Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS08835 and DZA65_RS08840 overlap by 1 nucleotides DZA65_RS08840 and DZA65_RS08845 are separated by 23 nucleotides DZA65_RS08845 and DZA65_RS08850 are separated by 138 nucleotides DZA65_RS08850 and DZA65_RS08855 are separated by 76 nucleotides
DZA65_RS08835: DZA65_RS08835 - type VI secretion system PAAR protein, at 1,866,464 to 1,866,988
_RS08835
DZA65_RS08840: DZA65_RS08840 - hypothetical protein, at 1,866,988 to 1,867,863
_RS08840
DZA65_RS08845: DZA65_RS08845 - hypothetical protein, at 1,867,887 to 1,868,291
_RS08845
DZA65_RS08850: DZA65_RS08850 - RHS repeat protein, at 1,868,430 to 1,869,023
_RS08850
DZA65_RS08855: DZA65_RS08855 - hypothetical protein, at 1,869,100 to 1,869,318
_RS08855
Position (kb) 1867
1868
1869 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1866.921 kb on + strand, within DZA65_RS08835 at 1866.921 kb on + strand, within DZA65_RS08835 at 1866.921 kb on + strand, within DZA65_RS08835 at 1866.922 kb on - strand, within DZA65_RS08835 at 1866.922 kb on - strand, within DZA65_RS08835 at 1866.930 kb on + strand, within DZA65_RS08835 at 1866.930 kb on + strand, within DZA65_RS08835 at 1866.956 kb on + strand at 1866.956 kb on + strand at 1866.956 kb on + strand at 1866.956 kb on + strand at 1866.956 kb on + strand at 1866.956 kb on + strand at 1866.957 kb on - strand at 1866.957 kb on - strand at 1866.957 kb on - strand at 1866.957 kb on - strand at 1866.957 kb on - strand at 1866.976 kb on - strand at 1866.976 kb on - strand at 1867.006 kb on - strand at 1867.089 kb on + strand, within DZA65_RS08840 at 1867.135 kb on - strand, within DZA65_RS08840 at 1867.185 kb on + strand, within DZA65_RS08840 at 1867.185 kb on + strand, within DZA65_RS08840 at 1867.230 kb on + strand, within DZA65_RS08840 at 1867.231 kb on - strand, within DZA65_RS08840 at 1867.231 kb on - strand, within DZA65_RS08840 at 1867.326 kb on - strand, within DZA65_RS08840 at 1867.354 kb on + strand, within DZA65_RS08840 at 1867.374 kb on + strand, within DZA65_RS08840 at 1867.386 kb on + strand, within DZA65_RS08840 at 1867.407 kb on - strand, within DZA65_RS08840 at 1867.430 kb on - strand, within DZA65_RS08840 at 1867.456 kb on - strand, within DZA65_RS08840 at 1867.458 kb on + strand, within DZA65_RS08840 at 1867.461 kb on - strand, within DZA65_RS08840 at 1867.461 kb on - strand, within DZA65_RS08840 at 1867.518 kb on + strand, within DZA65_RS08840 at 1867.518 kb on + strand, within DZA65_RS08840 at 1867.571 kb on - strand, within DZA65_RS08840 at 1867.572 kb on + strand, within DZA65_RS08840 at 1867.581 kb on + strand, within DZA65_RS08840 at 1867.586 kb on - strand, within DZA65_RS08840 at 1867.599 kb on + strand, within DZA65_RS08840 at 1867.611 kb on + strand, within DZA65_RS08840 at 1867.663 kb on - strand, within DZA65_RS08840 at 1867.705 kb on + strand, within DZA65_RS08840 at 1867.705 kb on + strand, within DZA65_RS08840 at 1867.707 kb on + strand, within DZA65_RS08840 at 1867.727 kb on - strand, within DZA65_RS08840 at 1867.748 kb on - strand, within DZA65_RS08840 at 1867.961 kb on + strand, within DZA65_RS08845 at 1868.034 kb on + strand, within DZA65_RS08845 at 1868.034 kb on + strand, within DZA65_RS08845 at 1868.047 kb on + strand, within DZA65_RS08845 at 1868.047 kb on + strand, within DZA65_RS08845 at 1868.048 kb on - strand, within DZA65_RS08845 at 1868.068 kb on - strand, within DZA65_RS08845 at 1868.091 kb on - strand, within DZA65_RS08845 at 1868.136 kb on + strand, within DZA65_RS08845 at 1868.276 kb on + strand at 1868.276 kb on + strand at 1868.277 kb on - strand at 1868.277 kb on - strand at 1868.424 kb on + strand at 1868.424 kb on + strand at 1868.424 kb on + strand at 1868.425 kb on - strand at 1868.430 kb on + strand at 1868.430 kb on + strand at 1868.431 kb on - strand at 1868.431 kb on - strand at 1868.431 kb on - strand at 1868.431 kb on - strand at 1868.431 kb on - strand at 1868.431 kb on - strand at 1868.431 kb on - strand at 1868.431 kb on - strand at 1868.431 kb on - strand at 1868.553 kb on + strand, within DZA65_RS08850 at 1868.554 kb on - strand, within DZA65_RS08850 at 1868.555 kb on + strand, within DZA65_RS08850 at 1868.555 kb on + strand, within DZA65_RS08850 at 1868.555 kb on + strand, within DZA65_RS08850 at 1868.555 kb on + strand, within DZA65_RS08850 at 1868.555 kb on + strand, within DZA65_RS08850 at 1868.555 kb on + strand, within DZA65_RS08850 at 1868.555 kb on + strand, within DZA65_RS08850 at 1868.555 kb on + strand, within DZA65_RS08850 at 1868.556 kb on - strand, within DZA65_RS08850 at 1868.556 kb on - strand, within DZA65_RS08850 at 1868.556 kb on - strand, within DZA65_RS08850 at 1868.556 kb on - strand, within DZA65_RS08850 at 1868.556 kb on - strand, within DZA65_RS08850 at 1868.569 kb on + strand, within DZA65_RS08850 at 1868.595 kb on + strand, within DZA65_RS08850 at 1868.622 kb on - strand, within DZA65_RS08850 at 1868.631 kb on + strand, within DZA65_RS08850 at 1868.631 kb on + strand, within DZA65_RS08850 at 1868.632 kb on - strand, within DZA65_RS08850 at 1868.685 kb on + strand, within DZA65_RS08850 at 1868.685 kb on + strand, within DZA65_RS08850 at 1868.686 kb on - strand, within DZA65_RS08850 at 1868.826 kb on + strand, within DZA65_RS08850 at 1868.916 kb on + strand, within DZA65_RS08850 at 1868.916 kb on + strand, within DZA65_RS08850 at 1868.916 kb on + strand, within DZA65_RS08850 at 1868.917 kb on - strand, within DZA65_RS08850 at 1868.917 kb on - strand, within DZA65_RS08850 at 1868.917 kb on - strand, within DZA65_RS08850 at 1868.917 kb on - strand, within DZA65_RS08850 at 1869.020 kb on + strand at 1869.020 kb on + strand at 1869.021 kb on - strand at 1869.021 kb on - strand at 1869.021 kb on - strand at 1869.021 kb on - strand at 1869.066 kb on + strand at 1869.197 kb on + strand, within DZA65_RS08855 at 1869.231 kb on - strand, within DZA65_RS08855
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,866,921 + DZA65_RS08835 0.87 +0.8 1,866,921 + DZA65_RS08835 0.87 -0.3 1,866,921 + DZA65_RS08835 0.87 -2.0 1,866,922 - DZA65_RS08835 0.87 +0.1 1,866,922 - DZA65_RS08835 0.87 -0.5 1,866,930 + DZA65_RS08835 0.89 -0.4 1,866,930 + DZA65_RS08835 0.89 +0.7 1,866,956 + -0.2 1,866,956 + +0.6 1,866,956 + +1.1 1,866,956 + +0.0 1,866,956 + -0.2 1,866,956 + +0.3 1,866,957 - +0.1 1,866,957 - +0.8 1,866,957 - -1.3 1,866,957 - +1.5 1,866,957 - -0.9 1,866,976 - -1.0 1,866,976 - -0.4 1,867,006 - -1.0 1,867,089 + DZA65_RS08840 0.12 -0.1 1,867,135 - DZA65_RS08840 0.17 -1.7 1,867,185 + DZA65_RS08840 0.22 -1.9 1,867,185 + DZA65_RS08840 0.22 -0.1 1,867,230 + DZA65_RS08840 0.28 +0.4 1,867,231 - DZA65_RS08840 0.28 +0.0 1,867,231 - DZA65_RS08840 0.28 +0.0 1,867,326 - DZA65_RS08840 0.39 -0.7 1,867,354 + DZA65_RS08840 0.42 -1.2 1,867,374 + DZA65_RS08840 0.44 -1.5 1,867,386 + DZA65_RS08840 0.45 -0.2 1,867,407 - DZA65_RS08840 0.48 -1.1 1,867,430 - DZA65_RS08840 0.50 -0.5 1,867,456 - DZA65_RS08840 0.53 +0.0 1,867,458 + DZA65_RS08840 0.54 -0.1 1,867,461 - DZA65_RS08840 0.54 -0.1 1,867,461 - DZA65_RS08840 0.54 +0.1 1,867,518 + DZA65_RS08840 0.61 +0.4 1,867,518 + DZA65_RS08840 0.61 -1.0 1,867,571 - DZA65_RS08840 0.67 -0.1 1,867,572 + DZA65_RS08840 0.67 -0.0 1,867,581 + DZA65_RS08840 0.68 -0.0 1,867,586 - DZA65_RS08840 0.68 -0.9 1,867,599 + DZA65_RS08840 0.70 -0.3 1,867,611 + DZA65_RS08840 0.71 -0.7 1,867,663 - DZA65_RS08840 0.77 -0.6 1,867,705 + DZA65_RS08840 0.82 -0.2 1,867,705 + DZA65_RS08840 0.82 -0.7 1,867,707 + DZA65_RS08840 0.82 -0.5 1,867,727 - DZA65_RS08840 0.84 -0.4 1,867,748 - DZA65_RS08840 0.87 -0.1 1,867,961 + DZA65_RS08845 0.18 -2.9 1,868,034 + DZA65_RS08845 0.36 +1.1 1,868,034 + DZA65_RS08845 0.36 -0.1 1,868,047 + DZA65_RS08845 0.40 -2.9 1,868,047 + DZA65_RS08845 0.40 -1.0 1,868,048 - DZA65_RS08845 0.40 -1.2 1,868,068 - DZA65_RS08845 0.45 +0.4 1,868,091 - DZA65_RS08845 0.50 +0.5 1,868,136 + DZA65_RS08845 0.61 -1.0 1,868,276 + -1.1 1,868,276 + -1.9 1,868,277 - -0.4 1,868,277 - +0.1 1,868,424 + -0.0 1,868,424 + +0.0 1,868,424 + +0.0 1,868,425 - +0.9 1,868,430 + -0.3 1,868,430 + +0.6 1,868,431 - +0.9 1,868,431 - -0.4 1,868,431 - -0.4 1,868,431 - +0.4 1,868,431 - -0.5 1,868,431 - -1.4 1,868,431 - -0.7 1,868,431 - -0.6 1,868,431 - -0.2 1,868,553 + DZA65_RS08850 0.21 +0.6 1,868,554 - DZA65_RS08850 0.21 -0.6 1,868,555 + DZA65_RS08850 0.21 -0.4 1,868,555 + DZA65_RS08850 0.21 -0.9 1,868,555 + DZA65_RS08850 0.21 +1.1 1,868,555 + DZA65_RS08850 0.21 -1.9 1,868,555 + DZA65_RS08850 0.21 -1.3 1,868,555 + DZA65_RS08850 0.21 -0.4 1,868,555 + DZA65_RS08850 0.21 +0.4 1,868,555 + DZA65_RS08850 0.21 -0.9 1,868,556 - DZA65_RS08850 0.21 -0.0 1,868,556 - DZA65_RS08850 0.21 -0.4 1,868,556 - DZA65_RS08850 0.21 +0.4 1,868,556 - DZA65_RS08850 0.21 -0.0 1,868,556 - DZA65_RS08850 0.21 -1.6 1,868,569 + DZA65_RS08850 0.23 +0.1 1,868,595 + DZA65_RS08850 0.28 +0.3 1,868,622 - DZA65_RS08850 0.32 -1.2 1,868,631 + DZA65_RS08850 0.34 +0.4 1,868,631 + DZA65_RS08850 0.34 -1.4 1,868,632 - DZA65_RS08850 0.34 -0.6 1,868,685 + DZA65_RS08850 0.43 +0.1 1,868,685 + DZA65_RS08850 0.43 -0.1 1,868,686 - DZA65_RS08850 0.43 -1.2 1,868,826 + DZA65_RS08850 0.67 -1.1 1,868,916 + DZA65_RS08850 0.82 -0.7 1,868,916 + DZA65_RS08850 0.82 -0.4 1,868,916 + DZA65_RS08850 0.82 -0.9 1,868,917 - DZA65_RS08850 0.82 +0.9 1,868,917 - DZA65_RS08850 0.82 -0.6 1,868,917 - DZA65_RS08850 0.82 -0.3 1,868,917 - DZA65_RS08850 0.82 +0.4 1,869,020 + -2.7 1,869,020 + +1.6 1,869,021 - +0.1 1,869,021 - -0.0 1,869,021 - +0.3 1,869,021 - -0.3 1,869,066 + -1.2 1,869,197 + DZA65_RS08855 0.44 -0.2 1,869,231 - DZA65_RS08855 0.60 +0.2
Or see this region's nucleotide sequence