Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS09315 and DZA65_RS09320 are separated by 5 nucleotides DZA65_RS09320 and DZA65_RS09325 are separated by 7 nucleotides DZA65_RS09325 and DZA65_RS09330 overlap by 11 nucleotides
DZA65_RS09315: DZA65_RS09315 - ABC transporter permease, at 1,965,451 to 1,966,422
_RS09315
DZA65_RS09320: DZA65_RS09320 - ABC transporter permease, at 1,966,428 to 1,967,273
_RS09320
DZA65_RS09325: DZA65_RS09325 - ATP-binding cassette domain-containing protein, at 1,967,281 to 1,968,270
_RS09325
DZA65_RS09330: DZA65_RS09330 - ATP-binding cassette domain-containing protein, at 1,968,260 to 1,969,237
_RS09330
Position (kb) 1967
1968
1969 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1966.366 kb on + strand at 1966.367 kb on - strand at 1966.367 kb on - strand at 1966.633 kb on - strand, within DZA65_RS09320 at 1966.633 kb on - strand, within DZA65_RS09320 at 1966.633 kb on - strand, within DZA65_RS09320 at 1966.633 kb on - strand, within DZA65_RS09320 at 1966.651 kb on - strand, within DZA65_RS09320 at 1966.782 kb on - strand, within DZA65_RS09320 at 1966.782 kb on - strand, within DZA65_RS09320 at 1966.830 kb on + strand, within DZA65_RS09320 at 1966.830 kb on + strand, within DZA65_RS09320 at 1966.831 kb on - strand, within DZA65_RS09320 at 1966.831 kb on - strand, within DZA65_RS09320 at 1966.831 kb on - strand, within DZA65_RS09320 at 1966.831 kb on - strand, within DZA65_RS09320 at 1966.856 kb on + strand, within DZA65_RS09320 at 1966.856 kb on + strand, within DZA65_RS09320 at 1966.856 kb on + strand, within DZA65_RS09320 at 1966.856 kb on + strand, within DZA65_RS09320 at 1966.857 kb on - strand, within DZA65_RS09320 at 1966.938 kb on + strand, within DZA65_RS09320 at 1966.938 kb on + strand, within DZA65_RS09320 at 1966.938 kb on + strand, within DZA65_RS09320 at 1966.938 kb on + strand, within DZA65_RS09320 at 1966.938 kb on + strand, within DZA65_RS09320 at 1966.939 kb on - strand, within DZA65_RS09320 at 1966.939 kb on - strand, within DZA65_RS09320 at 1966.939 kb on - strand, within DZA65_RS09320 at 1966.939 kb on - strand, within DZA65_RS09320 at 1966.939 kb on - strand, within DZA65_RS09320 at 1966.947 kb on + strand, within DZA65_RS09320 at 1966.994 kb on + strand, within DZA65_RS09320 at 1966.994 kb on + strand, within DZA65_RS09320 at 1966.995 kb on - strand, within DZA65_RS09320 at 1966.995 kb on - strand, within DZA65_RS09320 at 1966.995 kb on - strand, within DZA65_RS09320 at 1966.995 kb on - strand, within DZA65_RS09320 at 1966.995 kb on - strand, within DZA65_RS09320 at 1966.995 kb on - strand, within DZA65_RS09320 at 1966.995 kb on - strand, within DZA65_RS09320 at 1967.018 kb on + strand, within DZA65_RS09320 at 1967.018 kb on + strand, within DZA65_RS09320 at 1967.018 kb on + strand, within DZA65_RS09320 at 1967.018 kb on + strand, within DZA65_RS09320 at 1967.018 kb on + strand, within DZA65_RS09320 at 1967.018 kb on + strand, within DZA65_RS09320 at 1967.018 kb on + strand, within DZA65_RS09320 at 1967.018 kb on + strand, within DZA65_RS09320 at 1967.018 kb on + strand, within DZA65_RS09320 at 1967.019 kb on - strand, within DZA65_RS09320 at 1967.019 kb on - strand, within DZA65_RS09320 at 1967.021 kb on + strand, within DZA65_RS09320 at 1967.021 kb on + strand, within DZA65_RS09320 at 1967.022 kb on - strand, within DZA65_RS09320 at 1967.022 kb on - strand, within DZA65_RS09320 at 1967.022 kb on - strand, within DZA65_RS09320 at 1967.022 kb on - strand, within DZA65_RS09320 at 1967.145 kb on + strand, within DZA65_RS09320 at 1967.145 kb on + strand, within DZA65_RS09320 at 1967.145 kb on + strand, within DZA65_RS09320 at 1967.145 kb on + strand, within DZA65_RS09320 at 1967.145 kb on + strand, within DZA65_RS09320 at 1967.145 kb on + strand, within DZA65_RS09320 at 1967.145 kb on + strand, within DZA65_RS09320 at 1967.145 kb on + strand, within DZA65_RS09320 at 1967.145 kb on + strand, within DZA65_RS09320 at 1967.146 kb on - strand, within DZA65_RS09320 at 1967.146 kb on - strand, within DZA65_RS09320 at 1967.146 kb on - strand, within DZA65_RS09320 at 1967.146 kb on - strand, within DZA65_RS09320 at 1967.146 kb on - strand, within DZA65_RS09320 at 1967.146 kb on - strand, within DZA65_RS09320 at 1967.146 kb on - strand, within DZA65_RS09320 at 1967.146 kb on - strand, within DZA65_RS09320 at 1967.147 kb on + strand, within DZA65_RS09320 at 1967.148 kb on - strand, within DZA65_RS09320 at 1967.148 kb on - strand, within DZA65_RS09320 at 1967.213 kb on + strand at 1967.213 kb on + strand at 1967.213 kb on + strand at 1967.213 kb on + strand at 1967.214 kb on - strand at 1967.221 kb on + strand at 1967.294 kb on + strand at 1967.294 kb on + strand at 1967.295 kb on - strand at 1967.437 kb on - strand, within DZA65_RS09325 at 1967.437 kb on - strand, within DZA65_RS09325 at 1967.437 kb on - strand, within DZA65_RS09325 at 1967.725 kb on + strand, within DZA65_RS09325 at 1967.847 kb on + strand, within DZA65_RS09325 at 1967.848 kb on - strand, within DZA65_RS09325 at 1967.875 kb on - strand, within DZA65_RS09325 at 1967.875 kb on - strand, within DZA65_RS09325 at 1967.875 kb on - strand, within DZA65_RS09325 at 1967.917 kb on - strand, within DZA65_RS09325 at 1967.968 kb on + strand, within DZA65_RS09325 at 1967.968 kb on + strand, within DZA65_RS09325 at 1967.968 kb on + strand, within DZA65_RS09325 at 1967.969 