Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08650

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,830,489	+		DZA65_RS08640	0.64	-0.0
1,830,490	-		DZA65_RS08640	0.64	+0.2
1,830,627	+		DZA65_RS08640	0.75	+0.5
1,830,628	-		DZA65_RS08640	0.75	-1.2
1,830,738	+		DZA65_RS08640	0.83	+0.5
1,830,864	+				-0.5
1,830,864	+				+0.3
1,830,864	+				-1.2
1,830,864	+				+0.2
1,830,864	+				+0.3
1,830,865	-				+1.2
1,830,865	-				-0.5
1,830,865	-				-0.4
1,830,865	-				-0.7
1,830,865	-				-1.5
1,830,865	-				-1.3
1,830,865	-				+0.0
1,830,865	-				+0.3
1,830,865	-				+0.6
1,830,888	+				+0.5
1,830,954	+				+0.3
1,830,954	+				-0.2
1,830,954	+				+0.3
1,830,954	+				-0.4
1,830,954	+				+0.4
1,830,955	-				+0.2
1,830,969	+				+0.2
1,830,969	+				-0.8
1,830,969	+				-0.8
1,830,970	-				-0.8
1,830,970	-				+0.8
1,830,970	-				+0.4
1,830,980	+				-1.2
1,830,981	-				+0.0
1,830,981	-				-1.1
1,830,983	+				+0.2
1,830,983	+				+0.9
1,830,984	-				+0.5
1,830,984	-				-0.4
1,831,092	+		DZA65_RS08645	0.39	-1.4
1,831,092	+		DZA65_RS08645	0.39	+0.7
1,831,092	+		DZA65_RS08645	0.39	-1.1
1,831,093	-		DZA65_RS08645	0.39	-0.1
1,831,093	-		DZA65_RS08645	0.39	-2.3
1,831,093	-		DZA65_RS08645	0.39	+0.6
1,831,120	-		DZA65_RS08645	0.51	+0.0
1,831,304	+				-1.7
1,831,304	+				+0.2
1,831,305	-				+0.3
1,831,306	+				-1.7
1,831,306	+				-0.4
1,831,306	+				-0.1
1,831,306	+				+0.6
1,831,307	-				+0.6
1,831,307	-				+0.3
1,831,307	-				-0.5
1,831,307	-				+0.0
1,831,307	-				-1.4
1,831,307	-				+2.0
1,831,309	+				-1.2
1,831,310	-				+0.4
1,831,310	-				-2.4
1,831,310	-				+0.2
1,831,338	-				+0.3
1,831,354	+				-1.0
1,831,354	+				+0.5
1,831,354	+				+1.2
1,831,354	+				-0.8
1,831,354	+				+1.2
1,831,355	-				-0.6
1,831,355	-				-0.4
1,831,364	+				-0.1
1,831,364	+				-0.1
1,831,365	-				-1.7
1,831,365	-				-0.5
1,831,365	-				-0.8
1,831,365	-				+0.0
1,831,376	-				+0.2
1,831,596	+		DZA65_RS08650	0.29	+0.7
1,831,596	+		DZA65_RS08650	0.29	+0.2
1,831,596	+		DZA65_RS08650	0.29	-0.6
1,831,647	-		DZA65_RS08650	0.35	-0.7
1,831,647	-		DZA65_RS08650	0.35	-0.0
1,831,689	+		DZA65_RS08650	0.41	-0.8
1,831,689	+		DZA65_RS08650	0.41	+0.8
1,831,689	+		DZA65_RS08650	0.41	-2.7
1,831,689	+		DZA65_RS08650	0.41	-1.0
1,831,690	-		DZA65_RS08650	0.41	-0.8
1,831,690	-		DZA65_RS08650	0.41	-0.1
1,831,690	-		DZA65_RS08650	0.41	-1.1
