Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS08840 and DZA65_RS08845 are separated by 23 nucleotides DZA65_RS08845 and DZA65_RS08850 are separated by 138 nucleotides DZA65_RS08850 and DZA65_RS08855 are separated by 76 nucleotides DZA65_RS08855 and DZA65_RS08865 are separated by 408 nucleotides
DZA65_RS08840: DZA65_RS08840 - hypothetical protein, at 1,866,988 to 1,867,863
_RS08840
DZA65_RS08845: DZA65_RS08845 - hypothetical protein, at 1,867,887 to 1,868,291
_RS08845
DZA65_RS08850: DZA65_RS08850 - RHS repeat protein, at 1,868,430 to 1,869,023
_RS08850
DZA65_RS08855: DZA65_RS08855 - hypothetical protein, at 1,869,100 to 1,869,318
_RS08855
DZA65_RS08865: DZA65_RS08865 - hypothetical protein, at 1,869,727 to 1,870,653
_RS08865
Position (kb) 1868
1869
1870 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1867.430 kb on - strand, within DZA65_RS08840 at 1867.456 kb on - strand, within DZA65_RS08840 at 1867.458 kb on + strand, within DZA65_RS08840 at 1867.461 kb on - strand, within DZA65_RS08840 at 1867.461 kb on - strand, within DZA65_RS08840 at 1867.518 kb on + strand, within DZA65_RS08840 at 1867.518 kb on + strand, within DZA65_RS08840 at 1867.571 kb on - strand, within DZA65_RS08840 at 1867.572 kb on + strand, within DZA65_RS08840 at 1867.581 kb on + strand, within DZA65_RS08840 at 1867.586 kb on - strand, within DZA65_RS08840 at 1867.599 kb on + strand, within DZA65_RS08840 at 1867.611 kb on + strand, within DZA65_RS08840 at 1867.663 kb on - strand, within DZA65_RS08840 at 1867.705 kb on + strand, within DZA65_RS08840 at 1867.705 kb on + strand, within DZA65_RS08840 at 1867.707 kb on + strand, within DZA65_RS08840 at 1867.727 kb on - strand, within DZA65_RS08840 at 1867.748 kb on - strand, within DZA65_RS08840 at 1867.961 kb on + strand, within DZA65_RS08845 at 1868.034 kb on + strand, within DZA65_RS08845 at 1868.034 kb on + strand, within DZA65_RS08845 at 1868.047 kb on + strand, within DZA65_RS08845 at 1868.047 kb on + strand, within DZA65_RS08845 at 1868.048 kb on - strand, within DZA65_RS08845 at 1868.068 kb on - strand, within DZA65_RS08845 at 1868.091 kb on - strand, within DZA65_RS08845 at 1868.136 kb on + strand, within DZA65_RS08845 at 1868.276 kb on + strand at 1868.276 kb on + strand at 1868.277 kb on - strand at 1868.277 kb on - strand at 1868.424 kb on + strand at 1868.424 kb on + strand at 1868.424 kb on + strand at 1868.425 kb on - strand at 1868.430 kb on + strand at 1868.430 kb on + strand at 1868.431 kb on - strand at 1868.431 kb on - strand at 1868.431 kb on - strand at 1868.431 kb on - strand at 1868.431 kb on - strand at 1868.431 kb on - strand at 1868.431 kb on - strand at 1868.431 kb on - strand at 