kb on - strand, within DZA65_RS09325 at 1967.969 kb on - strand, within DZA65_RS09325 at 1967.969 kb on - strand, within DZA65_RS09325 at 1967.969 kb on - strand, within DZA65_RS09325 at 1967.969 kb on - strand, within DZA65_RS09325 at 1967.969 kb on - strand, within DZA65_RS09325 at 1967.969 kb on - strand, within DZA65_RS09325 at 1967.969 kb on - strand, within DZA65_RS09325 at 1967.969 kb on - strand, within DZA65_RS09325 at 1967.969 kb on - strand, within DZA65_RS09325 at 1967.969 kb on - strand, within DZA65_RS09325 at 1967.969 kb on - strand, within DZA65_RS09325 at 1967.969 kb on - strand, within DZA65_RS09325 at 1967.969 kb on - strand, within DZA65_RS09325 at 1967.969 kb on - strand, within DZA65_RS09325 at 1968.031 kb on + strand, within DZA65_RS09325 at 1968.031 kb on + strand, within DZA65_RS09325 at 1968.031 kb on + strand, within DZA65_RS09325 at 1968.031 kb on + strand, within DZA65_RS09325 at 1968.166 kb on - strand, within DZA65_RS09325 at 1968.224 kb on + strand at 1968.224 kb on + strand at 1968.225 kb on - strand at 1968.290 kb on - strand at 1968.308 kb on + strand at 1968.311 kb on + strand at 1968.503 kb on - strand, within DZA65_RS09330 at 1968.572 kb on + strand, within DZA65_RS09330 at 1968.638 kb on + strand, within DZA65_RS09330 at 1968.639 kb on - strand, within DZA65_RS09330 at 1968.754 kb on + strand, within DZA65_RS09330 at 1968.754 kb on + strand, within DZA65_RS09330 at 1968.755 kb on - strand, within DZA65_RS09330 at 1968.887 kb on + strand, within DZA65_RS09330 at 1968.888 kb on - strand, within DZA65_RS09330 at 1968.888 kb on - strand, within DZA65_RS09330 at 1968.888 kb on - strand, within DZA65_RS09330 at 1968.895 kb on + strand, within DZA65_RS09330 at 1968.895 kb on + strand, within DZA65_RS09330 at 1968.895 kb on + strand, within DZA65_RS09330 at 1968.896 kb on - strand, within DZA65_RS09330 at 1968.896 kb on - strand, within DZA65_RS09330 at 1968.925 kb on + strand, within DZA65_RS09330 at 1968.925 kb on + strand, within DZA65_RS09330 at 1968.950 kb on + strand, within DZA65_RS09330 at 1968.950 kb on + strand, within DZA65_RS09330 at 1968.950 kb on + strand, within DZA65_RS09330 at 1968.950 kb on + strand, within DZA65_RS09330 at 1968.950 kb on + strand, within DZA65_RS09330 at 1968.950 kb on + strand, within DZA65_RS09330 at 1968.950 kb on + strand, within DZA65_RS09330 at 1968.950 kb on + strand, within DZA65_RS09330 at 1968.950 kb on + strand, within DZA65_RS09330 at 1968.950 kb on + strand, within DZA65_RS09330 at 1968.951 kb on - strand, within DZA65_RS09330 at 1968.951 kb on - strand, within DZA65_RS09330 at 1968.951 kb on - strand, within DZA65_RS09330 at 1968.951 kb on - strand, within