Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS09235 and DZA65_RS09240 are separated by 29 nucleotides DZA65_RS09240 and DZA65_RS09245 are separated by 74 nucleotides DZA65_RS09245 and DZA65_RS09250 are separated by 1 nucleotides DZA65_RS09250 and DZA65_RS09255 are separated by 1 nucleotides
DZA65_RS09235: DZA65_RS09235 - 5-oxoprolinase subunit PxpA, at 1,948,850 to 1,949,632
_RS09235
DZA65_RS09240: DZA65_RS09240 - biotin carboxyl carrier domain-containing protein, at 1,949,662 to 1,949,910
_RS09240
DZA65_RS09245: DZA65_RS09245 - acetyl-CoA carboxylase biotin carboxylase subunit, at 1,949,985 to 1,951,370
_RS09245
DZA65_RS09250: DZA65_RS09250 - allophanate hydrolase subunit 1, at 1,951,372 to 1,952,256
_RS09250
DZA65_RS09255: DZA65_RS09255 - biotin-dependent carboxyltransferase, at 1,952,258 to 1,953,265
_RS09255
Position (kb) 1949
1950
1951
1952 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1949.086 kb on + strand, within DZA65_RS09235 at 1949.086 kb on + strand, within DZA65_RS09235 at 1949.087 kb on - strand, within DZA65_RS09235 at 1949.127 kb on - strand, within DZA65_RS09235 at 1949.162 kb on + strand, within DZA65_RS09235 at 1949.162 kb on + strand, within DZA65_RS09235 at 1949.162 kb on + strand, within DZA65_RS09235 at 1949.162 kb on + strand, within DZA65_RS09235 at 1949.169 kb on + strand, within DZA65_RS09235 at 1949.204 kb on + strand, within DZA65_RS09235 at 1949.204 kb on + strand, within DZA65_RS09235 at 1949.205 kb on - strand, within DZA65_RS09235 at 1949.205 kb on - strand, within DZA65_RS09235 at 1949.205 kb on - strand, within DZA65_RS09235 at 1949.205 kb on - strand, within DZA65_RS09235 at 1949.206 kb on + strand, within DZA65_RS09235 at 1949.206 kb on + strand, within DZA65_RS09235 at 1949.206 kb on + strand, within DZA65_RS09235 at 1949.206 kb on + strand, within DZA65_RS09235 at 1949.206 kb on + strand, within DZA65_RS09235 at 1949.206 kb on + strand, within DZA65_RS09235 at 1949.206 kb on + strand, within DZA65_RS09235 at 1949.206 kb on + strand, within DZA65_RS09235 at 1949.207 kb on - strand, within DZA65_RS09235 at 1949.207 kb on - strand, within DZA65_RS09235 at 1949.207 kb on - strand, within DZA65_RS09235 at 1949.207 kb on - strand, within DZA65_RS09235 at 1949.207 kb on - strand, within DZA65_RS09235 at 1949.207 kb on - strand, within DZA65_RS09235 at 1949.554 kb on + strand at 1949.554 kb on + strand at 1949.555 kb on - strand at 1949.614 kb on + strand at 1949.614 kb on + strand at 1949.615 kb on - strand at 1949.749 kb on - strand, within DZA65_RS09240 at 1949.772 kb on + strand, within DZA65_RS09240 at 1949.914 kb on + strand at 1949.915 kb on - strand at 1949.926 kb on + strand at 1949.926 kb on + strand at 1949.926 kb on + strand at 