Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07240

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS07235 and DZA65_RS07240 are separated by 292 nucleotidesDZA65_RS07240 and DZA65_RS07245 overlap by 4 nucleotidesDZA65_RS07245 and DZA65_RS07250 overlap by 4 nucleotides DZA65_RS07235: DZA65_RS07235 - LuxR family transcriptional regulator, at 1,503,956 to 1,504,807 _RS07235 DZA65_RS07240: DZA65_RS07240 - ABC transporter permease, at 1,505,100 to 1,506,038 _RS07240 DZA65_RS07245: DZA65_RS07245 - ABC transporter permease, at 1,506,035 to 1,506,889 _RS07245 DZA65_RS07250: DZA65_RS07250 - ABC transporter ATP-binding protein, at 1,506,886 to 1,507,905 _RS07250 Position (kb) 1505 1506 1507Strain fitness (log2 ratio) -2 -1 0 1at 1504.147 kb on + strand, within DZA65_RS07235at 1504.148 kb on - strand, within DZA65_RS07235at 1504.148 kb on - strand, within DZA65_RS07235at 1504.148 kb on - strand, within DZA65_RS07235at 1504.222 kb on + strand, within DZA65_RS07235at 1504.223 kb on - strand, within DZA65_RS07235at 1504.336 kb on + strand, within DZA65_RS07235at 1504.336 kb on + strand, within DZA65_RS07235at 1504.336 kb on + strand, within DZA65_RS07235at 1504.337 kb on - strand, within DZA65_RS07235at 1504.337 kb on - strand, within DZA65_RS07235at 1504.337 kb on - strand, within DZA65_RS07235at 1504.339 kb on + strand, within DZA65_RS07235at 1504.339 kb on + strand, within DZA65_RS07235at 1504.339 kb on + strand, within DZA65_RS07235at 1504.339 kb on + strand, within DZA65_RS07235at 1504.339 kb on + strand, within DZA65_RS07235at 1504.339 kb on + strand, within DZA65_RS07235at 1504.340 kb on - strand, within DZA65_RS07235at 1504.340 kb on - strand, within DZA65_RS07235at 1504.340 kb on - strand, within DZA65_RS07235at 1504.340 kb on - strand, within DZA65_RS07235at 1504.340 kb on - strand, within DZA65_RS07235at 1504.340 kb on - strand, within DZA65_RS07235at 1504.351 kb on + strand, within DZA65_RS07235at 1504.351 kb on + strand, within DZA65_RS07235at 1504.351 kb on + strand, within DZA65_RS07235at 1504.351 kb on + strand, within DZA65_RS07235at 1504.351 kb on + strand, within DZA65_RS07235at 1504.351 kb on + strand, within DZA65_RS07235at 1504.351 kb on + strand, within DZA65_RS07235at 1504.351 kb on + strand, within DZA65_RS07235at 1504.351 kb on + strand, within DZA65_RS07235at 1504.351 kb on + strand, within DZA65_RS07235at 1504.352 kb on - strand, within DZA65_RS07235at 1504.352 kb on - strand, within DZA65_RS07235at 1504.352 kb on - strand, within DZA65_RS07235at 1504.352 kb on - strand, within DZA65_RS07235at 1504.352 kb on - strand, within DZA65_RS07235at 1504.353 kb on + strand, within DZA65_RS07235at 1504.353 kb on + strand, within DZA65_RS07235at 1504.353 kb on + strand, within DZA65_RS07235at 1504.353 kb on + strand, within DZA65_RS07235at 1504.353 kb on + strand, within DZA65_RS07235at 1504.353 kb on + strandat 1504.354 kb on - strand, within DZA65_RS07235at 1504.354 kb on - strand, within DZA65_RS07235at 1504.354 kb on - strand, within DZA65_RS07235at 1504.354 kb on - strand, within DZA65_RS07235at 1504.354 kb on - strand, within DZA65_RS07235at 1504.354 kb on - strand, within DZA65_RS07235at 1504.354 kb on - strand, within DZA65_RS07235at 1504.354 kb on - strand, within DZA65_RS07235at 1504.419 kb on + strand, within DZA65_RS07235at 1504.419 kb on + strand, within DZA65_RS07235at 1504.479 kb on + strand, within DZA65_RS07235at 1504.479 kb on + strand, within DZA65_RS07235at 1504.479 kb on + strand, within DZA65_RS07235at 1504.479 kb on + strand, within DZA65_RS07235at 1504.480 kb on - strand, within DZA65_RS07235at 1504.482 kb on + strand, within DZA65_RS07235at 1504.525 kb on + strand, within DZA65_RS07235at 1504.526 kb on - strand, within DZA65_RS07235at 1504.587 kb on + strand, within DZA65_RS07235at 1504.588 kb on - strand, within DZA65_RS07235at 1504.588 kb on - strand, within DZA65_RS07235at 1504.593 kb on + strand, within DZA65_RS07235at 1504.593 kb on + strand, within DZA65_RS07235at 1504.593 kb on + strand, within DZA65_RS07235at 1504.593 kb on + strand, within DZA65_RS07235at 1504.594 kb on - strand, within DZA65_RS07235at 1504.594 kb on - strand, within DZA65_RS07235at 1504.632 kb on + strand, within DZA65_RS07235at 1504.632 kb on + strand, within DZA65_RS07235at 1504.633 kb on - strand, within DZA65_RS07235at 1504.840 kb on - strandat 1504.851 kb on + strandat 1504.851 kb on + strandat 1504.898 kb on + strandat 1504.899 kb on - strandat 1504.899 kb on - strandat 1504.901 kb on + strandat 1504.901 kb on + strandat 1504.901 kb on + strandat 1504.901 kb on + strandat 1504.901 kb on + strandat 1504.902 kb on - strandat 1504.905 kb on + strandat 1504.905 kb on + strandat 1504.906 kb on - strandat 1504.906 kb on - strandat 1504.933 kb on + strandat 1504.934 kb on - strandat 1504.934 kb on - strandat 1504.963 kb on - strandat 1504.965 kb on + strandat 1504.966 kb on - strandat 1504.966 kb on - strandat 1504.966 kb on - strandat 1504.966 kb on - strandat 1505.096 kb on + strandat 1505.096 kb on + strandat 1505.096 kb on + strandat 1505.096 kb on + strandat 1505.096 kb on + strandat 1505.096 kb on + strandat 1505.097 kb on - strandat 1505.097 kb on - strandat 1505.097 kb on - strandat 1505.119 kb on + strandat 1505.298 kb on + strand, within