Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS06470 and DZA65_RS06475 are separated by 271 nucleotides DZA65_RS06475 and DZA65_RS06480 are separated by 19 nucleotides DZA65_RS06480 and DZA65_RS06485 are separated by 324 nucleotides
DZA65_RS06470: DZA65_RS06470 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 1,347,417 to 1,348,130
_RS06470
DZA65_RS06475: DZA65_RS06475 - DUF441 domain-containing protein, at 1,348,402 to 1,348,854
_RS06475
DZA65_RS06480: DZA65_RS06480 - tRNA(Met) cytidine acetyltransferase, at 1,348,874 to 1,350,895
_RS06480
DZA65_RS06485: DZA65_RS06485 - esterase, at 1,351,220 to 1,351,906
_RS06485
Position (kb) 1348
1349
1350
1351 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1347.882 kb on + strand, within DZA65_RS06470 at 1347.882 kb on + strand, within DZA65_RS06470 at 1347.882 kb on + strand, within DZA65_RS06470 at 1347.882 kb on + strand, within DZA65_RS06470 at 1347.882 kb on + strand, within DZA65_RS06470 at 1347.883 kb on - strand, within DZA65_RS06470 at 1347.883 kb on - strand, within DZA65_RS06470 at 1347.883 kb on - strand, within DZA65_RS06470 at 1347.883 kb on - strand, within DZA65_RS06470 at 1347.883 kb on - strand, within DZA65_RS06470 at 1347.883 kb on - strand, within DZA65_RS06470 at 1347.883 kb on - strand, within DZA65_RS06470 at 1348.089 kb on + strand at 1348.090 kb on - strand at 1348.090 kb on - strand at 1348.129 kb on - strand at 1348.144 kb on + strand at 1348.199 kb on + strand at 1348.199 kb on + strand at 1348.200 kb on - strand at 1348.200 kb on - strand at 1348.202 kb on + strand at 1348.202 kb on + strand at 1348.202 kb on + strand at 1348.203 kb on - strand at 1348.203 kb on - strand at 1348.219 kb on + strand at 1348.220 kb on - strand at 1348.233 kb on + strand at 1348.234 kb on - strand at 1348.236 kb on + strand at 1348.236 kb on + strand at 1348.236 kb on + strand at 1348.236 kb on + strand at 1348.236 kb on + strand at 1348.236 kb on + strand at 1348.236 kb on + strand at 1348.236 kb on + strand at 1348.236 kb on + strand at 1348.236 kb on + strand at 1348.237 kb on - strand at 1348.237 kb on - strand at 1348.237 kb on - strand at 1348.237 kb on - strand at 1348.240 kb on + strand at 1348.240 kb on + strand at 1348.240 kb on + strand at 1348.240 kb on + strand at 1348.240 kb on + strand at 1348.240 kb on + strand at 1348.240 kb on + strand at 1348.240 kb on + strand at 1348.240 kb on + strand at 1348.241 kb on - strand at 1348.241 kb on - strand at 1348.241 kb on - strand at 1348.241 kb on - strand at 1348.241 kb on - strand at 1348.241 kb on - strand at 1348.241 kb on - strand at 1348.241 kb on - strand at 1348.241 kb on - strand at 1348.241 kb on - strand at 1348.279 kb on - strand at 1348.279 kb on - strand at 1348.324 kb on + strand at 1348.324 kb on + strand at 1348.325 kb on - strand at 1348.333 kb on + strand at 1348.334 kb on - strand at 1348.334 kb on - strand at 1348.356 kb on + strand at 1348.356 kb on + strand at 1348.357 kb on - strand at 1348.357 kb on - strand at 1348.357 kb on - strand at 1348.396 kb on + strand at 1348.397 kb on - strand at 1348.428 kb on + strand at 1348.429 kb on - strand at 1348.433 kb on + strand at 1348.480 kb on - strand, within DZA65_RS06475 at 1348.489 kb on - strand, within DZA65_RS06475 at 1348.531 kb on + strand, within DZA65_RS06475 at 1348.532 kb on - strand, within DZA65_RS06475 at 1348.532 kb on - strand, within DZA65_RS06475 at 1348.532 kb on - strand, within DZA65_RS06475 at 1348.532 kb on - strand, within DZA65_RS06475 at 1348.553 kb on - strand, within DZA65_RS06475 at 1348.692 kb on - strand, within DZA65_RS06475 at 1348.901 kb on + strand at 1348.929 kb on + strand at 1348.929 kb on + strand at 1348.929 kb on + strand at 1348.935 kb on + strand at 1348.935 kb on + strand at 1348.935 kb on + strand at 1349.061 kb on + strand at 1349.062 kb on - strand at 1349.062 kb on - strand at 1349.283 kb on + strand, within DZA65_RS06480 at 1349.283 kb on + strand, within DZA65_RS06480 at 1349.283 kb on + strand, within DZA65_RS06480 at 1349.283 kb on + strand, within DZA65_RS06480 at 1349.283 kb on + strand, within DZA65_RS06480 at 1349.284 kb on - strand, within DZA65_RS06480 at 1349.284 kb on - strand, within DZA65_RS06480 at 1349.284 kb on - strand, within DZA65_RS06480 at 1349.284 kb on - strand, within DZA65_RS06480 at 1349.284 kb on - strand, within DZA65_RS06480 at 1349.347 kb on - strand, within DZA65_RS06480 at 1349.349 kb on + strand, within DZA65_RS06480 at 1349.350 kb on - strand, within DZA65_RS06480 at 1349.350 kb on - strand, within DZA65_RS06480 at 1349.350 kb on - strand, within DZA65_RS06480 at 1349.350 kb on - strand, within DZA65_RS06480 at 1349.416 kb on + strand, within DZA65_RS06480 at 1349.417 kb on - strand, within DZA65_RS06480 at 1349.417 kb on - strand, within DZA65_RS06480 at 1349.709 kb on + strand, within DZA65_RS06480 at 1349.710 kb on - strand, within DZA65_RS06480 at 1349.749 kb on - strand, within DZA65_RS06480 at 1349.819 kb on - strand, within DZA65_RS06480 at 1349.819 kb on - strand, within DZA65_RS06480 at 1349.819 kb on - strand, within DZA65_RS06480 at 1349.819 kb on - strand, within DZA65_RS06480 at 1349.869 kb on + strand, within DZA65_RS06480 at 1349.869 kb on + strand, within DZA65_RS06480 at 1349.999 kb on + strand, within DZA65_RS06480 at 1350.000 kb on - strand, within DZA65_RS06480 at 1350.000 kb on - strand, within DZA65_RS06480 at 1350.077 kb on - strand, within DZA65_RS06480 at 1350.115 kb on + strand, within DZA65_RS06480 at 1350.116 kb on - strand, within DZA65_RS06480 at 1350.448 kb on + strand, within DZA65_RS06480 at 1350.470 kb on + strand, within DZA65_RS06480 at 1350.470 kb on + strand, within DZA65_RS06480 at 1350.471 kb on - strand, within DZA65_RS06480 at 1350.471 kb on - strand, within DZA65_RS06480 at 1350.471 kb on - strand, within DZA65_RS06480 at 1350.738 kb on + strand at 1350.739 kb on - strand at 1350.954 kb on - strand at 1350.976 kb on + strand at 1350.977 kb on - strand at 1350.977 kb on - strand