1949.926 kb on + strand at 1949.927 kb on - strand at 1949.927 kb on - strand at 1949.929 kb on + strand at 1949.929 kb on + strand at 1949.929 kb on + strand at 1949.929 kb on + strand at 1949.929 kb on + strand at 1949.929 kb on + strand at 1949.930 kb on - strand at 1949.930 kb on - strand at 1949.930 kb on - strand at 1949.934 kb on + strand at 1949.934 kb on + strand at 1949.941 kb on + strand at 1949.958 kb on - strand at 1949.960 kb on + strand at 1949.960 kb on + strand at 1949.960 kb on + strand at 1949.960 kb on + strand at 1949.961 kb on - strand at 1950.139 kb on + strand, within DZA65_RS09245 at 1950.139 kb on + strand, within DZA65_RS09245 at 1950.140 kb on - strand, within DZA65_RS09245 at 1950.171 kb on + strand, within DZA65_RS09245 at 1950.172 kb on - strand, within DZA65_RS09245 at 1950.442 kb on + strand, within DZA65_RS09245 at 1950.443 kb on - strand, within DZA65_RS09245 at 1950.443 kb on - strand, within DZA65_RS09245 at 1950.583 kb on - strand, within DZA65_RS09245 at 1950.583 kb on - strand, within DZA65_RS09245 at 1950.583 kb on - strand, within DZA65_RS09245 at 1950.596 kb on + strand, within DZA65_RS09245 at 1950.615 kb on - strand, within DZA65_RS09245 at 1950.653 kb on - strand, within DZA65_RS09245 at 1950.660 kb on + strand, within DZA65_RS09245 at 1950.660 kb on + strand, within DZA65_RS09245 at 1950.660 kb on + strand, within DZA65_RS09245 at 1950.660 kb on + strand, within DZA65_RS09245 at 1950.660 kb on + strand, within DZA65_RS09245 at 1950.661 kb on - strand, within DZA65_RS09245 at 1950.661 kb on - strand, within DZA65_RS09245 at 1950.700 kb on + strand, within DZA65_RS09245 at 1950.700 kb on + strand, within DZA65_RS09245 at 1950.700 kb on + strand, within DZA65_RS09245 at 1950.701 kb on - strand, within DZA65_RS09245 at 1950.813 kb on + strand, within DZA65_RS09245 at 1950.813 kb on + strand, within DZA65_RS09245 at 1950.813 kb on + strand, within DZA65_RS09245 at 1950.843 kb on + strand, within DZA65_RS09245 at 1950.843 kb on + strand, within DZA65_RS09245 at 1950.843 kb on + strand, within DZA65_RS09245 at 1950.843 kb on + strand, within DZA65_RS09245 at 1950.843 kb on + strand, within DZA65_RS09245 at 1950.843 kb on + strand, within DZA65_RS09245 at 1950.844 kb on - strand, within DZA65_RS09245 at 1950.844 kb on - strand, within DZA65_RS09245 at 1950.844 kb on - strand, within DZA65_RS09245 at 1950.844 kb on - strand, within DZA65_RS09245 at 1950.844 kb on - strand, within DZA65_RS09245 at 1950.844 kb on - strand, within DZA65_RS09245 at 1950.844 kb on - strand, within DZA65_RS09245 at 1951.131 kb on + strand, within DZA65_RS09245 at 1951.134 kb on + strand, within DZA65_RS09245 at 1951.135 kb on - strand, within DZA65_RS09245 at 1951.301 kb on + strand at 1951.302 kb on - strand at 1951.388 kb on + strand at 1951.388 kb on + strand at 1951.388 kb on + strand at 1951.388 kb on + strand at 1951.388 kb on + strand at 1951.389 kb on - strand at 1951.389 kb on - strand at 1951.389 kb on - strand at 1951.389 kb on - strand at 1951.389 kb on - strand at 1951.393 kb on + strand at 1951.518 kb on + strand, within DZA65_RS09250 at 1951.519 kb on - strand, within DZA65_RS09250 at 1951.519 kb on - strand, within DZA65_RS09250 at 1951.603 kb on - strand, within DZA65_RS09250 at 1951.666 kb on + strand, within DZA65_RS09250 at 1951.666 kb on + strand, within DZA65_RS09250 at 1951.666 kb on + strand, within DZA65_RS09250 at 1951.667 kb on - strand, within DZA65_RS09250 at 1951.667 kb on - strand, within DZA65_RS09250 at 1951.667 kb on - strand, within DZA65_RS09250 at 1951.667 kb on - strand, within DZA65_RS09250 at 1951.667 kb on - strand, within DZA65_RS09250 at 1951.744 kb on + strand, within DZA65_RS09250 at 1951.744 kb on + strand, within DZA65_RS09250 at 1951.745 kb on - strand, within DZA65_RS09250 at 1951.817 kb on + strand, within DZA65_RS09250 at 1951.852 kb on - strand, within DZA65_RS09250 at 1951.852 kb on - strand, within DZA65_RS09250 at 1951.897 kb on + strand, within DZA65_RS09250 at 1951.898 kb on - strand, within DZA65_RS09250 at 1951.898 kb on - strand, within DZA65_RS09250 at 1951.898 kb on - strand at 1951.963 kb on + strand, within DZA65_RS09250 at 1951.964 kb on - strand, within DZA65_RS09250 at 1951.964 kb on - strand, within DZA65_RS09250 at 1951.964 kb on - strand, within DZA65_RS09250 at 1952.020 kb on + strand, within DZA65_RS09250 at 1952.020 kb on + strand, within DZA65_RS09250 at 1952.021 kb on - strand, within DZA65_RS09250 at 1952.021 kb on - strand, within DZA65_RS09250 at 1952.044 kb on + strand, within DZA65_RS09250 at 1952.116 kb on + strand, within DZA65_RS09250 at 1952.116 kb on + strand, within DZA65_RS09250 at 1952.117 kb on - strand, within DZA65_RS09250 at 1952.174 kb on + strand at 1952.217 kb on + strand at 1952.224 kb on + strand at 1952.224 kb on + strand at 1952.225 kb on - strand at 1952.225 kb on - strand at 1952.225 kb on - strand at 1952.225 kb on - strand at 1952.225 kb on - strand at 1952.225 kb on - strand at 1952.225 kb on - strand at 1952.242 kb on + strand at 1952.242 kb on + strand at 1952.243 kb on - strand at 1952.243 kb on - strand at 1952.254 kb on + strand at 1952.254 kb on + strand at 1952.254 kb on + strand at 1952.255 kb on - strand at 1952.255 kb on - strand at 1952.328 kb on + strand at 1952.328 kb on + strand at 1952.329 kb on - strand at 1952.329 kb on - strand at 1952.329 kb on - strand at 1952.351 kb on + strand at 1952.352 kb on - strand at 1952.352 kb on - strand at 1952.354 