DZA65_RS07240at 1505.298 kb on + strand, within DZA65_RS07240at 1505.298 kb on + strand, within DZA65_RS07240at 1505.299 kb on - strand, within DZA65_RS07240at 1505.299 kb on - strand, within DZA65_RS07240at 1505.299 kb on - strand, within DZA65_RS07240at 1505.345 kb on + strand, within DZA65_RS07240at 1505.345 kb on + strand, within DZA65_RS07240at 1505.345 kb on + strand, within DZA65_RS07240at 1505.352 kb on + strand, within DZA65_RS07240at 1505.353 kb on - strand, within DZA65_RS07240at 1505.353 kb on - strand, within DZA65_RS07240at 1505.360 kb on - strand, within DZA65_RS07240at 1505.360 kb on - strand, within DZA65_RS07240at 1505.360 kb on - strand, within DZA65_RS07240at 1505.360 kb on - strand, within DZA65_RS07240at 1505.360 kb on - strand, within DZA65_RS07240at 1505.498 kb on + strand, within DZA65_RS07240at 1505.499 kb on - strandat 1505.499 kb on - strand, within DZA65_RS07240at 1505.730 kb on + strand, within DZA65_RS07240at 1505.730 kb on + strand, within DZA65_RS07240at 1505.730 kb on + strand, within DZA65_RS07240at 1505.730 kb on + strand, within DZA65_RS07240at 1505.730 kb on + strand, within DZA65_RS07240at 1505.731 kb on - strand, within DZA65_RS07240at 1505.731 kb on - strand, within DZA65_RS07240at 1505.731 kb on - strand, within DZA65_RS07240at 1505.731 kb on - strand, within DZA65_RS07240at 1505.731 kb on - strand, within DZA65_RS07240at 1505.731 kb on - strand, within DZA65_RS07240at 1505.731 kb on - strand, within DZA65_RS07240at 1505.816 kb on + strand, within DZA65_RS07240at 1505.817 kb on - strand, within DZA65_RS07240at 1505.931 kb on + strand, within DZA65_RS07240at 1505.931 kb on + strand, within DZA65_RS07240at 1505.932 kb on - strand, within DZA65_RS07240at 1506.034 kb on + strandat 1506.035 kb on - strandat 1506.244 kb on + strand, within DZA65_RS07245at 1506.244 kb on + strand, within DZA65_RS07245at 1506.245 kb on - strand, within DZA65_RS07245at 1506.248 kb on + strand, within DZA65_RS07245at 1506.248 kb on + strand, within DZA65_RS07245at 1506.248 kb on + strand, within DZA65_RS07245at 1506.249 kb on - strand, within DZA65_RS07245at 1506.249 kb on - strand, within DZA65_RS07245at 1506.249 kb on - strand, within DZA65_RS07245at 1506.273 kb on + strand, within DZA65_RS07245at 1506.274 kb on - strand, within DZA65_RS07245at 1506.365 kb on + strand, within DZA65_RS07245at 1506.448 kb on + strand, within DZA65_RS07245at 1506.448 kb on + strand, within DZA65_RS07245at 1506.448 kb on + strand, within DZA65_RS07245at 1506.448 kb on + strand, within DZA65_RS07245at 1506.449 kb on - strand, within DZA65_RS07245at 1506.449 kb on - strand, within