1868.431 kb on - strand at 1868.553 kb on + strand, within DZA65_RS08850 at 1868.554 kb on - strand, within DZA65_RS08850 at 1868.555 kb on + strand, within DZA65_RS08850 at 1868.555 kb on + strand, within DZA65_RS08850 at 1868.555 kb on + strand, within DZA65_RS08850 at 1868.555 kb on + strand, within DZA65_RS08850 at 1868.555 kb on + strand, within DZA65_RS08850 at 1868.555 kb on + strand, within DZA65_RS08850 at 1868.555 kb on + strand, within DZA65_RS08850 at 1868.555 kb on + strand, within DZA65_RS08850 at 1868.556 kb on - strand, within DZA65_RS08850 at 1868.556 kb on - strand, within DZA65_RS08850 at 1868.556 kb on - strand, within DZA65_RS08850 at 1868.556 kb on - strand, within DZA65_RS08850 at 1868.556 kb on - strand, within DZA65_RS08850 at 1868.569 kb on + strand, within DZA65_RS08850 at 1868.595 kb on + strand, within DZA65_RS08850 at 1868.622 kb on - strand, within DZA65_RS08850 at 1868.631 kb on + strand, within DZA65_RS08850 at 1868.631 kb on + strand, within DZA65_RS08850 at 1868.632 kb on - strand, within DZA65_RS08850 at 1868.685 kb on + strand, within DZA65_RS08850 at 1868.685 kb on + strand, within DZA65_RS08850 at 1868.686 kb on - strand, within DZA65_RS08850 at 1868.826 kb on + strand, within DZA65_RS08850 at 1868.916 kb on + strand, within DZA65_RS08850 at 1868.916 kb on + strand, within DZA65_RS08850 at 1868.916 kb on + strand, within DZA65_RS08850 at 1868.917 kb on - strand, within DZA65_RS08850 at 1868.917 kb on - strand, within DZA65_RS08850 at 1868.917 kb on - strand, within DZA65_RS08850 at 1868.917 kb on - strand, within DZA65_RS08850 at 1869.020 kb on + strand at 1869.020 kb on + strand at 1869.021 kb on - strand at 1869.021 kb on - strand at 1869.021 kb on - strand at 1869.021 kb on - strand at 1869.066 kb on + strand at 1869.197 kb on + strand, within DZA65_RS08855 at 1869.231 kb on - strand, within DZA65_RS08855 at 1869.316 kb on + strand at 1869.327 kb on + strand at 1869.348 kb on + strand at 1869.370 kb on + strand at 1869.389 kb on + strand at 1869.390 kb on - strand at 1869.390 kb on - strand at 1869.390 kb on - strand at 1869.393 kb on + strand at 1869.393 kb on + strand at 1869.394 kb on - strand at 1869.397 kb on + strand at 1869.403 kb on + strand at 1869.403 kb on + strand at 1869.404 kb on - strand at 1869.409 kb on - strand at 1869.427 kb on + strand at 1869.428 kb on - strand at 1869.429 kb on + strand at 1869.430 kb on - strand at 1869.431 kb on + strand at 1869.431 kb on + strand at 1869.431 kb on + strand at 1869.432 kb on - strand at 1869.432 kb on - strand at 1869.432 kb on - strand at 1869.432 kb on - strand at 1869.432 kb on - strand at 1869.501 kb on - strand at 1869.511 kb on - strand