1,831,690	-		DZA65_RS08650	0.41	-0.6
1,831,690	-		DZA65_RS08650	0.41	+0.5
1,831,706	-		DZA65_RS08650	0.43	-0.0
1,831,730	+		DZA65_RS08650	0.46	+0.2
1,831,730	+		DZA65_RS08650	0.46	-0.3
1,831,730	+		DZA65_RS08650	0.46	+0.9
1,831,730	+		DZA65_RS08650	0.46	+0.2
1,831,730	+		DZA65_RS08650	0.46	-1.6
1,831,731	-		DZA65_RS08650	0.46	-2.0
1,831,731	-		DZA65_RS08650	0.46	+0.0
1,831,731	-		DZA65_RS08650	0.46	+0.2
1,831,731	-		DZA65_RS08650	0.46	-1.8
1,831,731	-		DZA65_RS08650	0.46	-0.9
1,831,731	-		DZA65_RS08650	0.46	-0.6
1,831,733	+		DZA65_RS08650	0.47	-0.3
1,831,733	+		DZA65_RS08650	0.47	-0.8
1,831,733	+		DZA65_RS08650	0.47	-0.7
1,831,734	-		DZA65_RS08650	0.47	+0.8
1,831,734	-		DZA65_RS08650	0.47	+0.3
1,831,734	-		DZA65_RS08650	0.47	+1.2
1,831,796	+		DZA65_RS08650	0.55	-0.5
1,831,828	+		DZA65_RS08650	0.59	-0.1
1,831,828	+		DZA65_RS08650	0.59	-0.5
1,831,828	+		DZA65_RS08650	0.59	-0.4
1,831,828	+		DZA65_RS08650	0.59	-2.0
1,831,828	+		DZA65_RS08650	0.59	+0.0
1,831,828	+		DZA65_RS08650	0.59	-1.7
1,831,829	-		DZA65_RS08650	0.59	-0.2
1,831,829	-		DZA65_RS08650	0.59	-0.8
1,831,829	-		DZA65_RS08650	0.59	-0.2
1,831,967	+				+1.7
1,831,967	+		DZA65_RS08650	0.77	+0.8
1,831,968	-		DZA65_RS08650	0.77	+0.9
1,831,968	-		DZA65_RS08650	0.77	+0.2
1,832,138	+				+0.6
1,832,138	+				+1.2
1,832,139	-				+1.0
1,832,139	-				-0.2
1,832,139	-				-0.7
1,832,139	-				-0.6
1,832,139	-				-0.7
1,832,139	-				-0.2
1,832,139	-				+1.2
1,832,148	+				-0.4
1,832,148	+				-0.2
1,832,205	+				-0.4
1,832,205	+				-0.5
1,832,206	-				-0.5
1,832,246	+				-0.3
1,832,246	+				-0.8
1,832,247	-				+0.6
1,832,247	-				-0.3
1,832,318	+				+0.3
1,832,318	+				-1.5
1,832,319	-				-0.1
1,832,327	-				+0.5
1,832,504	+		DZA65_RS08655	0.29	-1.2
1,832,603	-				-0.2
1,832,680	+		DZA65_RS08655	0.54	-0.3
1,832,680	+		DZA65_RS08655	0.54	-0.6
1,832,680	+		DZA65_RS08655	0.54	+3.7
1,832,680	+		DZA65_RS08655	0.54	-0.3
1,832,681	-		DZA65_RS08655	0.54	-1.7
1,832,681	-		DZA65_RS08655	0.54	-0.6
1,832,681	-		DZA65_RS08655	0.54	-0.5
1,832,681	-		DZA65_RS08655	0.54	+0.6
1,832,790	+		DZA65_RS08655	0.70	-1.4
1,832,808	+		DZA65_RS08655	0.72	+0.7
1,832,877	+		DZA65_RS08655	0.82	+0.2
1,832,877	+		DZA65_RS08655	0.82	-0.2
1,832,877	+		DZA65_RS08655	0.82	-0.3
1,832,878	-		DZA65_RS08655	0.82	+0.1
1,833,000	+				+0.4
1,833,001	-				-0.9