DZA65_RS09330 at 1968.951 kb on - strand, within DZA65_RS09330 at 1968.951 kb on - strand, within DZA65_RS09330 at 1968.951 kb on - strand, within DZA65_RS09330 at 1968.951 kb on - strand, within DZA65_RS09330 at 1968.992 kb on + strand, within DZA65_RS09330 at 1968.992 kb on + strand, within DZA65_RS09330 at 1968.992 kb on + strand, within DZA65_RS09330 at 1968.992 kb on + strand, within DZA65_RS09330 at 1968.992 kb on + strand, within DZA65_RS09330 at 1968.992 kb on + strand at 1968.992 kb on + strand, within DZA65_RS09330 at 1968.992 kb on + strand, within DZA65_RS09330 at 1968.992 kb on + strand, within DZA65_RS09330 at 1968.992 kb on + strand, within DZA65_RS09330 at 1968.992 kb on + strand, within DZA65_RS09330 at 1968.993 kb on - strand, within DZA65_RS09330 at 1968.993 kb on - strand, within DZA65_RS09330 at 1968.993 kb on - strand, within DZA65_RS09330 at 1968.993 kb on - strand, within DZA65_RS09330 at 1968.993 kb on - strand, within DZA65_RS09330 at 1968.993 kb on - strand, within DZA65_RS09330 at 1969.013 kb on + strand, within DZA65_RS09330 at 1969.014 kb on - strand, within DZA65_RS09330 at 1969.014 kb on - strand, within DZA65_RS09330 at 1969.121 kb on + strand, within DZA65_RS09330 at 1969.121 kb on + strand, within DZA65_RS09330 at 1969.121 kb on + strand, within DZA65_RS09330 at 1969.121 kb on + strand, within DZA65_RS09330 at 1969.121 kb on + strand, within DZA65_RS09330 at 1969.121 kb on + strand, within DZA65_RS09330 at 1969.122 kb on - strand, within DZA65_RS09330
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,966,366 + -0.3 1,966,367 - -0.5 1,966,367 - -1.2 1,966,633 - DZA65_RS09320 0.24 -0.4 1,966,633 - DZA65_RS09320 0.24 -1.3 1,966,633 - DZA65_RS09320 0.24 -0.1 1,966,633 - DZA65_RS09320 0.24 -0.9 1,966,651 - DZA65_RS09320 0.26 +0.8 1,966,782 - DZA65_RS09320 0.42 -1.3 1,966,782 - DZA65_RS09320 0.42 -1.5 1,966,830 + DZA65_RS09320 0.48 -1.2 1,966,830 + DZA65_RS09320 0.48 -0.2 1,966,831 - DZA65_RS09320 0.48 +0.7 1,966,831 - DZA65_RS09320 0.48 +0.9 1,966,831 - DZA65_RS09320 0.48 -0.6 1,966,831 - DZA65_RS09320 0.48 +0.5 1,966,856 + DZA65_RS09320 0.51 +0.5 1,966,856 + DZA65_RS09320 0.51 -0.2 1,966,856 + DZA65_RS09320 0.51 -0.5 1,966,856 + DZA65_RS09320 0.51 -1.3 1,966,857 - DZA65_RS09320 0.51 +0.5 1,966,938 + DZA65_RS09320 0.60 +0.9 1,966,938 + DZA65_RS09320 0.60 +1.9 1,966,938 + DZA65_RS09320 0.60 +0.5 1,966,938 + DZA65_RS09320 0.60 +0.2 1,966,938 + DZA65_RS09320 0.60 +0.7 1,966,939 - DZA65_RS09320 0.60 +0.1 1,966,939 - DZA65_RS09320 0.60 +0.3 1,966,939 - DZA65_RS09320 0.60 -0.0 1,966,939 - DZA65_RS09320 0.60 -1.3 1,966,939 - DZA65_RS09320 0.60 -0.5 1,966,947 + DZA65_RS09320 0.61 +0.4 1,966,994 + DZA65_RS09320 