Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08925

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,879,363	-		DZA65_RS08915	0.63	-0.3
1,879,363	-		DZA65_RS08915	0.63	-1.5
1,879,415	-		DZA65_RS08915	0.68	+0.6
1,879,415	-		DZA65_RS08915	0.68	+1.0
1,879,415	-		DZA65_RS08915	0.68	-0.4
1,879,515	+		DZA65_RS08915	0.78	+0.1
1,879,541	-		DZA65_RS08915	0.80	+0.3
1,879,813	+				+0.4
1,879,813	+				-1.3
1,879,813	+				+0.4
1,879,813	+				-1.0
1,879,814	-				-1.4
1,879,814	-				-0.3
1,879,814	-				-0.8
1,879,814	-				-1.0
1,879,835	+				-1.1
1,879,835	+				+0.3
1,879,849	+				-2.0
1,879,849	+				-0.4
1,879,850	-				+1.7
1,879,871	-				+0.6
1,879,949	+		DZA65_RS08920	0.21	-0.4
1,879,949	+		DZA65_RS08920	0.21	-0.3
1,879,950	-		DZA65_RS08920	0.22	+0.0
1,879,950	-		DZA65_RS08920	0.22	+0.6
1,879,950	-		DZA65_RS08920	0.22	-0.1
1,879,964	+		DZA65_RS08920	0.25	+0.3
1,879,965	-		DZA65_RS08920	0.26	-1.4
1,879,965	-		DZA65_RS08920	0.26	-1.0
1,879,972	+		DZA65_RS08920	0.27	-1.1
1,879,973	-		DZA65_RS08920	0.28	-0.4
1,879,973	-		DZA65_RS08920	0.28	-0.4
1,879,973	-		DZA65_RS08920	0.28	-1.2
1,880,095	-		DZA65_RS08920	0.58	+1.8
1,880,119	-		DZA65_RS08920	0.64	+0.5
1,880,119	-		DZA65_RS08920	0.64	+0.2
1,880,161	+		DZA65_RS08920	0.75	+0.6
1,880,162	-		DZA65_RS08920	0.75	-0.8
1,880,181	+		DZA65_RS08920	0.80	+0.1
1,880,181	+		DZA65_RS08920	0.80	+1.1
1,880,181	+		DZA65_RS08920	0.80	-0.2
1,880,181	+		DZA65_RS08920	0.80	-2.2
1,880,181	+				-0.4
1,880,181	+		DZA65_RS08920	0.80	-0.0
1,880,182	-		DZA65_RS08920	0.80	-0.5
1,880,241	+				+0.7
1,880,241	+				+1.1
1,880,242	-				-0.7
1,880,242	-				-0.7
1,880,262	+				-0.4
1,880,263	-				+0.1
1,880,273	+				-2.2
1,880,274	-				-0.1
1,880,274	-				-1.0
1,880,279	+				-0.8
1,880,299	+				-1.9
1,880,300	-				-0.3
1,880,300	-				+0.8
1,880,331	-				+0.0
1,880,529	-				-1.4
1,880,608	+		DZA65_RS08925	0.34	-0.9
1,880,609	-		DZA65_RS08925	0.34	-0.7
1,880,609	-				+1.6
1,880,609	-		DZA65_RS08925	0.34	-0.2
1,880,609	-				+0.1
1,880,799	-		DZA65_RS08925	0.59	-1.2
1,880,844	+		DZA65_RS08925	0.65	-0.9
1,880,844	+		DZA65_RS08925	0.65	-3.2
1,880,844	+		DZA65_RS08925	0.65	+0.7
1,880,845	-		DZA65_RS08925	0.65	+0.8
1,881,003	+		DZA65_RS08925	0.86	-0.4
1,881,003	+		DZA65_RS08925	0.86	-0.6
1,881,003	+		DZA65_RS08925	0.86	-0.2
1,881,003	+		DZA65_RS08925	0.86	-0.8
1,881,003	+		DZA65_RS08925	0.86	+0.6
1,881,004	-		DZA65_RS08925	0.86	-1.7
1,881,068	+				+1.1
1,881,069	-				+0.9
1,881,070	+				+0.4
1,881,102	+				-1.2
1,881,102	+				-1.7
1,881,134	-				-0.3
1,881,197	-				-1.4
1,881,287	+		DZA65_RS08930	0.15	-1.2
1,881,347	-		DZA65_RS08930	0.19	-0.7
1,881,420	+		DZA65_RS08930	0.25	+0.1
1,881,420	+				+1.9
1,881,420	+		DZA65_RS08930	0.25	-0.1
1,881,420	+		DZA65_RS08930	0.25	-1.4
1,881,421	-		DZA65_RS08930	0.25	-0.9
1,881,421	-		DZA65_RS08930	0.25	-1.0
1,881,421	-		DZA65_RS08930	0.25	-0.1
1,881,567	+		DZA65_RS08930	0.37	-0.4
1,881,568	-		DZA65_RS08930	0.37	+0.0
1,881,708	-		DZA65_RS08930	0.49	-1.1
1,881,719	+		DZA65_RS08930	0.50	+0.0
1,881,719	+		DZA65_RS08930	0.50	-0.4
1,881,719	+		DZA65_RS08930	0.50	+0.6
1,881,720	-		DZA65_RS08930	0.50	+0.5
1,881,720	-				-0.4
1,881,720	-		DZA65_RS08930	0.50	+1.1
1,881,741	+		DZA65_RS08930	0.51	-0.9
1,881,741	+		DZA65_RS08930	0.51	-0.1
1,881,742	-		DZA65_RS08930	0.51	+0.1
1,881,742	-		DZA65_RS08930	0.51	-1.0
1,881,742	-		DZA65_RS08930	0.51	-1.1
1,881,758	+		DZA65_RS08930	0.53	-0.4
1,881,758	+		DZA65_RS08930	0.53	-0.4
1,881,758	+		DZA65_RS08930	0.53	+0.1