at 1869.511 kb on - strand at 1869.511 kb on - strand at 1869.511 kb on - strand at 1869.558 kb on + strand at 1869.573 kb on + strand at 1869.574 kb on - strand at 1869.585 kb on + strand at 1869.636 kb on + strand at 1869.636 kb on + strand at 1869.637 kb on - strand at 1869.637 kb on - strand at 1869.637 kb on - strand at 1869.656 kb on + strand at 1869.656 kb on + strand at 1869.656 kb on + strand at 1869.657 kb on - strand at 1869.657 kb on - strand at 1869.658 kb on + strand at 1869.658 kb on + strand at 1869.658 kb on + strand at 1869.659 kb on - strand at 1869.659 kb on - strand at 1869.659 kb on - strand at 1869.659 kb on - strand at 1869.673 kb on - strand at 1869.725 kb on + strand at 1869.726 kb on - strand at 1869.728 kb on + strand at 1869.729 kb on - strand at 1869.732 kb on + strand at 1869.732 kb on + strand at 1869.733 kb on - strand at 1869.733 kb on - strand at 1869.733 kb on - strand at 1869.779 kb on - strand at 1869.808 kb on - strand at 1869.865 kb on + strand, within DZA65_RS08865 at 1869.876 kb on + strand, within DZA65_RS08865 at 1869.886 kb on - strand, within DZA65_RS08865 at 1869.886 kb on - strand, within DZA65_RS08865 at 1869.886 kb on - strand, within DZA65_RS08865 at 1869.892 kb on - strand, within DZA65_RS08865
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,867,430 - DZA65_RS08840 0.50 -0.5 1,867,456 - DZA65_RS08840 0.53 +0.0 1,867,458 + DZA65_RS08840 0.54 -0.1 1,867,461 - DZA65_RS08840 0.54 -0.1 1,867,461 - DZA65_RS08840 0.54 +0.1 1,867,518 + DZA65_RS08840 0.61 +0.4 1,867,518 + DZA65_RS08840 0.61 -1.0 1,867,571 - DZA65_RS08840 0.67 -0.1 1,867,572 + DZA65_RS08840 0.67 -0.0 1,867,581 + DZA65_RS08840 0.68 -0.0 1,867,586 - DZA65_RS08840 0.68 -0.9 1,867,599 + DZA65_RS08840 0.70 -0.3 1,867,611 + DZA65_RS08840 0.71 -0.7 1,867,663 - DZA65_RS08840 0.77 -0.6 1,867,705 + DZA65_RS08840 0.82 -0.2 1,867,705 + DZA65_RS08840 0.82 -0.7 1,867,707 + DZA65_RS08840 0.82 -0.5 1,867,727 - DZA65_RS08840 0.84 -0.4 1,867,748 - DZA65_RS08840 0.87 -0.1 1,867,961 + DZA65_RS08845 0.18 -2.9 1,868,034 + DZA65_RS08845 0.36 +1.1 1,868,034 + DZA65_RS08845 0.36 -0.1 1,868,047 + DZA65_RS08845 0.40 -2.9 1,868,047 + DZA65_RS08845 0.40 -1.0 1,868,048 - DZA65_RS08845 0.40 -1.2 1,868,068 - DZA65_RS08845 0.45 +0.4 1,868,091 - DZA65_RS08845 0.50 +0.5 1,868,136 + DZA65_RS08845 0.61 -1.0 1,868,276 + -1.1 1,868,276 + -1.9 1,868,277 - -0.4 1,868,277 - +0.1 1,868,424 + -0.0 1,868,424 + +0.0 1,868,424 + +0.0 1,868,425 - +0.9 1,868,430 + -0.3 1,868,430 + +0.6 1,868,431 - +0.9 1,868,431 - -0.4 1,868,431 - -0.4 1,868,431 - +0.4 1,868,431 - -0.5 1,868,431 - -1.4 1,868,431 - -0.7 1,868,431 - -0.6 1,868,431 - -0.2 1,868,553 + DZA65_RS08850 0.21 +0.6 