DZA65_RS07245at 1506.452 kb on - strand, within DZA65_RS07245at 1506.452 kb on - strand, within DZA65_RS07245at 1506.485 kb on + strand, within DZA65_RS07245at 1506.485 kb on + strand, within DZA65_RS07245at 1506.485 kb on + strand, within DZA65_RS07245at 1506.486 kb on - strand, within DZA65_RS07245at 1506.486 kb on - strand, within DZA65_RS07245at 1506.486 kb on - strand, within DZA65_RS07245at 1506.518 kb on + strand, within DZA65_RS07245at 1506.566 kb on + strand, within DZA65_RS07245at 1506.566 kb on + strand, within DZA65_RS07245at 1506.567 kb on - strand, within DZA65_RS07245at 1506.567 kb on - strand, within DZA65_RS07245at 1506.567 kb on - strand, within DZA65_RS07245at 1506.567 kb on - strand, within DZA65_RS07245at 1506.567 kb on - strand, within DZA65_RS07245at 1506.707 kb on + strand, within DZA65_RS07245at 1506.707 kb on + strand, within DZA65_RS07245at 1506.708 kb on - strand, within DZA65_RS07245at 1506.708 kb on - strand, within DZA65_RS07245at 1506.751 kb on - strand, within DZA65_RS07245at 1506.779 kb on - strand, within DZA65_RS07245at 1506.822 kb on + strandat 1506.822 kb on + strandat 1506.823 kb on - strandat 1506.823 kb on - strandat 1506.894 kb on - strandat 1506.902 kb on + strandat 1506.903 kb on - strandat 1506.920 kb on + strandat 1506.920 kb on + strandat 1506.920 kb on + strandat 1506.920 kb on + strandat 1506.920 kb on + strandat 1506.921 kb on - strandat 1506.921 kb on - strandat 1506.938 kb on + strandat 1506.939 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,504,147 + DZA65_RS07235 0.22 -0.6
1,504,148 - DZA65_RS07235 0.23 +0.0
1,504,148 - DZA65_RS07235 0.23 -1.2
1,504,148 - DZA65_RS07235 0.23 -0.8
1,504,222 + DZA65_RS07235 0.31 -0.9
1,504,223 - DZA65_RS07235 0.31 +1.2
1,504,336 + DZA65_RS07235 0.45 +0.2
1,504,336 + DZA65_RS07235 0.45 +0.2
1,504,336 + DZA65_RS07235 0.45 -0.6
1,504,337 - DZA65_RS07235 0.45 -2.4
1,504,337 - DZA65_RS07235 0.45 +0.6
1,504,337 - DZA65_RS07235 0.45 +0.4
1,504,339 + DZA65_RS07235 0.45 -0.4
1,504,339 + DZA65_RS07235 0.45 -0.8
1,504,339 + DZA65_RS07235 0.45 +1.7
1,504,339 + DZA65_RS07235 0.45 -1.3
1,504,339 + DZA65_RS07235 0.45 +0.1
1,504,339 + DZA65_RS07235 0.45 +1.2
1,504,340 - DZA65_RS07235 0.45 -0.4
1,504,340 - DZA65_RS07235 0.45 -0.3
1,504,340 - DZA65_RS07235 0.45 +0.7
1,504,340 - DZA65_RS07235 0.45 +1.0
1,504,340 - DZA65_RS07235 0.45 -1.6
1,504,340 - DZA65_RS07235 0.45 +0.0
1,504,351 + DZA65_RS07235 0.46 -0.4
1,504,351 + DZA65_RS07235 0.46 -0.9
1,504,351 + DZA65_RS07235 0.46 +1.4
1,504,351 + DZA65_RS07235 0.46 -0.6
1,504,351 + DZA65_RS07235 0.46 -0.6
1,504,351 + DZA65_RS07235 0.46 -1.9
1,504,351 + DZA65_RS07235 0.46 -0.2