at 1350.978 kb on + strand at 1350.978 kb on + strand at 1350.986 kb on + strand at 1350.986 kb on + strand at 1351.043 kb on + strand at 1351.043 kb on + strand at 1351.043 kb on + strand at 1351.043 kb on + strand at 1351.043 kb on + strand at 1351.043 kb on + strand at 1351.043 kb on + strand at 1351.044 kb on - strand at 1351.044 kb on - strand at 1351.044 kb on - strand at 1351.044 kb on - strand at 1351.079 kb on + strand at 1351.079 kb on + strand at 1351.080 kb on - strand at 1351.081 kb on + strand at 1351.081 kb on + strand at 1351.081 kb on + strand at 1351.081 kb on + strand at 1351.081 kb on + strand at 1351.081 kb on + strand at 1351.081 kb on + strand at 1351.081 kb on + strand at 1351.082 kb on - strand at 1351.082 kb on - strand at 1351.082 kb on - strand at 1351.082 kb on - strand at 1351.082 kb on - strand at 1351.082 kb on - strand at 1351.082 kb on - strand at 1351.082 kb on - strand at 1351.082 kb on - strand at 1351.082 kb on - strand at 1351.082 kb on - strand at 1351.122 kb on + strand at 1351.122 kb on + strand at 1351.122 kb on + strand at 1351.122 kb on + strand at 1351.123 kb on - strand at 1351.155 kb on + strand at 1351.155 kb on + strand at 1351.155 kb on + strand at 1351.155 kb on + strand at 1351.155 kb on + strand at 1351.155 kb on + strand at 1351.155 kb on + strand at 1351.155 kb on + strand at 1351.156 kb on - strand at 1351.156 kb on - strand at 1351.156 kb on - strand at 1351.156 kb on - strand at 1351.157 kb on + strand at 1351.157 kb on + strand at 1351.157 kb on + strand at 1351.158 kb on - strand at 1351.202 kb on - strand at 1351.220 kb on - strand at 1351.220 kb on - strand at 1351.232 kb on + strand at 1351.232 kb on + strand at 1351.233 kb on - strand at 1351.233 kb on - strand at 1351.233 kb on - strand at 1351.261 kb on + strand at 1351.261 kb on + strand at 1351.262 kb on - strand at 1351.269 kb on + strand at 1351.270 kb on - strand at 1351.278 kb on + strand at 1351.279 kb on - strand at 1351.279 kb on - strand at 1351.279 kb on - strand at 1351.310 kb on - strand, within DZA65_RS06485 at 1351.466 kb on - strand, within DZA65_RS06485 at 1351.655 kb on + strand, within DZA65_RS06485 at 1351.655 kb on + strand, within DZA65_RS06485 at 1351.655 kb on + strand, within DZA65_RS06485 at 1351.655 kb on + strand, within DZA65_RS06485 at 1351.656 kb on - strand at 1351.656 kb on - strand, within DZA65_RS06485 at 1351.656 kb on - strand, within DZA65_RS06485 at 1351.656 kb on - strand, within DZA65_RS06485 at 1351.656 kb on - strand, within DZA65_RS06485 at 1351.656 kb on - strand, within DZA65_RS06485 at 1351.703 kb on - strand, within DZA65_RS06485 at 1351.825 kb on + strand, within DZA65_RS06485 at 1351.838 kb on + strand at 1351.838 kb on + strand at 1351.838 kb on + strand at 1351.838 kb on + strand at 1351.838 kb on + strand at 1351.838 kb on + strand at 1351.838 kb on + strand at 1351.838 kb on + strand at 1351.839 kb on - strand at 1351.839 kb on - strand at 1351.839 kb on - strand at 1351.839 kb