kb on + strand at 1952.354 kb on + strand at 1952.354 kb on + strand at 1952.355 kb on - strand at 1952.355 kb on - strand at 1952.355 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,949,086 + DZA65_RS09235 0.30 -0.7 1,949,086 + DZA65_RS09235 0.30 -0.3 1,949,087 - DZA65_RS09235 0.30 -0.5 1,949,127 - DZA65_RS09235 0.35 +0.4 1,949,162 + DZA65_RS09235 0.40 +0.1 1,949,162 + DZA65_RS09235 0.40 +1.5 1,949,162 + DZA65_RS09235 0.40 +0.6 1,949,162 + DZA65_RS09235 0.40 +0.7 1,949,169 + DZA65_RS09235 0.41 +0.4 1,949,204 + DZA65_RS09235 0.45 -0.6 1,949,204 + DZA65_RS09235 0.45 +0.3 1,949,205 - DZA65_RS09235 0.45 -1.9 1,949,205 - DZA65_RS09235 0.45 -1.3 1,949,205 - DZA65_RS09235 0.45 -1.2 1,949,205 - DZA65_RS09235 0.45 +0.0 1,949,206 + DZA65_RS09235 0.45 -0.5 1,949,206 + DZA65_RS09235 0.45 -0.7 1,949,206 + DZA65_RS09235 0.45 +0.8 1,949,206 + DZA65_RS09235 0.45 +0.9 1,949,206 + DZA65_RS09235 0.45 -0.0 1,949,206 + DZA65_RS09235 0.45 +0.5 1,949,206 + DZA65_RS09235 0.45 -0.8 1,949,206 + DZA65_RS09235 0.45 -0.2 1,949,207 - DZA65_RS09235 0.46 -1.3 1,949,207 - DZA65_RS09235 0.46 -2.2 1,949,207 - DZA65_RS09235 0.46 -1.0 1,949,207 - DZA65_RS09235 0.46 -0.2 1,949,207 - DZA65_RS09235 0.46 -1.7 1,949,207 - DZA65_RS09235 0.46 -1.9 1,949,554 + +0.3 1,949,554 + +0.5 1,949,555 - -0.8 1,949,614 + +0.1 1,949,614 + -0.9 1,949,615 - -0.0 1,949,749 - DZA65_RS09240 0.35 -1.7 1,949,772 + DZA65_RS09240 0.44 -2.8 1,949,914 + +0.8 1,949,915 - +0.5 1,949,926 + -0.3 1,949,926 + +0.1 1,949,926 + -0.9 1,949,926 + +0.5 1,949,927 - -0.5 1,949,927 - -0.5 1,949,929 + -0.0 1,949,929 + -0.5 1,949,929 + -0.5 1,949,929 + -0.9 1,949,929 + -0.1 1,949,929 + -0.3 1,949,930 - +0.5 1,949,930 - -0.9 1,949,930 - +0.5 1,949,934 + +0.2 1,949,934 + +0.0 1,949,941 + -0.5 1,949,958 - +0.1 1,949,960 + +0.6 1,949,960 + +0.5 1,949,960 + +0.1 1,949,960 + -0.8 1,949,961 - -1.2 1,950,139 + DZA65_RS09245 0.11 -0.0 1,950,139 + DZA65_RS09245 0.11 -0.1 1,950,140 - DZA65_RS09245 0.11 +0.6 1,950,171 + DZA65_RS09245 0.13 -0.3 1,950,172 - DZA65_RS09245 0.13 +0.5 1,950,442 + DZA65_RS09245 0.33 -0.8 1,950,443 - DZA65_RS09245 0.33 +0.4 1,950,443 - DZA65_RS09245 0.33 -0.2 1,950,583 - DZA65_RS09245 0.43 -0.6 1,950,583 - DZA65_RS09245 0.43 -0.9 1,950,583 - DZA65_RS09245 0.43 -0.5 1,950,596 + DZA65_RS09245 0.44 +0.5 1,950,615 - DZA65_RS09245 0.45 -0.6 1,950,653 - DZA65_RS09245 0.48 +0.6 1,950,660 + DZA65_RS09245 0.49 +0.1 1,950,660 + DZA65_RS09245 0.49 -0.8 1,950,660 + DZA65_RS09245 0.49 -0.6 1,950,660 + DZA65_RS09245 0.49 -0.6 1,950,660 + DZA65_RS09245 0.49 -0.0 1,950,661 - DZA65_RS09245 0.49 +0.5 1,950,661 - DZA65_RS09245 0.49 -0.1 1,950,700 + DZA65_RS09245 0.52 +0.3 1,950,700 + DZA65_RS09245 0.52 -0.5 1,950,700 + DZA65_RS09245 0.52 +0.1 1,950,701 - DZA65_RS09245 