1,504,351 + DZA65_RS07235 0.46 -0.5
1,504,351 + DZA65_RS07235 0.46 -1.6
1,504,351 + DZA65_RS07235 0.46 -0.8
1,504,352 - DZA65_RS07235 0.46 -0.4
1,504,352 - DZA65_RS07235 0.46 +1.5
1,504,352 - DZA65_RS07235 0.46 -0.2
1,504,352 - DZA65_RS07235 0.46 -0.2
1,504,352 - DZA65_RS07235 0.46 +0.3
1,504,353 + DZA65_RS07235 0.47 +0.2
1,504,353 + DZA65_RS07235 0.47 -1.2
1,504,353 + DZA65_RS07235 0.47 +0.5
1,504,353 + DZA65_RS07235 0.47 +0.2
1,504,353 + DZA65_RS07235 0.47 -0.2
1,504,353 + +0.2
1,504,354 - DZA65_RS07235 0.47 +1.0
1,504,354 - DZA65_RS07235 0.47 +0.6
1,504,354 - DZA65_RS07235 0.47 +0.2
1,504,354 - DZA65_RS07235 0.47 -1.8
1,504,354 - DZA65_RS07235 0.47 +0.2
1,504,354 - DZA65_RS07235 0.47 -0.6
1,504,354 - DZA65_RS07235 0.47 -1.6
1,504,354 - DZA65_RS07235 0.47 -0.2
1,504,419 + DZA65_RS07235 0.54 -0.8
1,504,419 + DZA65_RS07235 0.54 +0.6
1,504,479 + DZA65_RS07235 0.61 -1.0
1,504,479 + DZA65_RS07235 0.61 +0.6
1,504,479 + DZA65_RS07235 0.61 -0.2
1,504,479 + DZA65_RS07235 0.61 +0.2
1,504,480 - DZA65_RS07235 0.62 -0.2
1,504,482 + DZA65_RS07235 0.62 -1.1
1,504,525 + DZA65_RS07235 0.67 +0.0
1,504,526 - DZA65_RS07235 0.67 -0.5
1,504,587 + DZA65_RS07235 0.74 -0.0
1,504,588 - DZA65_RS07235 0.74 +0.4
1,504,588 - DZA65_RS07235 0.74 -1.5
1,504,593 + DZA65_RS07235 0.75 +0.6
1,504,593 + DZA65_RS07235 0.75 -0.6
1,504,593 + DZA65_RS07235 0.75 +0.2
1,504,593 + DZA65_RS07235 0.75 -0.6
1,504,594 - DZA65_RS07235 0.75 -0.3
1,504,594 - DZA65_RS07235 0.75 +0.5
1,504,632 + DZA65_RS07235 0.79 -0.1
1,504,632 + DZA65_RS07235 0.79 +0.1
1,504,633 - DZA65_RS07235 0.79 -0.0
1,504,840 - -0.0
1,504,851 + +0.1
1,504,851 + +0.6
1,504,898 + -0.6
1,504,899 - -0.1
1,504,899 - +0.6
1,504,901 + -1.8
1,504,901 + -1.2
1,504,901 + +0.4
1,504,901 + -0.1
1,504,901 + +0.1
1,504,902 - -1.1
1,504,905 + -0.7
1,504,905 + -0.4
1,504,906 - +1.4
1,504,906 - +0.1
1,504,933 + -0.2
1,504,934 - -0.2
1,504,934 - -0.5
1,504,963 - +0.2
1,504,965 + -1.7
1,504,966 - -0.1
1,504,966 - -1.8
1,504,966 - +0.6
1,504,966 - -0.6
1,505,096 + -1.5
1,505,096 + +0.3
1,505,096 + +0.1
1,505,096 + -0.4
1,505,096 + -0.1
1,505,096 + +0.6
1,505,097 - +1.1
1,505,097 - -0.5
1,505,097 - -0.2
1,505,119 + +0.0
1,505,298 + DZA65_RS07240 0.21 -2.4
1,505,298 + DZA65_RS07240 0.21 -0.4
1,505,298 + DZA65_RS07240 0.21 -0.9
1,505,299 - DZA65_RS07240 0.21 +0.9
1,505,299 - DZA65_RS07240 0.21 +0.5
1,505,299 - DZA65_RS07240 0.21 -1.6
1,505,345 + DZA65_RS07240 0.26 -0.4
1,505,345 + DZA65_RS07240 0.26 -1.5
1,505,345 + DZA65_RS07240 0.26 -0.6
1,505,352 + DZA65_RS07240 0.27 +0.1
1,505,353 - DZA65_RS07240 0.27 -0.5
1,505,353 - DZA65_RS07240 0.27 +0.1
1,505,360 - DZA65_RS07240 0.28 -0.6