on - strand at 1351.839 kb on - strand at 1351.839 kb on - strand at 1351.839 kb on - strand at 1351.839 kb on - strand at 1351.839 kb on - strand at 1351.839 kb on - strand at 1351.839 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,347,882 + DZA65_RS06470 0.65 -1.7 1,347,882 + DZA65_RS06470 0.65 -0.6 1,347,882 + DZA65_RS06470 0.65 +0.5 1,347,882 + DZA65_RS06470 0.65 +0.1 1,347,882 + DZA65_RS06470 0.65 +0.8 1,347,883 - DZA65_RS06470 0.65 +0.6 1,347,883 - DZA65_RS06470 0.65 +0.0 1,347,883 - DZA65_RS06470 0.65 -0.9 1,347,883 - DZA65_RS06470 0.65 +0.1 1,347,883 - DZA65_RS06470 0.65 -1.4 1,347,883 - DZA65_RS06470 0.65 +1.0 1,347,883 - DZA65_RS06470 0.65 +0.3 1,348,089 + -0.3 1,348,090 - -0.0 1,348,090 - +0.8 1,348,129 - -0.7 1,348,144 + -0.8 1,348,199 + -1.6 1,348,199 + -0.6 1,348,200 - -0.3 1,348,200 - +0.3 1,348,202 + -1.3 1,348,202 + +0.2 1,348,202 + -1.0 1,348,203 - +0.7 1,348,203 - -0.9 1,348,219 + +0.4 1,348,220 - +0.8 1,348,233 + -0.4 1,348,234 - +0.5 1,348,236 + +1.0 1,348,236 + +1.6 1,348,236 + -1.3 1,348,236 + -1.6 1,348,236 + +0.3 1,348,236 + +0.2 1,348,236 + +1.3 1,348,236 + +1.4 1,348,236 + +0.9 1,348,236 + -1.0 1,348,237 - -1.2 1,348,237 - -0.2 1,348,237 - +1.2 1,348,237 - -1.1 1,348,240 + +0.1 1,348,240 + -1.5 1,348,240 + +0.2 1,348,240 + -0.9 1,348,240 + -1.0 1,348,240 + +0.4 1,348,240 + -0.5 1,348,240 + +1.3 1,348,240 + +1.7 1,348,241 - -1.9 1,348,241 - +0.1 1,348,241 - +0.4 1,348,241 - -0.6 1,348,241 - -1.2 1,348,241 - -1.5 1,348,241 - -0.5 1,348,241 - -0.3 1,348,241 - +0.6 1,348,241 - +0.7 1,348,279 - +0.8 1,348,279 - +0.2 1,348,324 + -1.4 1,348,324 + -0.1 1,348,325 - +2.1 1,348,333 + -0.1 1,348,334 - -0.0 1,348,334 - -0.3 1,348,356 + +0.4 1,348,356 + -0.3 1,348,357 - +0.6 1,348,357 - -0.6 1,348,357 - -0.6 1,348,396 + +1.8 1,348,397 - -0.3 1,348,428 + +0.3 1,348,429 - -2.9 1,348,433 + -1.9 1,348,480 - DZA65_RS06475 0.17 -0.4 1,348,489 - DZA65_RS06475 0.19 -0.5 1,348,531 + DZA65_RS06475 0.28 +1.3 1,348,532 - DZA65_RS06475 0.29 -0.4 1,348,532 - DZA65_RS06475 0.29 +0.5 1,348,532 - DZA65_RS06475 0.29 +0.4 1,348,532 - DZA65_RS06475 0.29 -0.6 1,348,553 - DZA65_RS06475 0.33 -1.2 1,348,692 - DZA65_RS06475 0.64 -1.5 1,348,901 + -0.7 1,348,929 + +0.2 1,348,929 + -0.8 1,348,929 + -1.0 1,348,935 + -0.1 1,348,935 + -1.7 1,348,935 + -1.0 1,349,061 + +0.9 1,349,062 - -0.4 1,349,062 - -1.3 1,349,283 + DZA65_RS06480 0.20 +0.3 1,349,283 + DZA65_RS06480 0.20 +0.1 1,349,283 + DZA65_RS06480 0.20 +1.4 1,349,283 + DZA65_RS06480 0.20 +0.1 1,349,283 + DZA65_RS06480 0.20 -2.1 1,349,284 - DZA65_RS06480 0.20 -0.5 1,349,284 - DZA65_RS06480 0.20 +0.3 1,349,284 - DZA65_RS06480 0.20 +0.3 1,349,284 - DZA65_RS06480 0.20 -0.0 1,349,284 - DZA65_RS06480 0.20 +0.2 1,349,347 - DZA65_RS06480 0.23 -0.5 1,349,349 + DZA65_RS06480 0.23 +0.4 1,349,350 - DZA65_RS06480 0.24 +0.6 1,349,350 - DZA65_RS06480 0.24 -0.7 1,349,350 - DZA65_RS06480 0.24 +2.0 1,349,350 - DZA65_RS06480 0.24 -0.1 1,349,416 + DZA65_RS06480 0.27 +0.0 1,349,417 - DZA65_RS06480 0.27 -0.0 1,349,417 - DZA65_RS06480 0.27 -0.8 1,349,709 + DZA65_RS06480 0.41 -1.5 1,349,710 - DZA65_RS06480 0.41 -2.9 1,349,749 - DZA65_RS06480 0.43 -0.1 1,349,819 - DZA65_RS06480 0.47 +0.7 1,349,819 - DZA65_RS06480 0.47 +1.0 1,349,819 - DZA65_RS06480 0.47 -2.6 1,349,819 - DZA65_RS06480 0.47 +1.1 1,349,869 + DZA65_RS06480 0.49 +0.2 1,349,869 + DZA65_RS06480 0.49 +0.6 1,349,999 + DZA65_RS06480 0.56 -0.2 1,350,000 - DZA65_RS06480 0.56 +0.0 1,350,000 - DZA65_RS06480 0.56 -1.3 1,350,077 - DZA65_RS06480 0.59 -1.5 1,350,115 + DZA65_RS06480 0.61 -2.0 1,350,116 - DZA65_RS06480 0.61 -0.4 1,350,448 + DZA65_RS06480 0.78 +0.9 1,350,470 + DZA65_RS06480 0.79 -0.5 1,350,470 + DZA65_RS06480 0.79 -0.2 1,350,471 - DZA65_RS06480 0.79 +0.7 1,350,471 - DZA65_RS06480 0.79 -1.0 1,350,471 - DZA65_RS06480 0.79 +1.3 1,350,738 + +0.0 1,350,739 - +1.3 1,350,954 - +1.3 1,350,976 + +0.2 1,350,977 - -0.6 1,350,977 - +0.6 1,350,978 + -0.2 1,350,978 + -0.8 1,350,986 + +1.5 1,350,986 + -0.7 1,351,043 + -0.2 1,351,043 + -0.0 1,351,043 + +0.6 1,351,043 + +1.0 1,351,043 + -1.0 1,351,043 + -0.7 1,351,043 + +0.1 1,351,044 - -1.0 1,351,044 - +0.9 1,351,044 - +0.3 1,351,044 - -1.2 1,351,079 + +1.3 1,351,079 + +0.0 1,351,080 - -0.1 1,351,081 + +0.4 1,351,081 + -0.9 1,351,081 + +0.5 1,351,081 + -0.0 1,351,081 + +0.3 1,351,081 + -0.3 1,351,081 + -0.3 1,351,081 + -1.6 1,351,082 - +0.3 1,351,082 - -0.0 1,351,082 - -1.0 1,351,082 - -0.6 1,351,082 - -1.0 1,351,082 - -0.3 1,351,082 - -0.7 1,351,082 - -0.7 1,351,082 - -0.3 1,351,082 - -1.0 1,351,082 - -0.0 1,351,122 + -0.4 1,351,122 + +0.5 1,351,122 + -0.2 1,351,122 + +0.1 1,351,123 - +0.3 1,351,155 + -0.7 1,351,155 + -0.1 1,351,155 + +0.7 1,351,155 + +0.4 1,351,155 + -0.3 1,351,155 + +0.6 1,351,155 + -0.6 1,351,155 + -0.3 1,351,156 - +0.9 1,351,156 - -1.5 1,351,156 - +0.1 1,351,156 - +0.7 1,351,157 + -1.3 1,351,157 + +0.6 1,351,157 + -1.9 1,351,158 - +1.3 1,351,202 - -0.1 1,351,220 - -1.0 1,351,220 - -0.9 1,351,232 + -0.4 1,351,232 + -0.5 1,351,233 - -1.1 1,351,233 - +0.9 1,351,233 - +0.4 1,351,261 + -1.0 1,351,261 + -1.5 1,351,262 - +0.3 1,351,269 + -0.3 1,351,270 - -1.2 1,351,278 + -0.3 1,351,279 - -0.9 1,351,279 - -0.7 1,351,279 - -0.0 1,351,310 - DZA65_RS06485 0.13 -0.6 1,351,466 - DZA65_RS06485 0.36 +0.8 1,351,655 + DZA65_RS06485 0.63 -0.1 1,351,655 + DZA65_RS06485 0.63 -0.6 1,351,655 + DZA65_RS06485 0.63 -0.2 1,351,655 + DZA65_RS06485 0.63 -0.7 1,351,656 - -0.0 1,351,656 - DZA65_RS06485 0.63 +0.3 1,351,656 - DZA65_RS06485 0.63 +0.4 1,351,656 - DZA65_RS06485 0.63 +0.8 1,351,656 - DZA65_RS06485 0.63 -0.9 1,351,656 - DZA65_RS06485 0.63 -0.9 1,351,703 - DZA65_RS06485 0.70 +0.8 1,351,825 + DZA65_RS06485 0.88 +1.5 1,351,838 + -1.7 1,351,838 + +0.8 1,351,838 + -0.3 1,351,838 + +0.5 1,351,838 + -1.7 1,351,838 + -0.4 1,351,838 + -1.6 1,351,838 + +0.0 1,351,839 - -0.0 1,351,839 - -0.9 1,351,839 - -0.1 1,351,839 - -0.7 1,351,839 - -0.3 1,351,839 - +0.1 1,351,839 - -0.2 1,351,839 - -0.0 1,351,839 - -0.7 1,351,839 - -0.5 1,351,839 - +1.5
Or see this region's nucleotide sequence