1,868,554 - DZA65_RS08850 0.21 -0.6 1,868,555 + DZA65_RS08850 0.21 -0.4 1,868,555 + DZA65_RS08850 0.21 -0.9 1,868,555 + DZA65_RS08850 0.21 +1.1 1,868,555 + DZA65_RS08850 0.21 -1.9 1,868,555 + DZA65_RS08850 0.21 -1.3 1,868,555 + DZA65_RS08850 0.21 -0.4 1,868,555 + DZA65_RS08850 0.21 +0.4 1,868,555 + DZA65_RS08850 0.21 -0.9 1,868,556 - DZA65_RS08850 0.21 -0.0 1,868,556 - DZA65_RS08850 0.21 -0.4 1,868,556 - DZA65_RS08850 0.21 +0.4 1,868,556 - DZA65_RS08850 0.21 -0.0 1,868,556 - DZA65_RS08850 0.21 -1.6 1,868,569 + DZA65_RS08850 0.23 +0.1 1,868,595 + DZA65_RS08850 0.28 +0.3 1,868,622 - DZA65_RS08850 0.32 -1.2 1,868,631 + DZA65_RS08850 0.34 +0.4 1,868,631 + DZA65_RS08850 0.34 -1.4 1,868,632 - DZA65_RS08850 0.34 -0.6 1,868,685 + DZA65_RS08850 0.43 +0.1 1,868,685 + DZA65_RS08850 0.43 -0.1 1,868,686 - DZA65_RS08850 0.43 -1.2 1,868,826 + DZA65_RS08850 0.67 -1.1 1,868,916 + DZA65_RS08850 0.82 -0.7 1,868,916 + DZA65_RS08850 0.82 -0.4 1,868,916 + DZA65_RS08850 0.82 -0.9 1,868,917 - DZA65_RS08850 0.82 +0.9 1,868,917 - DZA65_RS08850 0.82 -0.6 1,868,917 - DZA65_RS08850 0.82 -0.3 1,868,917 - DZA65_RS08850 0.82 +0.4 1,869,020 + -2.7 1,869,020 + +1.6 1,869,021 - +0.1 1,869,021 - -0.0 1,869,021 - +0.3 1,869,021 - -0.3 1,869,066 + -1.2 1,869,197 + DZA65_RS08855 0.44 -0.2 1,869,231 - DZA65_RS08855 0.60 +0.2 1,869,316 + -0.1 1,869,327 + +0.1 1,869,348 + -1.3 1,869,370 + -0.7 1,869,389 + +0.1 1,869,390 - +0.3 1,869,390 - -0.3 1,869,390 - -2.0 1,869,393 + -0.4 1,869,393 + +0.1 1,869,394 - -0.4 1,869,397 + +1.9 1,869,403 + -0.1 1,869,403 + +0.7 1,869,404 - -1.0 1,869,409 - -1.4 1,869,427 + +0.8 1,869,428 - +0.1 1,869,429 + +0.1 1,869,430 - -0.3 1,869,431 + -0.0 1,869,431 + -0.4 1,869,431 + -0.3 1,869,432 - -0.6 1,869,432 - +0.7 1,869,432 - -0.5 1,869,432 - +0.6 1,869,432 - -0.3 1,869,501 - +0.4 1,869,511 - -1.1 1,869,511 - -1.0 1,869,511 - -1.5 1,869,511 - -1.2 1,869,558 + +0.6 1,869,573 + +1.1 1,869,574 - -0.4 1,869,585 + -0.4 1,869,636 + -0.1 1,869,636 + -0.0 1,869,637 - -0.6 1,869,637 - +0.6 1,869,637 - +0.2 1,869,656 + -2.0 1,869,656 + -0.4 1,869,656 + +0.6 1,869,657 - -0.5 1,869,657 - -0.4 1,869,658 + -0.1 1,869,658 + +1.6 1,869,658 + -0.1 1,869,659 - +0.6 1,869,659 - -2.3 1,869,659 - +0.3 1,869,659 - +1.1 1,869,673 - -0.9 1,869,725 + +1.9 1,869,726 - +0.9 1,869,728 + +0.8 1,869,729 - +0.3 1,869,732 + -0.5 1,869,732 + -1.7 1,869,733 - +1.1 1,869,733 - +0.5 1,869,733 - +0.2 1,869,779 - +0.7 1,869,808 - +0.4 1,869,865 + DZA65_RS08865 0.15 -0.3 1,869,876 + DZA65_RS08865 0.16 -0.3 1,869,886 - DZA65_RS08865 0.17 -0.2 1,869,886 - DZA65_RS08865 0.17 +0.1 1,869,886 - DZA65_RS08865 0.17 -0.8 1,869,892 - DZA65_RS08865 0.18 -1.4
Or see this region's nucleotide sequence