0.67 -0.9 1,966,994 + DZA65_RS09320 0.67 +0.4 1,966,995 - DZA65_RS09320 0.67 -1.0 1,966,995 - DZA65_RS09320 0.67 +1.9 1,966,995 - DZA65_RS09320 0.67 -0.2 1,966,995 - DZA65_RS09320 0.67 -0.7 1,966,995 - DZA65_RS09320 0.67 +1.3 1,966,995 - DZA65_RS09320 0.67 -1.0 1,966,995 - DZA65_RS09320 0.67 +0.6 1,967,018 + DZA65_RS09320 0.70 -0.3 1,967,018 + DZA65_RS09320 0.70 +1.0 1,967,018 + DZA65_RS09320 0.70 +0.1 1,967,018 + DZA65_RS09320 0.70 +1.4 1,967,018 + DZA65_RS09320 0.70 -0.4 1,967,018 + DZA65_RS09320 0.70 -0.9 1,967,018 + DZA65_RS09320 0.70 +0.1 1,967,018 + DZA65_RS09320 0.70 +0.2 1,967,018 + DZA65_RS09320 0.70 +1.0 1,967,019 - DZA65_RS09320 0.70 +1.1 1,967,019 - DZA65_RS09320 0.70 +0.1 1,967,021 + DZA65_RS09320 0.70 +1.0 1,967,021 + DZA65_RS09320 0.70 -0.1 1,967,022 - DZA65_RS09320 0.70 -1.2 1,967,022 - DZA65_RS09320 0.70 -0.5 1,967,022 - DZA65_RS09320 0.70 +0.3 1,967,022 - DZA65_RS09320 0.70 -1.0 1,967,145 + DZA65_RS09320 0.85 -1.4 1,967,145 + DZA65_RS09320 0.85 +0.1 1,967,145 + DZA65_RS09320 0.85 -2.0 1,967,145 + DZA65_RS09320 0.85 -0.5 1,967,145 + DZA65_RS09320 0.85 -2.6 1,967,145 + DZA65_RS09320 0.85 -0.6 1,967,145 + DZA65_RS09320 0.85 -1.0 1,967,145 + DZA65_RS09320 0.85 +0.4 1,967,145 + DZA65_RS09320 0.85 -0.9 1,967,146 - DZA65_RS09320 0.85 +1.1 1,967,146 - DZA65_RS09320 0.85 -0.6 1,967,146 - DZA65_RS09320 0.85 +0.5 1,967,146 - DZA65_RS09320 0.85 -0.9 1,967,146 - DZA65_RS09320 0.85 -0.0 1,967,146 - DZA65_RS09320 0.85 -0.1 1,967,146 - DZA65_RS09320 0.85 +0.3 1,967,146 - DZA65_RS09320 0.85 +1.3 1,967,147 + DZA65_RS09320 0.85 -0.8 1,967,148 - DZA65_RS09320 0.85 -0.2 1,967,148 - DZA65_RS09320 0.85 -0.8 1,967,213 + +0.2 1,967,213 + -0.2 1,967,213 + -0.6 1,967,213 + +0.3 1,967,214 - -0.5 1,967,221 + -0.1 1,967,294 + -0.2 1,967,294 + +1.1 1,967,295 - -1.5 1,967,437 - DZA65_RS09325 0.16 -0.5 1,967,437 - DZA65_RS09325 0.16 +1.0 1,967,437 - DZA65_RS09325 0.16 +0.5 1,967,725 + DZA65_RS09325 0.45 +0.5 1,967,847 + DZA65_RS09325 0.57 -0.0 1,967,848 - DZA65_RS09325 0.57 +0.2 1,967,875 - DZA65_RS09325 0.60 -0.1 1,967,875 - DZA65_RS09325 0.60 +0.1 1,967,875 - DZA65_RS09325 0.60 -1.7 1,967,917 - DZA65_RS09325 0.64 -0.3 1,967,968 + DZA65_RS09325 0.69 +0.3 1,967,968 + DZA65_RS09325 0.69 -1.0 1,967,968 + DZA65_RS09325 0.69 -0.5 1,967,969 - DZA65_RS09325 0.69 -0.5 1,967,969 - DZA65_RS09325 0.69 +0.1 1,967,969 - DZA65_RS09325 0.69 +1.6 1,967,969 - DZA65_RS09325 0.69 +0.7 1,967,969 - DZA65_RS09325 0.69 +0.7 1,967,969 - DZA65_RS09325 0.69 +0.1 1,967,969 - DZA65_RS09325 0.69 +1.1 1,967,969 - DZA65_RS09325 0.69 +0.1 1,967,969 - DZA65_RS09325 0.69 +2.3 1,967,969 - DZA65_RS09325 0.69 +0.3 1,967,969 - DZA65_RS09325 0.69 +0.3 1,967,969 - DZA65_RS09325 0.69 -0.1 1,967,969 - DZA65_RS09325 0.69 +0.1 1,967,969 - DZA65_RS09325 0.69 -0.9 1,967,969 - DZA65_RS09325 0.69 +0.1 1,968,031 + DZA65_RS09325 0.76 +0.1 1,968,031 + DZA65_RS09325 0.76 -0.5 1,968,031 + DZA65_RS09325 0.76 +1.5 1,968,031 + DZA65_RS09325 0.76 +1.0 1,968,166 - DZA65_RS09325 0.89 -0.4 1,968,224 + -1.7 1,968,224 + -0.6 1,968,225 - -0.7 1,968,290 - -0.9 1,968,308 + +0.5 1,968,311 + -0.5 1,968,503 - DZA65_RS09330 0.25 +0.2 1,968,572 + DZA65_RS09330 0.32 -0.3 1,968,638 + DZA65_RS09330 0.39 +0.4 1,968,639 - DZA65_RS09330 0.39 -0.2 1,968,754 + DZA65_RS09330 0.51 -0.5 1,968,754 + DZA65_RS09330 0.51 -0.7 1,968,755 - DZA65_RS09330 0.51 -2.2 1,968,887 + DZA65_RS09330 0.64 +0.6 1,968,888 - DZA65_RS09330 0.64 +0.5 1,968,888 - DZA65_RS09330 0.64 +0.0 1,968,888 - DZA65_RS09330 0.64 -0.3 1,968,895 + DZA65_RS09330 0.65 +0.5 1,968,895 + DZA65_RS09330 0.65 +0.7 1,968,895 + DZA65_RS09330 0.65 -1.5 1,968,896 - DZA65_RS09330 0.65 +1.7 1,968,896 - DZA65_RS09330 0.65 -1.0 1,968,925 + DZA65_RS09330 0.68 -1.1 1,968,925 + DZA65_RS09330 0.68 -0.6 1,968,950 + DZA65_RS09330 0.71 +0.7 1,968,950 + DZA65_RS09330 0.71 -0.5 1,968,950 + DZA65_RS09330 0.71 +0.6 1,968,950 + DZA65_RS09330 0.71 +1.4 1,968,950 + DZA65_RS09330 0.71 +0.3 1,968,950 + DZA65_RS09330 0.71 +0.6 1,968,950 + DZA65_RS09330 0.71 +0.0 1,968,950 + DZA65_RS09330 0.71 -0.3 1,968,950 + DZA65_RS09330 0.71 -0.1 1,968,950 + DZA65_RS09330 0.71 -1.9 1,968,951 - DZA65_RS09330 0.71 -1.1 1,968,951 - DZA65_RS09330 0.71 -1.3 1,968,951 - DZA65_RS09330 0.71 +0.6 1,968,951 - DZA65_RS09330 0.71 -0.7 1,968,951 - DZA65_RS09330 0.71 +1.4 1,968,951 - DZA65_RS09330 0.71 -1.2 1,968,951 - DZA65_RS09330 0.71 -0.7 1,968,951 - DZA65_RS09330 0.71 +0.3 1,968,992 + DZA65_RS09330 0.75 +0.5 1,968,992 + DZA65_RS09330 0.75 -0.5 1,968,992 + DZA65_RS09330 0.75 -0.3 1,968,992 + DZA65_RS09330 0.75 -1.2 1,968,992 + DZA65_RS09330 0.75 +0.8 1,968,992 + +0.1 1,968,992 + DZA65_RS09330 0.75 -1.5 1,968,992 + DZA65_RS09330 0.75 -0.4 1,968,992 + DZA65_RS09330 0.75 -0.0 1,968,992 + DZA65_RS09330 0.75 +1.1 1,968,992 + DZA65_RS09330 0.75 +0.8 1,968,993 - DZA65_RS09330 0.75 +1.1 1,968,993 - DZA65_RS09330 0.75 +0.4 1,968,993 - DZA65_RS09330 0.75 -1.2 1,968,993 - DZA65_RS09330 0.75 +1.1 1,968,993 - DZA65_RS09330 0.75 +0.3 1,968,993 - DZA65_RS09330 0.75 -0.3 1,969,013 + DZA65_RS09330 0.77 -0.7 1,969,014 - DZA65_RS09330 0.77 -0.2 1,969,014 - DZA65_RS09330 0.77 +0.4 1,969,121 + DZA65_RS09330 0.88 +1.1 1,969,121 + DZA65_RS09330 0.88 -0.4 1,969,121 + DZA65_RS09330 0.88 -0.6 1,969,121 + DZA65_RS09330 0.88 -0.1 1,969,121 + DZA65_RS09330 0.88 -0.2 1,969,121 + DZA65_RS09330 0.88 -1.5 1,969,122 - DZA65_RS09330 0.88 +0.3
Or see this region's nucleotide sequence