1,505,360 - DZA65_RS07240 0.28 -0.6
1,505,360 - DZA65_RS07240 0.28 +1.5
1,505,360 - DZA65_RS07240 0.28 -0.2
1,505,360 - DZA65_RS07240 0.28 -0.6
1,505,498 + DZA65_RS07240 0.42 -0.8
1,505,499 - -0.4
1,505,499 - DZA65_RS07240 0.42 +0.9
1,505,730 + DZA65_RS07240 0.67 -0.4
1,505,730 + DZA65_RS07240 0.67 -1.3
1,505,730 + DZA65_RS07240 0.67 -0.2
1,505,730 + DZA65_RS07240 0.67 -0.1
1,505,730 + DZA65_RS07240 0.67 +0.3
1,505,731 - DZA65_RS07240 0.67 -0.8
1,505,731 - DZA65_RS07240 0.67 +0.1
1,505,731 - DZA65_RS07240 0.67 -0.2
1,505,731 - DZA65_RS07240 0.67 -0.0
1,505,731 - DZA65_RS07240 0.67 -0.1
1,505,731 - DZA65_RS07240 0.67 +0.8
1,505,731 - DZA65_RS07240 0.67 -0.8
1,505,816 + DZA65_RS07240 0.76 -0.7
1,505,817 - DZA65_RS07240 0.76 -1.4
1,505,931 + DZA65_RS07240 0.88 -0.4
1,505,931 + DZA65_RS07240 0.88 -0.0
1,505,932 - DZA65_RS07240 0.89 -0.1
1,506,034 + -0.3
1,506,035 - -1.8
1,506,244 + DZA65_RS07245 0.24 +0.0
1,506,244 + DZA65_RS07245 0.24 +0.0
1,506,245 - DZA65_RS07245 0.25 -1.9
1,506,248 + DZA65_RS07245 0.25 -0.6
1,506,248 + DZA65_RS07245 0.25 -0.6
1,506,248 + DZA65_RS07245 0.25 +1.2
1,506,249 - DZA65_RS07245 0.25 -0.4
1,506,249 - DZA65_RS07245 0.25 -1.1
1,506,249 - DZA65_RS07245 0.25 -0.0
1,506,273 + DZA65_RS07245 0.28 +0.0
1,506,274 - DZA65_RS07245 0.28 +1.2
1,506,365 + DZA65_RS07245 0.39 -1.0
1,506,448 + DZA65_RS07245 0.48 -0.2
1,506,448 + DZA65_RS07245 0.48 +0.3
1,506,448 + DZA65_RS07245 0.48 -0.1
1,506,448 + DZA65_RS07245 0.48 +0.2
1,506,449 - DZA65_RS07245 0.48 -0.2
1,506,449 - DZA65_RS07245 0.48 +0.8
1,506,452 - DZA65_RS07245 0.49 -0.4
1,506,452 - DZA65_RS07245 0.49 -0.8
1,506,485 + DZA65_RS07245 0.53 +0.2
1,506,485 + DZA65_RS07245 0.53 -0.3
1,506,485 + DZA65_RS07245 0.53 +0.6
1,506,486 - DZA65_RS07245 0.53 +0.8
1,506,486 - DZA65_RS07245 0.53 -1.2
1,506,486 - DZA65_RS07245 0.53 -0.2
1,506,518 + DZA65_RS07245 0.56 +0.0
1,506,566 + DZA65_RS07245 0.62 +0.7
1,506,566 + DZA65_RS07245 0.62 -1.6
1,506,567 - DZA65_RS07245 0.62 -1.8
1,506,567 - DZA65_RS07245 0.62 -0.9
1,506,567 - DZA65_RS07245 0.62 +0.2
1,506,567 - DZA65_RS07245 0.62 +0.8
1,506,567 - DZA65_RS07245 0.62 -0.6
1,506,707 + DZA65_RS07245 0.79 +0.7
1,506,707 + DZA65_RS07245 0.79 +1.0
1,506,708 - DZA65_RS07245 0.79 -2.1
1,506,708 - DZA65_RS07245 0.79 -0.4
1,506,751 - DZA65_RS07245 0.84 -0.8
1,506,779 - DZA65_RS07245 0.87 -0.2
1,506,822 + +0.8
1,506,822 + -0.4
1,506,823 - -0.6
1,506,823 - -0.7
1,506,894 - +0.4
1,506,902 + -1.6
1,506,903 - +0.8
1,506,920 + +0.0
1,506,920 + +1.2
1,506,920 + -0.9
1,506,920 + -0.6
1,506,920 + +1.1
1,506,921 - +0.2
1,506,921 - -0.6
1,506,938 + -0.1
1,506,939 - -0.3

Or see this region's nucleotide sequence