977,521	-				+0.3
1,977,521	-				-0.1
1,977,521	-				-0.7
1,977,655	-				+1.1
1,977,655	-		DZA65_RS09395	0.31	-0.6
1,977,673	-				+0.1
1,977,686	+		DZA65_RS09395	0.39	-1.7
1,977,724	-		DZA65_RS09395	0.50	-2.3
1,977,775	-		DZA65_RS09395	0.64	-0.5
1,977,820	+		DZA65_RS09395	0.77	+0.3
1,977,866	-				+0.3
1,977,918	+				-0.1
1,977,925	+				-0.8
1,977,925	+				+0.7
1,978,184	-				+0.9
1,978,184	-				+0.3
1,978,188	-				+0.1
1,978,222	-				-0.7
1,978,222	-				-2.7
1,978,222	-				+0.1
1,978,226	-				-0.2
1,978,226	-				+0.4
1,978,300	-				+0.7
1,978,325	-				+0.1
1,978,348	-				+1.1
1,978,348	-				-2.2
1,978,388	+				-0.2
1,978,395	+				-0.5
1,978,395	+				+0.3
1,978,396	-				-0.8
1,978,475	-		DZA65_RS09405	0.16	-0.7
1,978,475	-		DZA65_RS09405	0.16	-0.5
1,978,488	-		DZA65_RS09405	0.20	-1.3
1,978,488	-		DZA65_RS09405	0.20	-1.0
1,978,501	+		DZA65_RS09405	0.24	-0.9
1,978,501	+		DZA65_RS09405	0.24	-1.2
1,978,502	-		DZA65_RS09405	0.25	-0.1
1,978,502	-		DZA65_RS09405	0.25	-0.4
1,978,502	-				+0.5
1,978,502	-		DZA65_RS09405	0.25	-0.2
1,978,502	-		DZA65_RS09405	0.25	-0.5
1,978,504	+		DZA65_RS09405	0.25	-0.5
1,978,504	+		DZA65_RS09405	0.25	-0.3
1,978,504	+		DZA65_RS09405	0.25	-0.2
1,978,505	-		DZA65_RS09405	0.26	-0.5
1,978,505	-		DZA65_RS09405	0.26	-0.5
1,978,530	+		DZA65_RS09405	0.34	-0.2
1,978,530	+		DZA65_RS09405	0.34	-0.4
1,978,530	+		DZA65_RS09405	0.34	-0.8
1,978,531	-		DZA65_RS09405	0.34	+0.7
1,978,531	-				+0.5
1,978,531	-		DZA65_RS09405	0.34	-0.5
1,978,531	-		DZA65_RS09405	0.34	+1.9
1,978,531	-		DZA65_RS09405	0.34	-0.3
1,978,531	-		DZA65_RS09405	0.34	-1.3
1,978,531	-		DZA65_RS09405	0.34	-0.5
1,978,607	+		DZA65_RS09405	0.59	+0.9
1,978,608	-		DZA65_RS09405	0.60	+0.6
1,978,674	+		DZA65_RS09405	0.82	-0.0
1,978,675	-		DZA65_RS09405	0.82	-0.3
1,978,675	-		DZA65_RS09405	0.82	-1.3
1,978,731	+				-0.0
1,978,731	+				+0.3
1,978,731	+				-1.2
1,978,731	+				-0.9
1,978,732	-				+0.0
1,978,739	+				+1.1
1,978,740	-				+0.7
1,978,744	-		DZA65_RS09410	0.10	+0.6
1,978,781	+		DZA65_RS09410	0.25	-0.6
1,978,805	+		DZA65_RS09410	0.35	+0.4
1,978,806	-		DZA65_RS09410	0.35	+0.1
1,978,806	-		DZA65_RS09410	0.35	-0.8
1,978,827	+		DZA65_RS09410	0.44	-0.0
1,978,827	+		DZA65_RS09410	0.44	+0.7
1,978,828	-		DZA65_RS09410	0.44	+0.1
1,978,828	-		DZA65_RS09410	0.44	-0.9
1,978,828	-		DZA65_RS09410	0.44	+0.7
1,978,852	+		DZA65_RS09410	0.54	-0.5
1,978,853	-		DZA65_RS09410	0.54	-0.1
1,978,853	-		DZA65_RS09410	0.54	-0.1
1,978,890	-		DZA65_RS09410	0.70	+1.4