0.52 -0.1 1,950,813 + DZA65_RS09245 0.60 -0.1 1,950,813 + DZA65_RS09245 0.60 +1.0 1,950,813 + DZA65_RS09245 0.60 +0.1 1,950,843 + DZA65_RS09245 0.62 -0.3 1,950,843 + DZA65_RS09245 0.62 +0.1 1,950,843 + DZA65_RS09245 0.62 -0.2 1,950,843 + DZA65_RS09245 0.62 -2.0 1,950,843 + DZA65_RS09245 0.62 -1.2 1,950,843 + DZA65_RS09245 0.62 -0.5 1,950,844 - DZA65_RS09245 0.62 -0.3 1,950,844 - DZA65_RS09245 0.62 -0.8 1,950,844 - DZA65_RS09245 0.62 -0.4 1,950,844 - DZA65_RS09245 0.62 -1.8 1,950,844 - DZA65_RS09245 0.62 -0.5 1,950,844 - DZA65_RS09245 0.62 +0.4 1,950,844 - DZA65_RS09245 0.62 -0.4 1,951,131 + DZA65_RS09245 0.83 -1.0 1,951,134 + DZA65_RS09245 0.83 -1.3 1,951,135 - DZA65_RS09245 0.83 +0.4 1,951,301 + -0.2 1,951,302 - +0.5 1,951,388 + -0.7 1,951,388 + -0.1 1,951,388 + -0.4 1,951,388 + +0.0 1,951,388 + +0.8 1,951,389 - -0.1 1,951,389 - +1.4 1,951,389 - -0.9 1,951,389 - +0.3 1,951,389 - -0.1 1,951,393 + -0.7 1,951,518 + DZA65_RS09250 0.16 -0.5 1,951,519 - DZA65_RS09250 0.17 -0.5 1,951,519 - DZA65_RS09250 0.17 -0.7 1,951,603 - DZA65_RS09250 0.26 +0.5 1,951,666 + DZA65_RS09250 0.33 +0.1 1,951,666 + DZA65_RS09250 0.33 -1.3 1,951,666 + DZA65_RS09250 0.33 -0.5 1,951,667 - DZA65_RS09250 0.33 -1.1 1,951,667 - DZA65_RS09250 0.33 +0.1 1,951,667 - DZA65_RS09250 0.33 -0.7 1,951,667 - DZA65_RS09250 0.33 +0.5 1,951,667 - DZA65_RS09250 0.33 -1.1 1,951,744 + DZA65_RS09250 0.42 -0.5 1,951,744 + DZA65_RS09250 0.42 -0.7 1,951,745 - DZA65_RS09250 0.42 -0.5 1,951,817 + DZA65_RS09250 0.50 +0.0 1,951,852 - DZA65_RS09250 0.54 +0.2 1,951,852 - DZA65_RS09250 0.54 +0.4 1,951,897 + DZA65_RS09250 0.59 -0.1 1,951,898 - DZA65_RS09250 0.59 -2.6 1,951,898 - DZA65_RS09250 0.59 -0.6 1,951,898 - +2.1 1,951,963 + DZA65_RS09250 0.67 -0.9 1,951,964 - DZA65_RS09250 0.67 -1.7 1,951,964 - DZA65_RS09250 0.67 -0.2 1,951,964 - DZA65_RS09250 0.67 +0.8 1,952,020 + DZA65_RS09250 0.73 +0.7 1,952,020 + DZA65_RS09250 0.73 +0.7 1,952,021 - DZA65_RS09250 0.73 -0.1 1,952,021 - DZA65_RS09250 0.73 -0.2 1,952,044 + DZA65_RS09250 0.76 -0.7 1,952,116 + DZA65_RS09250 0.84 -0.2 1,952,116 + DZA65_RS09250 0.84 -0.6 1,952,117 - DZA65_RS09250 0.84 -1.2 1,952,174 + +0.1 1,952,217 + -2.3 1,952,224 + -1.2 1,952,224 + +0.4 1,952,225 - +0.4 1,952,225 - -0.1 1,952,225 - -0.9 1,952,225 - -0.5 1,952,225 - +0.5 1,952,225 - +0.1 1,952,225 - -0.8 1,952,242 + -0.4 1,952,242 + -0.8 1,952,243 - -1.7 1,952,243 - +0.2 1,952,254 + -0.6 1,952,254 + +0.9 1,952,254 + -0.6 1,952,255 - -0.9 1,952,255 - +0.1 1,952,328 + -1.0 1,952,328 + +0.5 1,952,329 - +1.1 1,952,329 - +0.1 1,952,329 - -1.0 1,952,351 + +1.7 1,952,352 - +0.0 1,952,352 - +0.2 1,952,354 + +1.1 1,952,354 + -0.1 1,952,354 + +1.5 1,952,355 - -0.3 1,952,355 - -1.5 1,952,355 - -0.1
Or see this region's nucleotide sequence